Coregonus clupeaformis (lake whitefish): 121566815
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Entry
121566815 CDS
T08357
Symbol
nectin1b
Name
(RefSeq) nectin cell adhesion molecule 1b isoform X1
KO
K06081
poliovirus receptor-related protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03266
Virion - Herpesvirus
cclu04514
Cell adhesion molecule (CAM) interaction
cclu04517
IgSF CAM signaling
cclu04520
Adherens junction
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
121566815 (nectin1b)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
121566815 (nectin1b)
04517 IgSF CAM signaling
121566815 (nectin1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
121566815 (nectin1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121566815 (nectin1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121566815 (nectin1b)
04090 CD molecules [BR:
cclu04090
]
121566815 (nectin1b)
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
Nectin family
121566815 (nectin1b)
CD molecules [BR:
cclu04090
]
Proteins
121566815 (nectin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C2-set_2
V-set
Ig_3
Ig_2
I-set
ig
TM_ErbB1
Ig_PVRIG
Phage_Coat_B
DUF4786
Motif
Other DBs
NCBI-GeneID:
121566815
NCBI-ProteinID:
XP_045069089
LinkDB
All DBs
Position
Unknown
AA seq
499 aa
AA seq
DB search
MAMLASVWIVLLAVNIEAGDGQSVQMDSIKSGFVGSQVELRCIFVNSNPPVKISQVTWQK
FLNGTKQNVAIANPSLGVSVLPPFKERVTFKQPAVRHRTPSLEDTTIMFSNLRLSDEAAY
ICEYTTFPAGNRENMVNLTVFARPQNHMTLTTPTIVARPQKRKMTVATCLSANGKPQSVI
KWDTRLKGEATFQETQNANGTVTVRSNYVVVPSRETHRQKLTCIVTYRDERMTDSIVLNV
QYEPEVKIEGFDGNWYLNRQDVSLTCNADANPPVTVYQWKVVNGSLPSTVEIRNNSLIFK
GAVTYELAGTYVCDATNGIGTRTGLVQVNVTEFPTNPPPGDREIPQEQHNAGAAIGGAVG
GVVLLAAAATLLFVFLRRRQRTFKGDYSTKKHVFGNGYSKAGGLSAHPPIPNNLQYPDDS
EDEKKPAQIAVTGGFQASQCDFDRDAEDLKRSYFTVDEGESRDYDKQTLAFQYDPEPEIA
DDMVSQTDGSVISKKEWYV
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgttggcgagcgtttggatagtcctcctggctgtcaacatagaagctggagat
ggacagagtgtccagatggactccattaagtcaggcttcgtgggttcccaggtggagctg
cgttgtatcttcgttaactccaaccccccggtcaagatctctcaggtcacatggcagaag
ttcctgaacggcaccaaacagaacgtggccatcgccaacccctcgctgggggtgtccgtg
ctcccgcccttcaaggagagggtaaccttcaagcagccggcggtccgtcaccgcaccccg
tctctggaggataccaccatcatgttctccaacctgaggctatctgatgaggccgcatac
atttgcgagtacaccactttccctgctgggaaccgagagaacatggtcaacctcactgtg
tttgcgcgacctcagaatcatatgaccttgaccacgcccaccatcgtggcccgcccccag
aagcggaagatgaccgtggcaacctgcctctcggcgaatggaaagcctcagagcgtgatc
aagtgggacacgaggctgaagggcgaagccacgttccaagagacgcagaatgccaacggc
acggtgaccgttaggagcaactacgtggtcgtgccgagcagggagacacacagacagaaa
ctcacctgcatcgtaacctaccgcgacgagaggatgactgacagcatcgtgctcaacgtg
cagtatgaaccggaggtgaagattgagggcttcgatggtaactggtacctgaaccgtcag
gacgtcagcctcacctgcaacgctgacgctaaccctcctgtcaccgtctaccagtggaaa
gtggtgaatggatctcttcccagcaccgtggagattcgtaacaactctctgatcttcaag
ggggcggtgacctatgagctagcagggacctacgtgtgtgatgccaccaatgggatcggg
actcgtactggcctggtccaggttaacgtcactgaattccctaccaacccgccacctggg
gaccgtgagatcccgcaggagcagcacaatgcgggagccgccatcgggggcgccgtgggc
ggggtcgtcctgttagctgctgccgccaccctgctcttcgtgttcctgcgccgccgccag
cgcaccttcaagggcgactacagcaccaagaaacacgtgtttgggaacggctacagcaag
gccgggggcctgtctgctcaccctcccatccccaataacctgcagtacccagacgactcg
gaggacgagaagaagcctgcccagatcgctgtgaccggagggttccaggcaagccagtgt
gattttgacagagacgcggaggacttgaagaggtcctatttcacggtggacgaaggagag
agccgagattacgacaaacagactctggctttccagtacgaccccgagccggagatagcc
gacgatatggtgtcccaaaccgatggctctgtaatttcaaagaaagagtggtatgtgtag
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