Coregonus clupeaformis (lake whitefish): 121566829
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Entry
121566829 CDS
T08357
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121566829 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121566829 (cpsf3)
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121566829 (cpsf3)
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121566829 (cpsf3)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121566829 (cpsf3)
U7-dependent histone pre-mRNA processing factors
121566829 (cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Gp58
Big_4
Motif
Other DBs
NCBI-GeneID:
121566829
NCBI-ProteinID:
XP_041732644
LinkDB
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Position
33:complement(35685902..35692482)
Genome browser
AA seq
690 aa
AA seq
DB search
MAAKRKADLSVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
ILYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTIHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAINVNNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYSVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADQ
KCQQGQRVSGILVKRNFSYHILTPSDLSNYTDLAMSTVKQTQAIPFTGPISLLASHLRNL
AGDVEEVESADKITLRIFKNVTLVHEAGMVVLEWIANPLNDMYADAVTTVVLEVQSNPKA
QKVMEHKKEGVELDVFQQRLEIMLHDMFGEDCVDFKDNKNLTVTVDGNTAFICPETRTVQ
YEEGSAEDETLREMVELAVQRLYDALNPAI
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaaacgcaaagctgatttatcggtgcctgcagaggaaagtgatcagctcctc
atcagacctcttggagctggacaggaggtgggaaggtcatgcatcattctggagttcaag
ggacggaaaatcatgctggactgtggaatccacccaggattggagggaatggatgctctt
ccctatattgacttgatcgatccggctgagatagacctgcttcttatcagccatttccac
ttggaccactgtggagccttgccttggtttctccagaagaccagtttcaaaggaaggacc
ttcatgacccacgccaccaaagccatctaccgctggctgctgtcagattatgtcaaagtc
agtaacatctcagccgacgacatgctgtacacagagacagacttggaggagagcatggac
aagatcgagaccatcaacttccatgaggtgaaggaggtggccggcatcaagttctggtgt
taccatgccggtcacgtcctgggggcagccatgttcatgatcgagatagctggggtgaag
atcctgtacacaggtgacttttcccgacaggaggacagacatctgatggcagcagagatc
cccagcgtcaagcctgacatcctcattactgagtccacgtatggaacacacatccacgag
aagagggaggagcgggaggcccggttctgcaacacaatccatgacatcgtcaacagagag
ggccgctgtctcatccctgtgttcgccttgggccgagcccaggaactgctgctcatcctg
gacgagtactggcagaaccacccggagctccatgacattcccatctactacgcgtcgtct
ctggccaagaagtgcatggccgtctaccagacctacgtcaacgctatgaacgacaagatc
cgaaaggccattaacgtcaacaaccccttcgtcttcaagcacatcagcaacctcaagagc
atggatcactttgatgacatcgggcccagtgtggtgatggcttctccgggtatgatgcag
agtggtctgtccagagagctatttgagagctggtgcaccgataagaggaacggcgtcatc
atcgccggctactccgtggagggtaccctcgccaagcacatcatgtcagagccagaggag
atcaccaccatgtcaggccagaagctgcagctgaagatgtctgtggactacatctccttc
tcagcccacactgactaccagcagaccagcgagttcatcagggctctcaaaccccctcat
gtgatcctggtgcacggggagcagaatgagatggcccgtctcaaagctgctctgatcaga
gagtacgaggacaatgatgaggtccacatcgaggtgcacaacccccgaaacactgaggcc
gtcacactcaacttcagaggagagaagctggctaaggtgatgggctccctggctgatcag
aagtgtcagcagggccagagggtgtctgggatcctggtcaaacgcaacttcagctaccac
atcctcaccccctcagatctgtccaactatacagacctggccatgagcacagtgaagcag
acccaggccattcccttcactggacccatctctctgctggccagccatctacgcaacctg
gcaggggatgtggaggaggtggagtctgcagataaaatcacactcaggatcttcaagaat
gtcacgctggtgcacgaggctggcatggtggttttagagtggatcgccaaccctctgaat
gacatgtatgctgatgcggtcaccacagtggttctggaggtccagtctaaccctaaagca
cagaaagttatggaacacaagaaagaaggtgtagaactggatgtttttcagcagaggctg
gagattatgcttcatgacatgtttggggaggactgtgtggacttcaaggacaataagaac
ctgacagtaacagtggacgggaatactgccttcatctgcccagagaccagaacggtgcag
tatgaggagggcagtgctgaagacgagaccctgagagagatggtggagctggctgtgcag
aggctctatgatgctctcaaccctgcaatctga
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