Coregonus clupeaformis (lake whitefish): 121566843
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Entry
121566843 CDS
T08357
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121566843 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121566843 (dhx36)
03012 Translation factors [BR:
cclu03012
]
121566843 (dhx36)
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121566843 (dhx36)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121566843 (dhx36)
Translation factors [BR:
cclu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121566843 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
NB-ARC
ATPase
NPHP3_N
AAA_16
Tn7_Tnp_TnsA_C
Motif
Other DBs
NCBI-GeneID:
121566843
NCBI-ProteinID:
XP_041732656
LinkDB
All DBs
Position
5:complement(30723318..30773228)
Genome browser
AA seq
1069 aa
AA seq
DB search
MSYGGYGGRGGRRGGGRGGRGFGRDGSRERWDRLAGSSGGGHPRNTESESREDRGERGGR
GGGPNRPPPHLKGREIGLWYAKWGGLKRKENERKSRAVVQMDESREQHITNLLNTVQRGP
TCPGSAREAHPSTSDHWRSAPSAPDRGGHCYFDGDEPSQDVLKMEFKQEKKKDEERPVQN
TPLTSQRYFPQDVLKAEPQEEREEKKERRGKDKDLEYLFQEVVRENALDQQLKRDLERKR
ADSKYLDMLKFREKLPSFGKKEELVELIRSSQVLVVSGETGCGKTTQVTQFILDDYIERG
MGSVCRVVCTQPRRISAISVAERVAAERAESVGDGNSCGYQIRLQSRLPRKQGSVLYCTT
GIILQWLRSSPLLSTISHLVLDEIHERNLHSDVLLIIVKDLLRVRQDLKVILMSATLNAE
KFSKYFDNCPMIHIPGMTFPVQEFLLEDVLEMIRYRPQKQERRPRWKRGFMQGHNSRPEK
EQKEAEYKESWPCYARTLRDKYSDSTIDVLEMMDEDDKIDLELIVQLIRHIVLSQEEGAI
LVFLPGWDNISGLNDLLMAQQMFKSDGFVIIPLHSLMPTVTQTSVFKRPPPGVRKIVIAT
NIAETSITIDDVVFVIDGGKIKETHFDTQNNISTMTAEWVSLANAKQRRGRAGRVCPGKC
YHLYNGLRASLLDAYQLPEIMRTPLEELCLQIKILKLGPIAEFLRKALDPPTEEAITLAI
THLMDLNALDRSEALTPLGFHLARLPVEPHIGKLILFGALLGCLDPVLTIAASLSFKDPF
FIPMGKEKVADMRRRTLSRDSKSDHLTIIYAFTGWEEAKRRGYKFEREFCWDNFLSANTL
QMLHNMKAQFAEHLLGAGFISSKNAKDPDSNINSENEKLIKAVIVAGLYPKVAMIKPSGS
KKRPVRVYTKTDGKVCIHPKSVNAEETQFNYTWLIYHLKMRTSSIFLYDCTEVSPFSLLF
FGGDVTIQMDQDQETIAVDDWIVFQSPARIAHLVKNLKKELDSLLEEKIRSPAPVDWSDR
QSKDCAVITAIIDLITTQERPNVNAANTSWRNTAPRGRRQYYSNDDDEY
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgagttatggaggttatgggggcagaggaggccgaagaggtggcggaagaggaggtcga
ggattcggacgggatgggagccgggagaggtgggaccgcctagctgggtcgagtggcggt
ggacacccgcggaacaccgaatcagagtcgagggaggaccggggagaacggggaggaaga
ggtgggggaccaaaccgtccacccccacatctaaagggccgggagatcggactgtggtac
gccaaatggggaggcttgaagaggaaagaaaatgagagaaaatcgcgggcagtggttcag
atggatgagtccagggaacagcatatcactaatctgctgaacactgtccagagaggaccg
acatgcccgggctcagccagggaggcccacccctccacatctgaccactggcgttcagcc
ccgtcagcaccggacagaggcggccactgttactttgatggtgatgagccctctcaggat
gtcctgaagatggaattcaaacaagagaagaagaaggatgaggagaggccagtacagaac
actccactcacatcacaacgttacttcccacaggatgtccttaaagctgaaccgcaagaa
gagagggaggagaagaaggagaggagggggaaggataaagatctggagtacttgtttcag
