Coregonus clupeaformis (lake whitefish): 121562156
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Entry
121562156 CDS
T08357
Name
(RefSeq) Down syndrome cell adhesion molecule-like protein 1 homolog isoform X1
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121562156
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
Other
121562156
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Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
fn3
ig
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
Pur_ac_phosph_N
Ig_5
V-set_CD47
C1-set
Ig_6
DUF1461
Motif
Other DBs
NCBI-GeneID:
121562156
NCBI-ProteinID:
XP_041730447
LinkDB
All DBs
Position
5:complement(12053953..12197466)
Genome browser
AA seq
2101 aa
AA seq
DB search
MWLVTLFLLYSLQEVNSEDVVSTRLYFVNASLQRVTFSSSVGVSLPCPAGGTPHAVLRWY
LVTGDDIYDVPHIRHVHANGTLQLYPFSPSAFNSYIHDNDYFCTAENQAGKIRSPSIRVK
AVFREPYTVRVADQRSMRGNVAVFKCLIPSAVQEYVSVVSWEKDTVSIVPGNRFFLTSFG
ALYISEVQKEDALSTYRCITKHKYSGETRQSNGARLSVMDPTESTPSVLDSFQSGEVQVG
RNVELPCIASGYPNPTIRWLKDGRPLPADSRWTRHLTGLTVSDLRLDDSGNYICEVTNSF
GSKEVTGHLNVIEPLRVTLSPKNLKTGISSTVILSCAVQGSPHFTMSWYRNTEPVLPDQH
FSIQGAHNETLLISSAQKRHSGAYQCFATRNGQTAQDFSIILLEDGTPRIVSSFSERVVV
PGEPFSLMCAAKGAPPPTITWTLDDEAVARDPSRVRASQYTLSDGSTVSHVNISSPEIRD
GGVYRCAARNSAGSAEYQARINVRGSPRIRDMRNITAVAGRNTFINCRVIGYPYYSIKWY
KEGLLLPDNHRQVVYENGTLKLSDVQKVLDEGAYLCSVLIQPQIFISQTVYVQVKVPPLI
QPFDFPPTSIGKLMYIACVVSSGDMPIHITWRKDGQEIVPSSGVNIETKEYMSSLQIGKV
SLKHNGNYTCIASNDAATVSSERQLTVTVPPQFVVQPNNQDGIYGKAGVLNCSVDGYPPP
KVMWKHAKGIGNPQQYHPVPLTGRIQIMGNGSLLIRHVLEEDRGYYLCQASNGVGSDISK
SMVLTVKIPAMITSHPNTTMAIKGQIKELNCTARGEWPIIIRWERGDTVIDPDRNPRYAI
TTSPNEKSDEVLSTLKLKPAERGDSVFFSCHAINSYGEGRGLIQLTVQEPPDPPELEVRE
VKDRSMNLRWTQRFDGNSIITSYDIEYKNKTDPWELKHATRKISPTNNQANIVDLHPAQV
YSIRMFSYNKIGHSQASKELTISTEEAQPDGPPMEVILQPMTSQSIRVTWKAPRKELQNG
VIRGYQIGYRENGPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPS
SSEINATTLEDVPSQPPQNVRAISVTSDEAVITWAEPPRLTLHGVLKGYRVVFWSLFPDG
GGCCGGPMYPLPHARAQGPTQKWGEMQNITTTREQVELRGLEKFTNYSVQVLAYTQAGDG
VRSNVLYIQTREDHPGPPAGIKAVPSSTSSVVVSWLPPHKPNGIIRKYTIYCSSPGSGQP
APSEYEANPELLFYRITHLNRGQQYLIWAAAVTTAGRGNISDKVTVEPAGKAPAKILSFG
GTVTTPWMKEVRLPCSSVGEPTPTMKWTKDSEDTAIPVTLDGQRLIMANGTLVLRSVKAE
DSGYYTCTATNMLGFDTIIVNLLVQVPPDQPRLTVSTTSTSSITLAWIPGDNGGSSIRGF
VLQYSVDNIEGWRDVFISSSERSFKLDNLRCGTWYKVKLAAKNSVGAGRISEIIEAKTHG
REPQFNKDQPVFTHINSTHARLNLQGWASGGCPITAVLLEFRPKGNWAWQNVRTNATADV
