Coregonus clupeaformis (lake whitefish): 121564406
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Entry
121564406 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121564406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121564406
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121564406
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
HECT type E3
121564406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
Motif
Other DBs
NCBI-GeneID:
121564406
NCBI-ProteinID:
XP_041731690
LinkDB
All DBs
Position
5:20945962..20988066
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AA seq
2065 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQAHTVAGRLQSEQVKHKANSPPESRRPKSKASKAA
PSSASGQSRGHSSRSSSSSLSLSVASFVLQEDPEAAGTSEREPTGHQSKSEGTTRGLKRS
SAPDLNNTPTPAKKSKSHPPPRDHTTEAKKGLAKSSKKRPLAPEPPAPTGRIQSKKSGAS
GASPTQKRKKADSLPGLSSTAGSFPNRTDGRSAKPTKLASKSAASAKAGCSTVTDSSSSA
STSSSSSTSANSATATQGARLKQGKDQNKARRSRSASSPSPRRSTRDKEQAKAAVSSKFE
WAARFSPKVNLPKPKLSLPGSSKTETTSKPGPSGLQAKLASLRKSTKKRSESPPAELPSF
RRSTRQKTTGSCASTSLCSRRGSGLGKRGAAEARRQEKMADSDNNQDGANSSAARTDEAP
QGASGTASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHR
TIGSGASSKAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITL
LQMEHNFDIMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEM
LSRRHSKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVSDSLPLLT
QRLSHQDKKSVESTCLCFARLVDNFQHEENLLQQVASRDLLTNIQQLLVVTPPVLSSGMF
IMVVRMFSLMCSNCPCLAVQLMKQNIAETLRFLLCGAANGSCQEQIDLVPRSPQELYELT
SLICELMPCLPREGIFAVDLMLKKGSAQATEGAIWQWRDDRGLWHPYNRIDSRIIETAHQ
NGEDEISLSTLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLANPTTGGHQEVRREDARA
QLMKEDPELAKCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIFFADAELLKDVLRNH
AVSSHIASMLSSQDLKIVVGSLQMAEILMQKLPDVFSVFFRREGVMHQVKNLAESEAFLT
SPPKACTSGTASLCTTTISTATTTLATNATPDLGSPSFQHSMDDSLDLSPQGRLSDVLKR
KRLPKRGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGKLGAQTNSTNS
EPSRTAGVSGLARALPKDSVSNNRDKIKAWIKEQACKFVVRYFNTENIDGSNPALNVLQR
LCTATEQLSLQMDGGVECLVEICSIVSESDVSSFEIQHSGLVKQLLLYLTSSSDRDLVSR
DVRLKRFLHVFYGCPIPGMEPAGRLEPSENGPLLSLVHKMNNCLSQMEQFPVKVHDFPSG
NGNGSRGSQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGY
GRIREEDEDSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYIGDHLLPYNMTVYQAVRQFS
LQAEEERESTDDEANPLGRAGIWTKTHTIWYKPVREDEDGSKDAVGGKRGRAQTAPTKTS
PRNAKKQDELWHDGVCPSVASPLEMYLMSEPPESITFDDPSLDVNLLLRVLHSISSYWFY
LYDNAVSKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTR
QMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINREELLKQAESVMQ
DLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPKGSQEGT
KYMFSSRGLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWML
RHETSISSHDLVNIDPGVAKSIQHLEDIIRQKKRLEQDRSQTRETLQQALESLNMNGCSV
EDLGLDFTLPGFPNIELKKGGKDIPVTIYNLEEYLRLVVYWTMNEGVSRQFESFREGFES
VFPLHHLQYFYPEELDQLLCGSKSDTWDVKTLMECCRPDHGYTHDSRAVRFLFDVLSSFD
AEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPD
YSSIEIMRKKLLIAAREGQQSFHLS
NT seq
6198 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagcccatacagtcgcaggaaggttgcagtcagagcaggtaaaa
cataaagcaaattcccctcctgaaagtagaagacctaaatctaaggcttccaaagccgca
cccagctcagcctctggccagtccagagggcacagctcaagaagcagcagcagcagtctg
