Coregonus clupeaformis (lake whitefish): 121566822
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Entry
121566822 CDS
T08357
Symbol
smarcd2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121566822 (smarcd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121566822 (smarcd2)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121566822 (smarcd2)
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121566822 (smarcd2)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121566822 (smarcd2)
PBAF complex
121566822 (smarcd2)
GBAF(ncBAF) complex
121566822 (smarcd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
121566822
NCBI-ProteinID:
XP_041732640
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All DBs
Position
1:32649019..32673962
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AA seq
494 aa
AA seq
DB search
MTSRGGFPGTPMNPSVNPMNAGHAGGGMRIPGIQQNSGFRAMNATPQYHQHPGMPPNRGI
PMGPMGGPGPSYGGGNMPLRTGMGPSAMDASRKRFLQQQQQGGLGGPRRGKRRRMADKVL
PQRIRDLVPESEAYMDLLAFERKLDQTIARKRMEIQEAIKKPITQKRKLRIYISNTYTPG
KPEGEEAEKVSSWELRVEGKLLEDPGKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRM
PTTQETDGFQVKRPGDVSVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRASIMQALWL
YIKNNKLQDSHEKEYINCNRYFRQILGCTRMRFSEIPMKLAGLLQHPDPIIINHMISVDP
NDQKKTACYDIDVEVDDPLKAQMNGFLSSTTNQQEIATLEMKIHETIESINQLKTQRDFM
LSFSNNPQDFIQDWLKSQSRDLKLMTDVAGNPEEERRTEFYQAPWVPEAVGRYVYSKVQQ
RRQELEQVLGIRLT
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaagagggggttttccaggtactccgatgaaccccagtgttaaccccatgaac
gctggacatgcaggcggtggaatgaggataccaggaatccaacagaattcgggtttccga
gccatgaatgccactcctcagtaccatcagcaccctggtatgccacccaacagggggatc
ccgatggggccaatggggggccctggaccctcttatgggggcgggaacatgcccttacgc
acaggaatggggccgtcagccatggacgcctcccgaaagcgattccttcaacaacaacag
cagggggggctgggaggcccaaggcgtggcaaaaggcgcaggatggccgacaaggtgctt
ccacagcggatccgagacctggttccagagtctgaggcctacatggacctgctggccttt
gagaggaagctggaccagaccatcgcacgcaaacgcatggagatccaggaggccatcaaa
aagcccattacgcaaaagcgcaagttgaggatctacatatccaacacctacacacccggc
aagccagaaggtgaagaggcagaaaaagtgtcatcctgggaactaagggtggagggaaaa
ctccttgaggatcctgggaaacagaagaggaagttttcgtctttctttaagagtctggtc
attgaactcgataaggaactgtatgggcctgataaccacttggtggagtggcacaggatg
cccaccacccaagagacagacggcttccaggtgaagagaccaggggacgtgagcgtaaaa
tgcaccctgctcctaatgctggaccaccagcccccacagtacaagctggacccgagactg
gcccggctgctaggtgtacacacccagacacgggccagcatcatgcaggcgctgtggctt
tacatcaagaacaacaagctgcaggacagccacgagaaggagtacatcaactgcaaccgc
tacttcagacagattttaggctgcacacgtatgcgtttctctgagattcccatgaagctg
gcgggacttctgcagcatcctgaccccatcatcatcaatcacatgatcagcgttgacccg
aatgaccagaagaagacggcgtgctacgacattgacgtggaggtggatgatcctctgaag
gcccagatgaatggtttcctgtcctcaactaccaatcagcaggagatcgctaccctggag
atgaagatccacgagaccatagagtctatcaaccagcttaagacccagagagacttcatg
ttgagcttcagcaacaacccacaggacttcatccaggactggctcaagtcccagagtcga
gacctcaagttgatgacggacgtggcaggcaacccagaagaggagaggaggacagagttt
taccaggccccctgggtaccagaagctgtgggccgatacgtctactctaaggtgcagcag
agaagacaggagttggagcaggtgctgggaatccgactcacctga
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