FLAELREATWYELKMKACNSAGCGNQSSQFATLDYDGTGTIPPIKSARPEGDDVKKLFSI
GCPVILVTLVVTLLFIIRKKRKEKRLKRLRDAKSLAEMLISSKNNRSFDTPVKGPPQGPR
LHIDIPRVQLLIEDKEGIKQIGEDKATIPVTDTEFSQNVNPQSFCTGVSVHHPALIQNTG
PLIDMSDIRPGTNPVSRKSVKSAHSTRNRYSSQWTLTKCQSSTPARTLTSDWRTVGSQHG
ITVTESDSYSASLSQDTDKGRNSMVSTESASSTYEELARAYEHAKLEEHLQHAKFEITEC
FISDSSSDQMTTGTNDNADSMTSMSTPSETGLCRFTASPPKPQDYDRGRPTNVAVPIPHR
ANKSEWTAKSDYCNLPLYMKTDPFFRKQSELHDPCPVVPPREASNRSLAQRAYHTQGRHM
TLDSSKQQQQALTVGHAGLAGLSASGGASGGASGSGSAVGGATGGPSVGSSTSSLPQRTL
TMPGSSSSSAQSAAAAAAATAAASGGDSRDSLLESSSSGLGRLDRQKQAAGGAYSKSYTL
V
NT seq
6306 nt
NT seq
+upstream
nt +downstream
nt
atgtggctggtaactttattcctgctgtattctttacaagaagtgaacagtgaggatgtg
gtctcgacgcggctgtactttgtaaatgcctccctgcagcgggtgaccttctccagctcg
gttggggtgtccctgccctgccctgcgggcggcacaccccatgccgtcctgcgctggtac
ctggtcaccggcgacgacatctacgacgttccccacatccgccacgtgcacgccaacggc
accctccagctctaccctttctcaccctctgccttcaacagctacatccatgacaacgac
tacttctgcaccgcagagaaccaggccggcaagatccgcagccccagcattcgcgtcaaa
gcagtgttcagggagccctatacggtgcgggtggcagaccagcggtccatgcggggcaac
gtggctgtgttcaagtgcctcatcccctcggccgtgcaggagtacgtcagcgtggtgtcc
tgggagaaagacaccgtctccatcgtgccagggaaccgtttcttcctgacgtcgttcggg
gccctgtacatatcagaggtccagaaggaagatgccctgtctacctaccgctgcatcacc
aagcacaaatacagtggagagactcgccagagcaatggagccaggctctctgttatggac
cctacggagtccaccccctcagtgttggacagtttccagtccggggaggtccaggtggga
cgtaatgtggagctgccctgcatcgcctcgggttatcccaaccccaccatccgctggctg
aaggacggacgcccgttgcccgccgactcccgctggacgcgccacctcacgggcctgacg
gtcagcgatctgcgtctggacgacagcgggaactacatctgtgaggtcaccaacagcttc
ggctctaaagaggtgaccggtcatctcaacgtcatcgagcctttgagagtgactctatct
cctaagaacctgaagacgggcatcagcagcacggtgatcctgtcttgtgccgtgcagggt
tctccccacttcaccatgtcctggtaccgcaacacagaacccgtcctccccgaccagcac
ttctcaatccagggtgcccacaatgagaccctgttaatctcctctgcccagaagagacat
tcgggagcctaccagtgcttcgccacccgcaacggccagaccgcacaggacttctccatc
atactgctggaggatggtacgccccgtatcgtttcctccttcagtgagcgtgtggtggtc
ccgggggaacccttctccctcatgtgtgctgccaaaggcgctcctccccccaccatcaca
tggactctggatgatgaggctgtggccagggacccgtcccgggtgagggccagccagtac
acactgtcggacggctccaccgtgtcccacgtcaacatcagcagcccggagatccgcgac
ggaggggtgtatcgctgcgccgcacgcaactcggccggtagcgccgagtaccaagcgcgc
ataaacgtaagaggttctcccaggatcagggatatgcgtaacatcacggcggtggctggg
aggaacacctttataaactgtcgtgtgattggctatccctactactcaatcaagtggtac
aaggaggggcttctgctgcctgacaaccatcgtcaggtggtgtatgagaatggtactctg
aagctaagtgacgtccagaaggtcttggacgagggggcgtacctatgcagtgtgctcatc