tcactgtctgtggcttcatttgtgctgcaagaagacccagaggccgcagggacatcagag
cgagagccaacaggccaccaatccaagagtgaaggtaccacccgagggttgaagagaagt
tctgcacctgacctcaacaacacccccaccccagccaagaagtccaaatcccacccccca
cccagagaccataccactgaggccaagaaaggccttgccaaatcctccaagaagagaccc
ctggctccagagccacccgcgcccacaggccgcatccagagcaagaaaagcggggcctct
ggggcctcaccgacccagaaacggaagaaggctgactccctccccggtctgagcagcact
gctgggtccttccccaaccgtaccgacggcagatctgcaaaacccaccaagctggcgtcg
aagtcggccgcctcagccaaagctgggtgtagcaccgtgactgactcctcctcttctgcc
tccacctcgtcctcctcctccaccagcgccaacagtgccaccgccacacagggcgccagg
ctcaagcagggcaaagaccagaacaaggcacgtcgctcccgctccgcctccagcccctcc
ccacgccgaagcacccgcgacaaggagcaggccaaagccgccgtctcgtccaagtttgag
tgggcggcccgcttcagtcccaaagtcaacctgccaaagcccaaactgtccctacccggc
tcctccaagacagagaccacctccaaacctgggccctcaggactacaagccaaactagca
agtttgaggaagtccactaagaagcgcagcgagtctcctccagcagagctccccagcttt
cggcggagcacacgccagaagaccacgggctcctgcgccagcaccagtctgtgcagtcgg
cgaggctcaggcctgggcaagcgcggggcagccgaagctcgccgacaagagaagatggct
gactcggacaacaaccaggacggggccaactcctcggccgcccgcactgacgaggccccg
cagggggcttcagggacagcttctagctcagttgccggagctgttgggatgaccacatcc
ggtgagagcgagtccgatgactctgaaatgggcagactccaagccctgctggaggccagg
ggtctacccccacacctctttgggcccttgggaccccgcatgtcccagctgtttcacaga
accataggcagtggagccagctccaaggctcagcagctgctgcagggcctgcaggccacc
ggcgacgagtcccagcagctccaggccgccatcgagatgtgccagctgctggtgatgggc
aacgaggagacgctaggaggcttccctgtgaagagcgtggtgcccgctctgatcacattg
ttacagatggagcataactttgacattatgaaccacgcctcccgtgctctcacttacatg
atggaggcgctgcctcggtcctctgctgtggttgtggacgccatccccgtcttcctggaa
aagcttcaggtgatccaattcattgacgtggcggagcaggccctgactgccttggagatg
ttgtcaaggcgacacagcaaagccatcctgcaggctggtggcctggctgactgtctgctg
tacttggagttcttcagcatcaatgcccagaggaacgccctggccattgccgccaactgc
tgccagagcatcacccctgacgagttccactttgtctctgactccctgccactgctgacc
cagagactctcacaccaggataagaaatccgttgaaagcacttgtctctgttttgccagg
ctggtggacaactttcaacacgaggagaacctgctgcagcaggtggcctcgcgggacctg
ctgaccaacatccaacagctgctggtggtcaccccgcccgtgctcagctcgggcatgttc
atcatggtggtgcgcatgttctccctcatgtgctccaactgcccctgtctggccgtgcag
ctcatgaagcagaatattgcggagactctgcgcttccttctgtgcggagcggccaacggt
agctgccaggagcagattgacctggtgcccaggagcccccaggagctctatgagctcacc
tcactcatctgcgagctgatgccctgcctgcccagagaaggcatctttgctgtggacctc
atgctgaagaagggcagtgcccaggccacagagggggccatctggcagtggagggacgac
cggggcctgtggcacccctacaaccgcatcgacagccgcatcattgagacggcccaccag
aacggagaggatgagatcagcctgtccaccctgggccgtgtctacaccatcgacttcaac
tctatgcagcagatcaacgaggacactggcacagcacggggtatccagaggaaacccaac
cccttagccaaccccactactgggggtcaccaggaggtgaggcgggaggacgcacgggcc
cagctgatgaaggaggaccctgagctggccaagtgcttcatcaagaccctgttcggggtg
ctgtacgaagtgtacagctcgtcggcgggcccagccgtcagacataagtgcctccgagcc
atcctcaggatcatcttcttcgccgatgccgagctcctcaaggacgtgctgaggaaccac
gctgtgtccagtcacattgcctccatgctgtccagccaggacctgaagattgtagtgggc
tctctgcagatggctgagatcctcatgcagaagctgcccgacgtattcagtgtcttcttc
agaagagaaggtgtgatgcaccaggtgaagaacctggctgagtcggaggccttcctcacc
agtcccccaaaggcgtgcaccagcggcacggctagcctgtgtaccaccaccatcagcact
gcgaccactactttggccaccaacgccaccccagacctgggctcacctagcttccagcac
agcatggacgactcactggacctcagcccacaggggcgattaagtgatgtgctgaagaga
