Coregonus clupeaformis (lake whitefish): 121565510
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Entry
121565510 CDS
T08357
Name
(RefSeq) rab5 GDP/GTP exchange factor-like
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04137
Mitophagy - animal
cclu04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
121565510
04137 Mitophagy - animal
121565510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121565510
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
121565510
Protein recycling
Other Rab GTPase associated proteins
121565510
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
Rep_N
HCMV_UL139
Motif
Other DBs
NCBI-GeneID:
121565510
NCBI-ProteinID:
XP_041732043
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All DBs
Position
5
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AA seq
496 aa
AA seq
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MSHRPERRGIHVDQSELLCTKGCGFYGNTAWQGLCSKCWREEYQQTRHKQIQDDHALAER
LQMEEEAAYANNHQGAAQPQPAVAPFSKFEERKTKEKSRKVNTVTKFFTPSAKTPPKKDS
VPGEAQSTPSPSVSRKPLETDCTTQEFIDFLKTLKPGREIFKQCRAFTESMAYKRDLGAD
ELSECVQDFYQNLSDRLHTHFKGSSERVESVMDEVERYMMTRLYEEVFCPETTDDEKKDL
AVQKRIRALHWVTIEMLCVPVDEEIPEVSDNVVKAITDVIEMDSKRVPRDKLTCITRCSK
HIFNAIKTTKKEAASADDFLPTLIYIVLKANPPRLQSNIQYITRFCNPSRLMSGEDGYYF
TNLCCAVAFIEKLDGQSLNLSAEEFEIYMSGQASPQRPQAAPSPPGSAAFSQMNERLDLL
TGLGVRQERVMEGARRLESDLIDWRDGVEHKVQDVLERFPLEMHPPASPTASSAIDADNV
ENDLLPPPLQPQLFAG
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgagccaccggccggaacgtcgtgggatccatgtggaccagtcagagctgctgtgtacg
aagggatgtggtttctatggcaacacggcctggcagggcctctgctccaagtgctggcgg
gaggagtaccaacaaactagacacaaacagatccaggacgaccatgcactggcagagagg
ttacagatggaggaggaggcagcatacgctaacaaccaccagggggcagcccagccccag
cctgccgtcgcacccttcagcaagtttgaagagaggaaaaccaaggagaagtcacggaaa
gtcaacacagtgactaagtttttcactccctcagcaaagacaccacccaagaaagactct
gtccctggcgaggcccagtcgacccccagcccctcagtaagccgcaagcccttagagacg
gactgcaccacacaagagttcatcgacttcctcaagaccctgaaacctggtagggagatc
ttcaaacagtgccgggccttcacagagagcatggcctacaagagggacctgggtgctgat
gagctgtctgagtgtgttcaggacttctaccagaacctgtcagaccgcctgcacacacac
ttcaaagggtcgtcggagcgcgtagagagtgtgatggacgaggtggagaggtacatgatg
acacgtctctatgaggaggtcttctgtcctgagaccacagatgatgagaagaaagacttg
gccgttcagaagagaatcagggccttgcattgggtcaccattgagatgctgtgtgtccct
gtggatgaggagattcctgaggtgtctgataatgtggtcaaagccatcacagatgtgata
gagatggactcgaagcgtgtgcccagggacaagctgacctgcatcacgcgctgcagtaag
cacatcttcaatgccatcaagaccaccaagaaggaggcggcatctgctgatgacttcctg
cccaccctcatctacatcgtcctgaaggccaaccctccgcgactgcagtccaacatccag
tacatcacccgcttctgtaaccctagccgcctcatgagcggagaggacggatactacttt
accaacctgtgctgtgcggtggccttcatagagaagctggatggccagtctctgaacctg
agcgctgaggagtttgagatctacatgtcaggccaggcgtccccccagcggccccaggct
gccccctcccccccaggcagtgctgctttcagccagatgaacgagcgtctggacctgctg
acggggctgggcgtgaggcaggaacgcgtcatggagggagctcgccgcctggagagtgac
ctcatcgactggagggatggggtggagcacaaagtgcaggatgtgttggagaggttcccc
ctggaaatgcacccccccgcctcccccactgcctcttctgccatagatgctgacaatgtg
gagaatgacctcctgcctcctcctctccagccccagttgtttgccggctga
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