Coregonus clupeaformis (lake whitefish): 121565842
Help
Entry
121565842 CDS
T08357
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121565842
03036 Chromosome and associated proteins [BR:
cclu03036
]
121565842
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
121565842
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
121565842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
Spt6_S1
S1
S1_RRP5
SPT6_acidic
HHH_3
HHH_9
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
121565842
NCBI-ProteinID:
XP_041732161
LinkDB
All DBs
Position
6:9148971..9185640
Genome browser
AA seq
1749 aa
AA seq
DB search
MDFIEREAEESEEEFGSPENTEKKALKHARANDDEEEEEENTEDQDEDGNLRGLIDDGGD
EGEGEEEEEDEEEGKKDKEGDSDSGEEIGHRKRKRSFDDRLDDDDIDLIEENLGVKVKRQ
KFRRLRDMSDDEDEEGDEDVREAHEKDMIADEIFMGTGADEGEALDVPLHPGEDEEEDDE
ESDIDDFIVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGGDFDFAEFDTEAYEDAEEE
EEDADEESWDRPKKQAKKRVGRRSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRST
RVKPAEDDELEQEAEWIYRNAFSTLTISMQENADYLDRGPTTSFSRKGPSTIQKIKEALN
FMRNQHFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWTQLKTRKQNLRRLFQKMQGYQ
FEQISADPDKPLADGIRPLDTSDLERLKDVQSSDELGDVYNHFLLYYGRDIPKMQNAARS
SKKKLKKIKEVDEDGNEQEVEEEEEEEEEQSKGPDLKLASRRDMYSICQCAGLDGLAKKF
GLTPEQFGENLRDSYQRHETEQFPAEPMELAKDYICSQFSTAEAVLEGTRYMVAMQIARE
PLVRHVLRQTFQERAKINIKPTKKGKKDVDEAHYGYSFKYLKNKPVKELNGDQFLKMFQA
EEEGLLAINICIDLIGVKGYGGDHAYYEEIKQFYYRDEFSHQVQEWNRQRTLAIERSLKQ
FLYPQMAKELKNKLIAEAKENIIKACSRKLYNWLKVAPYRPDQQVEEEDEELMSEAQGKG
IRVLGVAFSSSRDTPVFCALVNGDGEVGDFLRLPYFLKRRNAWREDEREKKIHDIETLKK
FLNSKKPHIIAIAGENRDAQMVIEDIKRTASELEQESSFPTIGVELVDNELAMLYMNSKK
SEADFRDYPPLLRQAVSVARKIQDPLVEYAQVCSSDEDILCLKLHPLQEHVVKEDLLNAL
YCEFINRVNEVGVDVNRAMAHPYTQSLVQYVCGLGPRKGSHLLRILKQNNTRLENRTQLV
TMCHMGPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDE
SAEDANPAGALEEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLR
STYRGPNTEEIFNLLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDETGLWQC
PFCQQDNFPELSEVWNHFDSGSCPGQAIGVRCRMDNGVTGFIPTKFLSDKVVKHPEERVK
VGMTVHCRIMKIDIEKLSVDLTCRTSDLSDKNNEWKLPKDTYYDFDTETEDVKQEEEAKK
KQQRTTYIKRVIAHPSFHNINFKQAEKMMESMDQGDVIIRPSSKGENHLTVTWKVADGIY
QHIDVREEGKENAFSLGHTLWINTEEFEDLDEITARYIQPMAAFARDLLGHKYFQECNGG
DRKKMEEVLVKSKKEKPTFIPYYVSACRELPGKFLLGYQPRGKPRVEFVTVTPEGFRYRG
HIFPTVNGLFRWFKDHFQEPVAGITPSSSSRTRTPASINATPANINIADLTRAVNALPQN
MTSQMFSAIAAVTGQGQNPNTTPAGWASSQYGYTGGSSGGGGSSGGGGSSSAYHVFATPA
QQPIATPLLTPSYSYTTPTPSQQQTITTPQYPSSTPQSSHGSHGHGHRPSSTPSSTSSSR
HHRTPTPKATSHTAVDWGKMAEQWLQEKEAERKKTRPRMTPRPSPSPMIESTPMSLAGDA
TPLLDEMDR
NT seq
5250 nt
NT seq
+upstream
nt +downstream
nt
atggatttcatcgagagggaagcagaggagtctgaggaggaatttgggagtccagagaac
acagagaaaaaggcactgaagcatgctagagcaaatgatgatgaggaggaggaagaggag
