Coregonus clupeaformis (lake whitefish): 121562174
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Entry
121562174 CDS
T08357
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H-like
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121562174
04020 Calcium signaling pathway
121562174
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121562174
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121562174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
UPF0542
DUF3043
Motif
Other DBs
NCBI-GeneID:
121562174
NCBI-ProteinID:
XP_045075163
LinkDB
All DBs
Position
Unknown
AA seq
1374 aa
AA seq
DB search
MNLSIGIEYHQQPVELTDILEISNIVFTCMFLLEMMFKLLAFGLFGYIKNPYNIFDSVIV
IISVWEIVGQADGGLSVLRTFRLLRVLKLVRFLPALRRQLVVLMKTMDNVATFCTLLMLF
IFTFSILGMHLFGCKFNLQMENGDTIPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMA
STSPLAALYFVALMTFGNYVLFNLLVAILVEGFQAERSRCEPRRSGPSHNHAHGGHTHAD
AQELLGPESILGEGLMYGEVGLGYSEAGIDCVDSRRGSAASIEPSAYDQRSLSSPGQRSP
LPPRGQCSVSGWGSRRSSWNSLNRSDTSGERKSLLSGEGGGEEEEEEEEEEEGSLELLQV
SSLGPSVTGEYGDCNGRSLHPVTYDPNKDNLSPDDDMEEDNLWFRVRRTLQSHKPRWCRE
HKDWNLYLFSPQNSFRVWGKGLISHKMFDHVVLVFIFLNCITIALERPGIQPHSTERVFL
SVSNYVFTLIFLAEMTVKIVALGFCWGKQSYLKSSWNVLDGILVFVSLVDILVSLALTGG
NRILGILRVLRLLRTLRPLRVISRAPGLKLVVETLITSLRPIGNIVLICCAFFIVFGILG
VQLFKGKFYHCEGLDTRNITTKSDCLLANYRWIRRKYNFDNLGQALMSLFVLSCKDGWVN
IMYDGLDAVGVDQQPVRNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQDQEEE
EQRLREEKRLKILEKKRRSKEKDGAEAQQRPYYSDYSPVRLTVHTLCTSHYLDLFITVII
AINVLTMSMEHYNQPQYLEEALKYCNYVFTCVFIIETLLKLVAFGLNRFFKDRWNQLDLA
IVLLSIMGITLEELKMNASLPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVMQALP
QVGNLGLLFMLLFFIYAALGVELFGKLECNDSNPCEGLSRHATFENFGMAFLTLFRVSTG
DNWNGIMKDTLRECLPEERSCLTYLPLVSPVYFVTFVLMAQFVLVNVVVAVLMKHLEESN
KEAKEDAEMDAEIALEMERARRLSSTSNASSLGGAYVGTRLHSPGQEEERQCSQEEELLS
PRKMSVSRMHSLPNDSYMFPPVRPASATYPLQEDHTSLLHQASGSVTSVYSQTWEEQAPL
SSLSPPPPPAPLVLTPPHIAPPRPSPRGLRRQVAVKVDSVEVHSVDSVERQDPPLNPPPL
PLHGSGRCHSLSPYASPVSPASLRSRGSALSLLGAGLKGHDPRKGFSVDTQGFLDEPRRP
DDQRRHSTEICPSPPEDPPLGEGAEVRSHGKKRMSPPCISIHPPRGSPGRAPSEEPPADC
NTLLRRRTPSYDLADTHTPTPPASQSGTNISDTLPSHVSQSGTSAWLTSDPYMK
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcagtatagggatagaataccatcaacagccggtggagttgactgacatcctg
gagatcagtaacatcgtgttcacctgcatgttccttctggagatgatgttcaagctgctg
gccttcggcctgttcggctacatcaagaacccctacaacatcttcgacagtgtcatcgtc
atcatcagtgtttgggagatcgttgggcaggcggacggcggtctgtcggtcctgcgtacc
ttccgtctgctgcgggtcctaaagctggtcaggttcctgcccgccctgcgcagacagctg
gtggttctgatgaagaccatggacaacgtagccaccttctgtacgctactgatgctgttc
atattcaccttcagtatccttggtatgcacctgtttggctgtaaattcaatctgcagatg
gagaatggagacaccatcccagaccgcaagaacttcgactctctgctctgggccatcgtt
actgtgtttcagatcctgactcaggaggactggaatgtggtcctgtataacggcatggcc
tccacctctcctctcgctgctctctactttgtagctctgatgacgtttgggaactacgtc
ctcttcaacctgctggtggccatcttggtggagggcttccaggctgagcggtcacgttgc
gaaccgcgacgttctggcccctcccataatcatgcgcacggcggccacacccatgccgac
gcccaagagctcttgggccctgagtccattctgggggaggggcttatgtatggagaggtg
ggtttagggtattcagaggcagggattgactgtgtggattctcgtcgcggcagtgctgct
tccatagaaccctcagcctacgaccagcgctctctgtccagccccggccagcgctcgccc
ctgcctcccagaggtcagtgttcagtcagtgggtggggcagcaggaggtcaagttggaat
agcctcaaccgcagcgacaccagcggagagaggaagagtctgctgtcaggagagggagga
