KEGG   Coregonus clupeaformis (lake whitefish): 121563344
Entry
121563344         CDS       T08357                                 
Symbol
rbm8a
Name
(RefSeq) RNA-binding protein 8A isoform X1
  KO
K12876  RNA-binding protein 8A
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013  Nucleocytoplasmic transport
cclu03015  mRNA surveillance pathway
cclu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121563344 (rbm8a)
  09122 Translation
   03013 Nucleocytoplasmic transport
    121563344 (rbm8a)
   03015 mRNA surveillance pathway
    121563344 (rbm8a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121563344 (rbm8a)
   03041 Spliceosome [BR:cclu03041]
    121563344 (rbm8a)
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     121563344 (rbm8a)
Spliceosome [BR:cclu03041]
 Complex C
  Other components
   EJC/TREX
    121563344 (rbm8a)
SSDB
Motif
Pfam: RRM_1 RRM_3 RRM_5
Other DBs
NCBI-GeneID: 121563344
NCBI-ProteinID: XP_041731216
LinkDB
Position
17:24718804..24722354
AA seq 175 aa
MADVLDLHEAGGEDFAMDEDGDDSIHKLKEKAKRRKGRGFGSEEGARSRVREDYDTVEQD
GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEFGEIKNLHLNLDRRTGYLKGYALVE
YETYKEAQAAMEGLNGQDMMGQPISVDWGFVRGPPKSKRRGGGRRRSRSPDRRRR
NT seq 528 nt   +upstreamnt  +downstreamnt
atggcggacgtattagatcttcatgaagcgggaggcgaggactttgctatggatgaggat
ggtgatgacagcatccacaagttaaaagagaaggcaaagaggagaaagggacgaggtttt
ggttcagaggagggagcgaggtccagagtgagagaggactatgatacagtggagcaggat
ggagatgagccaggccctcagagatctgtagagggttggatccttttcgtgactggggta
catgaggaggccactgaggaggacatccacgacaagtttgcggagtttggagagatcaag
aacctacatctgaacctggaccgaagaacaggttaccttaagggttatgcgctggtggag
tatgagacgtacaaagaagcccaggcagccatggaagggctgaatggccaggacatgatg
ggccagcctatcagtgtggactggggcttcgtcagaggacctcccaagagcaagaggagg
ggtggtggacgtagacgtagcaggagtccagacaggcgacgacgttga

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