Coregonus clupeaformis (lake whitefish): 121566605
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Entry
121566605 CDS
T08357
Name
(RefSeq) scavenger receptor class F member 1-like
KO
K24318
scavenger receptor class F member 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121566605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121566605
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Phagocytosis
Scavenger receptors
121566605
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_2
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
121566605
NCBI-ProteinID:
XP_041732518
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All DBs
Position
5:26476751..26484132
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AA seq
957 aa
AA seq
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MGLYLTGLGLLLCCSLSSPQRLAPSGRNICQDLRDPSTLVCCTGWRQQGEECTIPVCDGE
QACQQDEVCVHPGVCRCRPGYYGAHCKTRCPPEFWAPDCRELCKCHPHGHCDPITGECTC
LPNRWGPLCQNTCKCGRHGHCHPVHGNCTCDEGWWTPTCAKQCQCYPGTSTCDPLTGRCQ
CAPGYWGQKCSLRCSCYISSCQQKTGACECQNGWWGPTCDRRCNCDLEHSECDAVSGECE
CQPGYKGAFCNEPCGPGEYGSGCKLSCGHCKGGQSCSVVDGVCMACEPGWNGTHCDRLCP
RGYHGNHCQDVCPRCRNGEPCDPRTGVCSRCDPGWTGPRCDEPCSNRTFGDTCSFLCSPC
FHGHCDHVTGSCVCGPGFQGQSCNITCPDQLYGFNCSSVCDCGEGTACHPATGACPYSGR
GALIAGLLVPLLLVLLGLVCCCCCCGGPTDGKDRVAVGDGGTSVRMKHHVYNVLANVSSA
VPCISVWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWLTDGSSFDSDEETGEVLYCVPPR
EDIPAVAGGEFQEFQHEMSSKCNMFPDPSAFSVSAEDMSLPFGIPRTSSNAKSKRPSVSF
AEGTRFSPKERRGSAQDLTPGAPRTKPKSPWGVLMLSALQAQGGKASEGEETETGEGGVD
GCGGGTGPLEDLGFSGEAGDPDVDRYTATPSRAMSTLQVPGAVVGRRRTISNAAVTRKGR
QTSGSTFDGQQAEMDKGMDKVTTVYVTVGKMGVGRPLSELELPSSEGPVQAMLRRLGSLQ
RHKDQEGGTKPKGKSPGMEGITKPPRRKLGARARVWEQGGPPPSGGEGPVGEGVPMRKPS
RRKQHAHHSSPAVMGNTDAGINTHPPPEDATATITPTRPLSSILKSVPEVAGSEVRDEKS
GLRGENGDSETESGYGVGPAGVVTDAVSLSEVIANEGVVASVDDGPNLYENVMIMHS
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgggcctatatctgacgggtctaggactactgctctgctgttccctctcctcccctcag
agactggccccctcagggagaaatatctgccaggacctcagggatccctccactcttgtc
tgttgtactggatggagacaacagggagaggagtgtactatacctgtgtgtgatggcgag
caggcctgccagcaggatgaggtgtgtgtacacccgggcgtctgtcgctgtcgacctggc
tactatggagcccactgcaagacacgctgccctccagagttctgggcaccggactgccgt
gagctgtgcaagtgccaccctcatgggcactgtgacccgatcacgggcgagtgtacgtgc
ctccccaaccgctgggggccactctgccagaacacctgcaaatgtggccgtcacgggcac
tgccaccccgtacacggcaactgcacctgcgacgagggctggtggacgcccacctgtgcc
aagcagtgccagtgctacccaggcacctccacctgcgacccactgaccggcaggtgtcag
tgtgccccggggtattggggtcagaagtgcagccttcgctgtagttgctacatatcatcc
tgccaacagaagacgggggcgtgcgaatgccagaacgggtggtggggtccgacgtgtgac
cgccgctgtaactgtgacctggagcacagcgagtgtgatgcggtcagcggggagtgtgaa
tgtcagcctgggtacaagggagccttctgtaatgaaccgtgtggacctggggagtatggc
agtggctgtaaactgagctgtggccactgtaaaggaggccagtcgtgttctgtggttgac
ggtgtctgtatggcctgtgagcctgggtggaacggcacacactgtgaccggctgtgcccg
cgcggttaccatggaaaccactgccaggacgtgtgcccgcgctgcaggaacggtgaacca
tgtgaccccaggacgggggtgtgttcacgatgtgatccaggatggactggacccaggtgt
gacgagccgtgctctaacaggacattcggggacacctgcagcttcctgtgcagcccctgt
ttccatggccattgtgatcacgtgacaggaagttgtgtctgtgggcctgggttccaggga
cagagttgtaacatcacctgtccagaccagctgtatggctttaactgttcctctgtctgt
gactgtggtgagggcaccgcctgtcacccagcaacgggggcgtgtccatacagtggtcgc
ggggctctgatcgctggtctcctggtccctttgctcttggtgctgctgggtctggtctgc
tgctgctgctgctgtggaggacctactgacggcaaagacagggtagcagtgggtgacggt
ggtacctctgtccgtatgaagcatcatgtgtataacgtcctggccaacgtgagctctgct
gtaccctgtatctctgtctggtcctctgggctacccagagtcacagtgtcccaccacgac
cctgagctgacgttcaaccacagcttcatagagcctccctcctcaggctggctgacggac
ggatcctccttcgacagtgatgaggagaccggagaggtgctctactgtgtcccccccaga
gaagacatcccagcagtggcgggcggtgagttccaggagttccagcatgagatgagttct
aagtgtaacatgttccccgacccctctgccttcagcgttagtgcagaagacatgtccctc
ccctttggcatcccccgcacctccagcaatgccaagtccaaacgcccctccgtctccttc
gccgaaggcaccaggttcagccccaaggagcgccgaggctctgcccaggatctgacaccc
ggggcccctcgcaccaaacccaagtccccctggggggtcctgatgctgtcagccctccag
gcccagggagggaaggcctcagagggggaagagacggagacaggtgaggggggggtggat
ggatgtggaggtgggactggaccattggaagacctaggattcagtggtgaagcaggggat
cccgatgtggacaggtacacagccaccccgtcccgagccatgtctaccctgcaggtgcct
ggagcagtggtagggcgaagacgcaccatatccaacgccgctgttaccagaaagggcagg
caaacatcagggtccacattcgatggccagcaggcagagatggataaagggatggacaag
gtgacaacagtgtacgtgacagtggggaagatgggggtgggaaggcccctgtctgaacta
gagctccccagctcggagggcccggtccaggccatgctacgcaggctaggcagcctccag
agacacaaagaccaggaggggggaactaagcccaaggggaagagcccggggatggagggg
atcaccaagccccccaggaggaagctgggggccagggccagagtgtgggagcaggggggt
cccccaccctcggggggggagggtcctgtaggggaaggtgtacctatgaggaaacccagt
aggaggaaacagcacgcccaccacagctcgcctgctgtcatgggaaacactgacgctggc
attaacactcaccccccaccagaggacgccactgccaccattacgcccacaaggcccctg
tcctccattttgaaaagcgtgccagaggtcgctgggtcagaggtcagggatgaaaagtca
gggctgaggggagagaacggcgactctgagactgagagtggatatggagtcgggccagct
ggagttgtaacggacgctgttagtctgagtgaagtcatcgccaatgaaggagtggtggcc
agtgtggacgatggacctaacctttatgagaacgtgatgattatgcattcctaa
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