caaccacagatcttcatcagccagaccgtctacgtccaagtcaaagtgccccctctgatc
caaccctttgacttcccccccacctccattgggaagctcatgtacatcgcctgcgtggtg
tcatctggcgacatgcccatccacataacctggcgtaaggacggccaggagatcgtgccc
tcgtccggcgtcaacatcgagaccaaggagtacatgagctcgctgcagatcggcaaggtg
tcgctcaagcacaacggcaactatacctgcatcgctagcaacgacgctgccaccgtcagc
tctgagagacagctcactgtcacagtgcctcctcagtttgtggtccagcccaacaaccag
gatgggatatacggcaaggcgggggtcctcaactgctccgtggatggatatccccctccc
aaagtcatgtggaagcatgccaaaggtatagggaacccccagcagtaccacccagtgcct
ctgaccggtcggatccagatcatggggaacggctccctgctgattcgtcacgtcctggag
gaggaccggggctactacctctgtcaggcctccaacggagtgggctccgacatcagcaag
agcatggtcctgaccgtcaagatcccagcaatgatcacgtcgcaccccaacaccaccatg
gccattaagggccagattaaggagctgaactgcacagcgaggggggaatggcctatcatc
atccgttgggagcgtggtgacacggtcatcgaccccgaccgtaaccctcgctacgccatc
accaccagccccaacgagaagagtgacgaagtattgtctacgctgaagctgaagccagca
gagcgtggtgactcggtcttcttttcctgccatgccatcaactcatatggagagggccgg
ggactcatccagctcactgtgcaagagcccccagaccctccagagttggaggtgagggag
gtgaaggatcggagtatgaacctgcgctggacccagagatttgacggcaacagcattata
accagctacgacattgagtacaagaacaagactgatccgtgggagttgaagcatgccacc
cgtaagatctctcccacaaataaccaggccaacatcgtggatctacaccctgcccaagtc
tacagcatccgcatgttctcctacaacaagatcggacacagtcaagccagcaaggagctc
accatcagcacagaggaagcacagcctgatggtcctcctatggaggttatcctccagcct
atgacctcacagagcatccgcgtcacctggaaggcccccaggaaggagcttcagaacggg
gtgatccggggctaccagattggttaccgtgagaacgggccgggcagtaacggccagtat
agcattgtggagatgaaggctacgggggacagtgaggtgtacaccctggacaacctgaag
aagtttgcccaatatggagtggtggtccaggccttcaacagggctggcacaggcccctcc
agctctgagatcaacgctaccacactggaggatgtgcccagccagccgccccagaatgtg
cgggccatctcggttacatcagacgaggcggtaatcacgtgggcagagcccccgcgtttg
acactgcacggcgtgctgaagggctaccgcgtggtcttctggtccctcttccccgatgga
ggtgggtgctgtgggggaccgatgtacccgctcccgcacgcacgggcacagggccccacg
cagaaatggggagagatgcagaacatcactacaactcgtgaacaggtggagctgagaggg
ctggagaagttcacaaactacagtgtccaggtgctggcatacacacaggctggggatggg
gtcaggagcaatgtcctgtacatccagacccgcgaggaccaccctggccccccggctggc
atcaaagctgtgccctcatccaccagtagtgtggtggtttcctggctacccccacacaag
cccaatggaatcatccgcaagtacaccatctactgctccagccccggatcaggccaaccg
gcccccagtgagtatgaggccaaccccgagctgctgttctaccggattacccacctgaac
cgcggacagcagtacctcatctgggccgccgccgtcaccaccgccggacgtggcaacatc
agcgacaaggtcactgtggagcctgctgggaaggccccagctaagatcctatcgttcgga
ggtacagtgaccactccttggatgaaggaggtgaggctaccctgcagctcagtgggtgaa