ggggaggaggaggaggaggaagaggaagaggaagaggggtccttagagctgttacaggtg
tcctctctgggcccgtcggtaacaggggagtacggggactgtaacgggaggagtcttcat
cccgtgacctatgaccccaacaaggacaacctttcacctgacgatgacatggaggaggac
aacctgtggttccgggtcaggagaacgctgcagagccacaagccacgctggtgcagagaa
cacaaagactggaacctctacctgttctcccctcagaactcgttccgtgtctggggtaaa
ggtctgatctctcataagatgtttgatcacgtggtcctggtcttcatcttcctcaactgc
atcactatagctctggagagacccggcatccagcctcacagcaccgagcgagtgtttctg
agtgtctccaactacgtgttcactctaatcttcctggctgagatgactgtcaagattgta
gcgttggggttttgctggggtaaacagagctacttgaagagcagttggaatgtgctggat
gggatcctggtgtttgtctctctggtggacatcctggtttctctggccttgaccggaggg
aaccgcatcctgggaatcctcagagtattacggctgctacgcacactacgacctctcagg
gtgatcagtcgagccccagggctgaagcttgtagtagagactctgatcacgtctctgaga
cccatcggaaacatcgtcctcatctgctgcgccttcttcatcgtgtttggaatactggga
gtacagctgttcaaggggaagttctaccactgtgaaggcctggacaccagaaacatcacc
accaagtcagactgtctgctggcaaactaccgttggatacggagaaaatataacttcgac
aacctgggacaggcactgatgtctctgttcgtgctgtcctgtaaggatggatgggtcaac
atcatgtatgacggcctggacgcagtgggagtagaccagcagcccgtcaggaaccacaac
ccctggatgctcctctacttcatctccttcctcctcatcgtcagtttcttcgtcctcaac
atgttcgtgggcgtggtcgtggagaacttccacaagtgtcgacaggaccaggaagaggag
gagcagcggctacgggaagagaagaggctcaaaatcctggagaaaaagcgcaggagtaag
gagaaggatggggccgaagcccaacagaggccctactattcagactactccccggtgcgt
ctcaccgtccacacgttgtgcaccagccactacctagacctcttcatcaccgtcatcatc
gccatcaacgtcctcaccatgagcatggagcactacaaccagccgcagtatctggaggag
gctctgaagtactgtaactacgtgtttacctgtgtcttcatcatcgagaccctgctgaaa
ctagtggccttcggactgaacaggttctttaaggacaggtggaaccagttggacctggcc
atagtgttgttgtccatcatgggcatcactctggaggagctgaagatgaacgcatcgctg
cccatcaaccccaccatcatcaggatcatgagagtactgaggatcgctagagtgttgaag
ctgttgaagatggctacagggatgagagctctgctggacactgtcatgcaggccctgccc
caggtggggaatctgggtctcctcttcatgttgctgttcttcatctacgcagccctggga
gtggagctgtttgggaaactggagtgtaacgacagtaatccgtgtgagggtctgagtcgc
cacgctacgtttgagaactttgggatggctttcctcacgttgttcagagtctctactgga
gacaactggaacggaatcatgaaggacacgttgcgcgagtgtcttccagaggagcgctcc
tgtctgacctaccttcccctggtgtccccagtctacttcgtgaccttcgtcctcatggcc
cagttcgtgctggtcaacgtggtggtagcggtgttgatgaagcacctagaggagagcaac
aaggaggccaaggaggacgccgagatggacgccgagatagcgctggagatggagagagct
agacgtcttagctccacctctaacgcgtcatcactgggcggggcctatgtggggacacgc
ctacactcacctggtcaggaggaggaacgccagtgcagccaggaggaggagcttctgtca
ccaaggaagatgtccgtatccaggatgcattccctccctaacgacagctacatgtttcct
cctgtacgacctgctagcgccacctaccctctacaggaggatcacaccagcctcctgcac
caagcctcaggctctgtgacgtctgtttactcccagacgtgggaagaacaggctccgctg
tccagcctctctccccctcctccccctgctccacttgtcctcaccccccctcacatcgcc
ccgccaaggccctcgcccagggggctgcgcagacaggtagctgtgaaggtggactcagtg
gaggttcatagtgttgactcagtagagagacaggacccccctctcaaccctccccctctc
cccctacatggaagtgggcggtgtcactccctctccccctacgcctcccccgtctccccc
gcctccctgaggagccgagggagtgcgctcagcctgctgggggcgggcctaaaaggtcat
gacccgaggaagggcttcagcgtagacacccagggcttcctggatgaaccccgtcgtcct
gacgaccagcgacgacactccacggagatctgcccgtcccctccggaggacccgccgcta
ggggagggggcagaggtcagaagtcacgggaagaagcggatgagcccaccctgcatctcc
atccaccccccacgtggctcaccaggccgtgcgccctcggaggagccgccggcagactgc
aacacgctgctgagacgcaggacgccctcctacgacctcgccgacacacacacgccgacg
cctccagccagccaatcaggaacaaacatttccgacactctgccctctcacgtgagccaa
tcaggaaccagcgcctggctgacctctgacccttacatgaagtga
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