gaggtggtcagggagaatgccctggaccagcagttaaagagagacctagagaggaagagg
gcagactctaaatacctagacatgctgaaattcagggaaaagcttccatcatttggaaag
aaagaggagttggtggagttgatcagatccagccaggtgctggtggtcagtggggagacg
ggctgtggtaagaccacccaggtgactcagtttatcctggatgactacatagagaggggc
atgggttcagtctgcagggtggtctgcacccaaccacgacgcatcagtgccatatccgta
gcagagcgggtggctgcggagagggccgagagtgtgggggacgggaactcctgtggttat
cagatccgcctgcaaagtcggttaccacggaaacagggctcggtgctgtattgtacaacg
ggtattattctacagtggctccgctcctcccctctgctgtccaccatcagccacctggtt
ctagatgagattcatgagaggaaccttcactctgacgttctgctcatcatcgttaaggac
ctgctccgagtccgacaggacctcaaggtcatcctcatgagtgccacgctcaacgctgag
aagttctccaaatactttgataactgtcctatgatccacatcccggggatgaccttccca
gtgcaagagttcctactggaggatgtgttggagatgattaggtaccgtccccagaagcag
gagcggaggcccaggtggaagaggggtttcatgcagggtcacaactcccgaccagagaag
gagcagaaagaggcagagtacaaggagagctggccctgctacgcccgcaccctccgagac
aagtactctgacagcaccatagatgtgttggagatgatggacgaagatgataagattgac
ctggagctcattgtgcagctgatcagacacatcgtgctgagccaggaagaaggagccatc
ttggtattcctgccaggttgggacaacatcagtggcctcaacgacctcctcatggcccag
cagatgttcaaatcagatgggtttgtgatcattcccctgcactccctgatgcctactgtc
acccagacctcggtgttcaaaaggccccctccaggagtcaggaagattgtcattgccacc
aatatcgctgagaccagtattaccatagatgatgtggtgtttgtgatagatggcggaaag
attaaggagactcactttgacactcagaacaacatcagcacgatgactgcggagtgggtc
agcctagccaacgccaaacagaggagaggacgtgctggcagggtgtgtccagggaagtgt
tatcacctgtataatggcctgagggccagtctactagatgcctaccagctacctgagatc
atgcgcacgccactggaggaactgtgtctgcagatcaagatcctcaagctgggtccaata
gcggagttcctgaggaaagctctggaccctcctacagaggaggctatcactctggccatc
acacacctgatggacctcaatgccctggaccgctcagaggctctgaccccgttggggttc
cacttggccaggctgcctgtagagcctcacatcgggaagctgattctgttcggagctctg
ctgggctgtctggaccctgtcctcactatcgctgcctctctcagcttcaaggaccccttc
ttcataccaatgggtaaggagaaggtggcagacatgaggagaagaactctgtccagagac
tcaaagagtgaccacctcaccatcatctatgctttcacaggctgggaggaagctaagcga
cgcggctacaagtttgaacgagagttctgctgggacaacttcctgtcagccaatacactc
cagatgctgcacaacatgaaggctcagtttgctgagcacctgctgggggctggcttcatc
agcagcaagaacgccaaagaccctgactctaacatcaactcggagaatgagaagctgatc
aaggctgtgatagtggcaggtctctaccccaaagtggccatgatcaaacccagtggcagc
aagaagagaccggtgagggtgtacactaaaactgatgggaaggtgtgtatccaccccaag
tcagtgaatgctgaggagacccagtttaactacacatggctcatctatcacctcaagatg
aggaccagcagtatcttcctgtacgactgtacggaggtatctccgttctccctgctgttc
ttcggaggtgacgtcaccatccagatggatcaggaccaggagaccatcgctgtggatgac
tggatcgtcttccagtcccccgcacgcatcgctcacctcgtcaagaatctgaagaaggag
ctggactctctattggaagagaagatccgaagccccgcccctgtggactggagcgaccgc
caatccaaagactgtgctgtcatcacagccatcatagacctcatcaccacccaggagagg
cccaatgttaacgcggctaacactagttggaggaacactgcccctagaggacgtcgccag
tattacagcaatgatgatgatgagtactaa
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integrated database retrieval system