aatacagaggaccaagatgaggatggaaacctccgtggtctgattgatgatggtggggat
gaaggagaaggggaggaagaggaagaggatgaggaagaagggaagaaagataaagaagga
gatagtgactctggggaggaaattggacaccgtaagaggaagagaagctttgacgaccgc
ttggatgatgatgatattgatctcattgaggagaatttgggagtaaaagtgaaaaggcaa
aagttccgtcgtttgcgagacatgtcggacgatgaggatgaggagggagatgaagacgtc
agggaggcccatgagaaggacatgatagcggatgagatcttcatggggacgggagcggat
gagggcgaagcattggatgtgcctttgcatcccggggaggatgaggaggaggatgatgaa
gagtctgatatcgatgactttattgtggacgatgacggacagcccttgaagaaacccaag
tggaggaagaagctgcctggatatacagatgcagcccttcaggaggcccaggagatattt
ggaggggactttgactttgccgagtttgacactgaagcctatgaagatgcagaggaggag
gaagaggatgcagatgaagagtcatgggaccggcccaagaagcaggccaagaagagggtg
ggtcgacgcagtatctttgagatctatgagcctagcgaactggagagcagtcacatgacg
gatcaggacaatgagatccgctccactgacatgccagagaggttccagctacgctccact
cgtgtgaagccagcagaggatgatgagctggaacaagaggctgagtggatctataggaat
gccttctctactctcaccatctccatgcaggagaatgcagactatttggacagaggtcca
accacttctttcagcagaaaaggccccagcaccatccagaagataaaagaggctttgaat
ttcatgagaaaccaacattttgaggttccgttcatagcgttctacaggaaagagtatgtg
gagcctgaactcaatatcaatgatctgtggaaggtttggcagtgggatgagaagtggacc
cagctgaaaacccgcaaacagaacctgagacgcctgttccagaagatgcaaggataccag
tttgaacagatctcagcagacccagataagccactggctgatggcattcgaccactagac
acttcagatttagagaggctgaaggatgtccagtctagtgatgaactgggcgacgtctac
aaccatttcctgctgtactatggccgggatattccaaagatgcagaatgcagccaggtcc
agcaagaagaagctgaagaagatcaaagaagtggatgaagatggtaatgagcaggaagta
gaggaggaggaagaggaagaagaggagcagtcgaaggggccggacctgaagcttgcgtct
cgcagggatatgtacagcatctgccagtgtgcaggactggatggcctggccaaaaagttt
ggtctgactccagagcagtttggagagaacctacgtgacagttaccagcgtcacgagacg
gagcagtttcctgctgagcccatggagctggctaaggactacatctgcagccaattcagc
acagcggaggcagtactggaggggactcgctacatggtggccatgcagatagctcgagag
cctctagtcagacatgtgctccgacagacgttccaggagagagccaagatcaacatcaaa
cccaccaagaagggaaagaaggatgtggatgaggcccattatggctactcctttaagtac
ctgaaaaacaagcctgtaaaggagctgaatggagaccagttcctcaagatgttccaggca
gaggaagagggcctgctcgccataaacatctgtattgacctgattggagtgaaggggtac
ggaggtgaccatgcgtactatgaagagataaagcagttttactacagagacgagttcagc
caccaggttcaggagtggaacagacagcgcactctggccatcgaacgatccctcaaacag
ttcctttacccgcagatggctaaagagctgaagaacaaacttattgcagaagcaaaggag
aacatcatcaaggcctgcagcaggaagctgtataactggctgaaggtggcgccctatcgg
cccgaccaacaagtggaggaggaggacgaggagctcatgtctgaggcccagggcaaaggg
atccgcgtgctgggagtggccttctcatccagcagagacaccccagtgttctgtgccctg
gtgaatggtgacggagaggtgggggatttcctcaggcttccttacttcctgaagaggagg
aacgcatggagggaggatgaaagggagaaaaagatccacgatattgaaaccctgaagaag
tttctgaacagtaagaagcctcacatcatcgctatagctggggagaacagggacgcccag
atggtgattgaagacattaaacgcacagccagtgagctggagcaggagtcctccttcccc
accatcggggtggagctggttgacaatgaactggccatgctctacatgaacagcaagaaa