aaacgtctgcctaagagagggcccagaaggcccaagtactctcctcccagggatgatgac
aaagtagacaatcaggccaagagtcctaccactactcagtcccccaaatcctccttcttg
gccagtctgaaccccaagacctggggcaagctgggcgcccagaccaacagcaccaactct
gagccctctcgcacggccggggtgagtggcctggcacgcgcgcttcccaaggactctgtc
tccaacaacagggacaagatcaaggcttggatcaaagagcaggcctgtaagtttgtggtg
cgctacttcaacactgaaaacattgatggcagcaaccccgcactaaatgtactacagaga
ctctgcaccgccacggaacagctcagcctgcagatggacggtggcgtggagtgccttgtg
gagatctgcagcatcgtgtcagagtcggacgtgtcatcgttcgagatccagcacagcggc
ctggtcaagcagctgctgctctacctgacctccagcagtgaccgtgacctggtcagccgt
gacgtccgcctcaagaggttcctgcacgtcttctacggttgcccgatcccggggatggag
ccggcaggccgcctggagccgtctgagaacgggcccttgctgtcactggtgcacaagatg
aacaactgcctaagtcagatggagcagttccctgtcaaggtgcatgacttccccagtggc
aacggcaacgggagcagagggtctcaggccctgaagttcttcaacacacaccaactcaag
tgtcagctgcagaggcacccggactgcaccaatgtgaagcagtggaaggggggcccggtg
aagatcgacccccttgccttggtacaggccattgaacgctacctggtggtccgaggttac
ggacgaatcagagaggaggacgaggacagtgacgatgatggttcagacgatgaaattgac
gaatcgctggcggcccaattcctgaactctggcagcgtgcgccaccggctgcagttctac
atcggcgaccacctgctgccctacaacatgacggtgtaccaggcggtgcggcagttcagc
ctgcaggcagaggaggagagggagtccacggacgacgaggccaacccgctcggacgggcc
ggcatctggaccaaaacccacaccatatggtataagccagtgagggaggatgaggatggc
agtaaggatgcggtgggagggaaaaggggccgggcacagactgcccccaccaagacctcg
ccccgcaacgccaagaaacaggacgagctgtggcacgacggcgtgtgtcccagtgtggcc
agcccgttggagatgtacctcatgtcggagcccccggagagcattacctttgacgacccg
tctctggatgtaaacctgctgctgagggtgctgcactccattagtagttactggttctac
ctgtacgacaatgctgtgtctaaggagatcatccccaccagtgagttcatcaacagtaaa
ctgacagccaaggccaaccgacagctgcaggaccctctggtcatcatgaccggcaacatc
cccacctggctcacagagctcggcaagacctgtcccttcttcttcccgttcgacacacgg
cagatgctcttctatgtgactgcttttgaccgcgaccgggccatgcagcgcctcctcgac
actaaccccgagatcaaccaatcagattctcaggacagccgcgtggcgccccgcctcgac
aggaaaaagcgaacgataaaccgtgaggagctgctgaagcaggcggagtcagtgatgcag
gacctaggcagctccagagccatgctggagatccagtatgagaacgaggtgggcacaggg
ctgggtcccaccctggagttctacgccctggtctcccaggagctgcagagggccgacctc
gggctgtggaggggtgaggaggtcaccctgtccaacccaaaaggaagccaagaagggacc
aagtacatgttcagctcccgggggctgtttgccgttcccttcggcaggacaaccaaaccg
gcgcacatcgccaaaatcaagatgaagttccgcttcctaggcaagctgatggccaaggcc
ataatggacttcagactgctggacctgccccttgggctgcccttctacaagtggatgctg
cggcatgagacttccatcagctcccacgacctggtcaacatcgacccaggcgtggccaag
tccatccagcacctggaggacatcatccgccagaagaagaggctggagcaggaccgctcc
cagacgagggagaccctgcagcaggctctggagagtctcaacatgaacggctgctctgtg
gaggacctgggcctggacttcaccctgcccggtttccctaacatcgagctgaagaagggt
ggcaaggacatccccgtcaccatctacaacttggaggagtacctcaggctggtggtctac
tggacgatgaacgaaggtgtgtcccggcagtttgaatctttcagggaagggtttgagtcg
gtcttccccctgcatcacttgcagtatttctaccctgaagagttggatcagctgctttgt
ggcagcaagtccgatacctgggacgtcaagaccctgatggagtgctgtcggcccgaccac
ggctacacccatgacagtcgtgctgtgaggttcctgtttgatgtgctcagcagtttcgac
gcagagcagcagagacttttcctgcagtttgtaacaggaagccccaggctgcctgttgga
ggtttccgtagtctgaacccgccgctgaccatcgtgcggaagacatttgagtcgacggag
aacccggatgacttcctgccgtcagttatgacctgtgtcaactacctgaagctgcccgac
tactccagcatcgagatcatgcgcaagaaactgttgatcgcggcccgcgagggccagcag
tccttccacctgtcctga
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