cccacccccaccatgaaatggaccaaagacagtgaggacacagccatcccggtgactctg
gacggtcagaggctcatcatggccaatggcacactggtcctgcgctcggtgaaagctgag
gattctgggtactacacgtgcacggccaccaacatgctgggcttcgacaccatcattgtc
aacctgctggtgcaagttcccccagaccagccccgtctgactgtctccaccacctccacc
tcctctatcaccctggcctggatccctggggacaacggaggatcctccatcagaggtttc
gtgctgcagtactcggtggacaacatagaggggtggagggatgtgttcatcagttccagt
gagaggtccttcaagctggacaacctacgctgtggcacctggtacaaggtcaaactggcc
gccaagaacagcgtgggagcgggacgcatcagtgaaatcattgaggctaagacccacgga
cgagagccccagttcaataaagaccagccggtgttcacccacatcaactctacccacgcc
aggctcaacctgcagggctgggcgagcggtggctgccccatcacggccgtgctgctggag
ttcagacctaaggggaactgggcgtggcagaacgtgcgcaccaacgccaccgctgacgtg
ttcctggctgagctccgcgaggccacctggtacgagctgaagatgaaggcctgtaacagc
gccggctgtgggaaccagagctctcagttcgccacgctggactacgatggcacaggtacc
atccctcccattaagtcagcgcggccggagggcgatgacgtcaagaagctcttctccatt
ggctgccccgtcatcctggtcactctggtcgtcaccctgctcttcatcatccgcaagaaa
cgcaaagagaagagactgaagagacttagagatgccaaaagcctggctgagatgctgatc
agcagtaagaataaccggagctttgacacccctgtgaaggggcccccccagggtccccga
ctccacatcgacatccccagagtccagctgctcatcgaggacaaggagggcatcaaacag
atcggtgaagacaaagccaccatcccagtgacggacacagagttcagccagaatgtgaat
ccacagagcttctgtacgggcgtgtctgtgcatcaccccgccctcatccagaacaccggc
cctctgattgacatgtccgacatcagaccagggaccaacccggtgtcgaggaagagcgtg
aaatcggcccacagtacgaggaaccgctactccagccagtggaccttgaccaagtgccag
tcgtccacgcccgcccgtaccctcacctccgactggcgcaccgtgggctcccagcatggc
atcaccgtcaccgagagcgacagctacagcgccagcctctcacaggacacggataagggg
cgtaacagcatggtgtctacagagagtgcgtcgtccacctatgaggagctggcgcgggcc
tacgaacacgccaagcttgaggagcacctgcagcacgccaagtttgagatcaccgagtgc
ttcatctccgacagttcctcagaccagatgaccacgggcaccaacgacaacgccgacagc
atgacctccatgagcacgccgtccgagacgggcctgtgtcgcttcaccgcctcgccaccc
aaaccccaggactacgatcgtggcagacctaccaatgtagccgtgcccatcccccaccgc
gccaacaagagcgagtggactgccaaaagtgactactgtaaccttcccctctacatgaag
acagaccctttcttccggaagcagtcggagctgcatgacccgtgcccggtggtgccgccc
cgcgaggcctccaaccgcagcctggcccagcgggcataccacacccagggccgccacatg
actctggactcctccaagcagcagcagcaggctctgactgtgggccatgctggactggcc
ggcctcagcgcctcagggggagcatcggggggtgctagtggtagtggtagtgctgtagga
ggggcgactggagggccgtctgttggttccagcacctcctccctgcctcagaggactctc
accatgcccggctcctcctcttcctctgcccagagcgctgcagccgccgccgctgctacc
gccgcagcctcggggggagactccagagactctctgctggagagcagctcgtcaggcctg
ggcagactagacagacagaagcaggcggctggcggtgcttactccaaatcatatacactg
gtgtag
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