tcagaggcagatttccgggactacccccctctcctgagacaggctgtgtctgtggccagg
aagatccaggaccccctggtggagtacgctcaggtgtgcagcagtgacgaggatatcctc
tgcctcaagttgcaccctttgcaggagcatgtagtgaaggaggacctgctgaatgctctg
tactgtgaattcatcaaccgggtgaatgaagtgggtgtggatgtgaaccgggccatggcc
cacccttacacccagagcctggtgcagtacgtctgtggcctggggcccaggaagggatcc
cacctgctcaggatcctgaagcaaaataacactcgtctggaaaaccgcactcagctggtc
accatgtgtcacatgggcccaaaggtcttcatcaactgcgctggtttcatcaagattgac
acagcttctcttggagatagtactgactcctatattgaggttctggacgggtcgcgggtg
cacccagagacctacgagtgggccaggaagatggccgtggatgctctggagtatgacgag
tcagcggaggacgccaacccggccggagcactggaggagatcctggaaaacccggagcgg
ctcaaagacctggacttggacgcctttgctgaggagctggaaagacagggctatggtaac
aagggcatcaccctgtatgacatccgtgctgagctgagctgcaggtacaaagacctgagg
tccacctacagaggacctaacacagaggagatcttcaacctgctcaccaaggagacacca
gagaccttctacattggtaaactgatcaccagtgtggtgacaggcattgctcaccggcgc
ccccagggggagagttatgaccaggccataaggaatgatgagacaggtctgtggcagtgt
cctttctgtcagcaggataacttccctgagctcagcgaggtgtggaatcattttgacagt
ggctcctgccctggccaagctattggggtccgctgtcgcatggacaacggagtcaccggc
tttatccccaccaagttcctcagtgacaaagtggtcaagcaccctgaagaaagggttaag
gtgggcatgacagtgcactgcaggatcatgaagattgacattgagaagctcagtgtggat
ctgacctgtcggacgtcagacctgtcggataagaacaacgagtggaagcttcccaaggac
acctactacgactttgacactgagacagaggatgtgaagcaggaggaggaggccaagaag
aaacagcagagaacaacctacatcaagagggtgatagcccacccatcgttccataacatc
aacttcaagcaggcagagaagatgatggagtccatggaccagggagatgtgatcatcagg
cccagcagtaagggagagaaccacctgactgttacttggaaggttgctgatggtatctac
cagcacattgacgtacgagaggagggcaaggagaacgccttcagcctgggacataccctg
tggatcaacaccgaggaatttgaagatctggatgaaatcacagccagatacattcaacca
atggctgcgtttgctcgcgatctgcttggtcacaagtattttcaagaatgcaatggtgga
gaccgaaagaaaatggaggaggtcttggtgaaaagcaagaaggagaagcctacattcatc
ccctactatgtgtctgcctgtagagagctgccagggaagtttctgctcggttaccagccc
cgcggaaaaccaagggttgagtttgtgactgtcacgcctgaggggttcagatacagaggc
cacatttttcccacagtcaatggactcttccgctggttcaaagaccatttccaggagcca
gtggcagggattactcccagcagcagcagtagaacacgaaccccagcctctatcaatgcc
acgccagccaatattaacattgcagatctgacccgtgcagtgaacgccctccctcagaac
atgacctctcagatgttcagtgccattgccgcggtaacgggccagggccagaaccccaac
accacacctgccgggtgggcatccagccagtatggctacactggtggcagcagcggcgga
gggggcagcagcggcggagggggcagcagtagcgcctatcacgtgtttgccacaccagct
cagcagcccattgctactccccttctgacgcccagctattcgtacaccactcccaccccc
agccagcagcagactatcaccacgccccagtaccccagcagcactccccagtcctcacac
ggatcacacggacatggacaccgcccttcctccacaccatcatcaacatcctcctcccgc
caccacaggacaccaacaccaaaggcaacttcccacacagcggtggactggggaaagatg
gccgagcagtggctccaggagaaagaggcagagcgcaagaagacgaggcccagaatgacc
ccacgaccttctcccagccccatgatcgagagcacgcccatgtccctcgctggagacgcc
acaccgctgctggatgagatggatcgctag
DBGET
integrated database retrieval system
