Coregonus clupeaformis (lake whitefish): 121563435
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Entry
121563435 CDS
T08357
Name
(RefSeq) sodium-dependent serotonin transporter-like
KO
K05037
solute carrier family 6 (neurotransmitter transporter, serotonin) member 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
121563435
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121563435
Transporters [BR:
cclu02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
121563435
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Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
121563435
NCBI-ProteinID:
XP_041731285
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Position
5:15965604..15981109
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AA seq
639 aa
AA seq
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MEMKQSMMIGGEKEKGEESSQENGRLMLADGGLAEKGDPKVNSGGGSGVVSNGYPTSTAQ
SPKEVAGGVPAGALRTLVVQQTSLDRPRETWSKKMDFLLSVIGYAVDLGNVWRFPYICYQ
NGGGAFLLPYMLMAVFGGVPLFYMELALGQFHRSGCISIWKHICPIFKGIGFAICIIALY
IAFYYNTIMAWALYYLLASFRPTLPWTTCSNPWNTVNCLRYLSTDSNVTWTNTSTSPAEE
FYTRQVLQVHMSPGLHQLGSVSWQLALCLLFIFTIVYFSIWKGVKTSGKVVWVTATFPYL
VLLVLLVRGATLPGAWRGVVFYLKPDWGKLLSTTVWIDAAAQIFFSLGPGFGVLLAFASY
NPFHNNCYKDALVTSSVNCLTSFLSGFVIFTVLGYMAEMRKIGVETVAKDAGPSLLFIIY
AEAIANMPAATFFAIIFFLMIIMLGLDSTFAGLEGVITAMLDEFPQLLSRRREWFVLGLV
CVCYLGALSTLTYGGAFVVKLFEEYATGPAVITVVFLEVIAVSWFYGTSRFCADVHMMLG
FSPGLFWRVCWVAICPIFLLFIIISFLAFPPEVKLFDYIYPPWTTVLGYCIGVSSFICVP
AYMVYHLLTTKGTFKQRLLKGITPVPSGPHSDIIITHTV
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggagatgaagcagtcaatgatgataggaggagagaaagagaaaggggaggagtcatct
caggagaacggcagactcatgctggctgacggagggttggcagagaagggggaccccaaa
gtgaactctggtggggggtcaggagtggtgtccaacgggtaccccacgtccacagcgcag
agccccaaggaggtagcggggggtgtacccgcaggggccctcaggactctagtggtccag
cagaccagtctggaccggccccgggagacctggagcaagaagatggactttctgttgtct
gtgattggctacgccgtggatctgggaaacgtgtggcgcttcccctacatctgctaccaa
aatggcggaggggccttcctgctgccctacatgttgatggcggtattcggcggcgtgcct
ctgttctacatggagctggcactggggcagttccaccgcagcggctgcatctccatctgg
aaacacatctgccccattttcaagggtatcggcttcgccatctgcatcatagcgctgtac
atagcgttctactacaacaccatcatggcgtgggccctgtattacctcctggcgtcattc
cggcccaccctgccctggaccacgtgctccaacccctggaacacggtcaactgcctccgc
tacctgtccaccgacagcaacgtcacctggaccaacacctccacctcgcccgccgaggag
ttctatacgcgtcaggtattgcaggtgcacatgtctccaggtctgcaccagcttggcagt
gtgagttggcagctggctctctgtctcctgttcatcttcaccattgtctacttcagcatc
tggaagggagtcaagacctctggcaaggtggtgtgggtgacagccaccttcccctacctt
gtcctgctggtgctgctcgttcgtggggctactctgcccggggcctggaggggtgtggtc
ttctacctcaaacctgattgggggaaactactcagcaccacagtatggattgatgcagca
gctcagatcttcttctctctggggccaggtttcggggtgctcctggcctttgccagctac
aacccctttcacaacaactgctacaaggatgcgttggtgaccagctcggtgaattgcctg
accagtttcctctctgggtttgtcatctttaccgtgctcggctacatggctgagatgcgc
aaaataggcgtggagaccgtagccaaggatgctggtcccagtctgctgttcatcatctat
gctgaagccatcgccaacatgcccgctgccaccttctttgccatcatcttcttcctcatg
atcatcatgctggggttggacagcacgtttgccggtctggagggggtgatcacagccatg
ctggatgagttcccccagttgttgtctaggaggagggagtggtttgtcctgggcctggtg
tgtgtctgctacctgggagccctctccaccctcacctacggaggtgcgtttgtggtgaaa
ctgtttgaggagtacgccacgggacctgctgtcatcactgtggtcttcctagaagtcatc
gccgtttcctggttctatggcacgagtcgtttctgcgctgatgtccatatgatgctgggc
ttctcccctggactgttctggagggtgtgctgggtagccatctgccccatcttcctactg
ttcatcattatcagtttcctagcgttccccccggaggtgaagttgtttgactacatctac
ccaccctggaccactgttctgggctactgcatcggagtgtcctccttcatctgtgtacca
gcctatatggtgtaccacctgctcaccaccaaagggacctttaaacagcgtctcctgaag
ggcatcacccctgtacccagtgggcctcacagtgacattatcatcacccacaccgtctga
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