Coregonus clupeaformis (lake whitefish): 121564681
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Entry
121564681 CDS
T08357
Name
(RefSeq) cyclic nucleotide-gated channel rod photoreceptor subunit alpha
KO
K04948
cyclic nucleotide gated channel alpha 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
121564681
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121564681
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
121564681
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CLZ
cNMP_binding
NPR3
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
121564681
NCBI-ProteinID:
XP_041731782
LinkDB
All DBs
Position
Unknown
AA seq
682 aa
AA seq
DB search
MISTSSTRPFLVVVPRIAPNMATDTEEDSEDEIDETPPGPGRLFNVNNSNNNEEEEKKNK
KKDKKEKKEKKEKKKEKKKQKEQEEKEKEEKEKEEKEKEEKEKEEKEKKEKEEKEKKEKE
MKEGPKEAFVINPAGSLYYNWLLIITIPVMYNWTMIIARACFEELQDNHLVTWLILDYTS
DVLYLADMAFRTRTGYLEQGLLVKDKKLLQERYISSLQFKLDAVSMLPTDVFYIFLGINY
PEIRLNKLLRITRMMEFFTRTETKTNYTNLFRISILVMYIIIIIHWNACLYYSFSKSIGF
GSDPWVYPDLNDPEEPEFGELGRKYSFSLYWSTLTLTTIGETPSPELDSEFFFHVLDFLV
GVLIFATLVGNISSMISNISAARVEFQARIDNIKQYMQKWKVDKELELRVITWFDYLWTN
DKAQDERETLRYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLIELVLKLQPQVFSPGD
YICKKGDIGREMYIVKEGKLAVVADDGVTQFCVLGDGSYFGEISILAIKGSKAGNRRTAN
IRSIGYSDLFCLSKDDLMESLTEYPEAKGMLEEKGRQILLKDGLLELDPSKIIPETTEIE
EKVNRIYSNLELMQTKLKKLLGDYSTRQRATRERIAEIERLTGEDVAEEDLDEEEKEGRG
EEKKEGEAEEKKEEKKEEEEKR
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcacatcaagcactcgtccgttcttggtggttgtgcctcgcattgccccaaat
atggccacagacacagaggaggacagcgaggatgaaatagatgaaacccctcctggccca
ggacgtctgttcaatgtgaacaacagtaacaacaatgaggaggaggagaagaaaaataag
aaaaaggacaagaaagagaagaaagagaaaaaagagaaaaagaaagaaaagaagaagcaa
aaagagcaggaggagaaagaaaaggaggagaaagaaaaggaggagaaagaaaaggaggag
aaagaaaaggaggagaaagaaaaaaaggaaaaagaggaaaaggagaaaaaggagaaagag
atgaaggaggggcccaaagaagcgtttgtcatcaacccagcgggcagtctgtactacaac
tggttgttgatcatcacaataccagtcatgtacaattggaccatgataatagccagggcc
tgctttgaggagctgcaggataatcacctagtcacctggttgattctggactacacctct
gatgtcctctacctggctgacatggccttcaggaccaggacaggctacctggagcaaggc
ctgctggtcaaagacaagaagctgctgcaggagcgttacatcagcagcctccagttcaag
ctggacgccgtctccatgctgcccaccgatgtgttttacatcttcctgggaatcaactac
cctgagatccgtctcaacaaactcctccgaatcacgcgtatgatggagttcttcacccgc
accgagaccaagaccaactacaccaacctcttccgcatctccatcctggtcatgtacatc
atcatcatcatccactggaacgcctgcctctactactccttctctaagtccatcggcttc
ggctctgacccctgggtctacccggacctgaatgacccggaagagccagagttcggcgaa
ctggggaggaagtactccttcagcctctactggtccacgctgacgctgaccaccatcggc
gagacgccgtcaccggagctggactcagagttcttcttccatgtgctagacttcctggtg
ggtgtgcttatcttcgccaccctggtgggcaacatcagctccatgatctccaacatcagt
gccgcgcgggtcgagtttcaggcacgcatcgacaacatcaagcagtacatgcagaagtgg
aaggtggacaaggaactggagctgcgcgtcatcacgtggttcgactacctgtggaccaac
gacaaggctcaggatgaaagggagacgctgcgctacctgcccgacaagctcagggccgaa
atcgccattaacgtccacctagatactctcaagaaggtccgcatcttcgctgactgcgaa
gcgggcctgctgattgagctggtgctcaagctgcagccccaggttttcagccccggcgac
tacatctgtaagaagggcgacatcggccgtgagatgtatattgtcaaagagggcaagctg
gcggtggtggctgacgatggcgtcacgcagttctgcgtgctgggagatggcagctacttt
ggggagatcagtatcctagcgataaagggttctaaggcagggaaccggaggacagccaac
atccgcagcattggctactcagatctcttctgcctgtccaaggatgacctgatggagtcg
ttgaccgagtacccggaagccaagggcatgctggaggagaaaggtcgtcaaatcctgctg
aaggacggcctgctggaactggacccttccaaaattatccccgaaaccacagaaatcgag
gagaaggtgaaccgcatctacagcaacctggagctgatgcagaccaagctgaagaagctg
ctgggagactacagcaccagacagagggccacgagggaacgcatcgctgagatagagcgg
ctgactggagaggatgtggcagaggaggacctagatgaggaggagaaggagggaaggggg
gaggagaaaaaggaaggggaggcagaagagaaaaaggaggagaagaaagaggaagaggag
aagaggtag
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