Coregonus clupeaformis (lake whitefish): 121567109
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Entry
121567109 CDS
T08357
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121567109
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121567109
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
NGL family
121567109
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_9
LRR_14
ig
V-set
Ig_2
LRRNT
DUF7617
Ig_6
Motif
Other DBs
NCBI-GeneID:
121567109
NCBI-ProteinID:
XP_041732984
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Position
1:complement(33665678..33679281)
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AA seq
752 aa
AA seq
DB search
MRVVMVTSPSTPSPLLWLVQLLLWLHHHGPQLTEAAPPCPNPCSCSNQASRVICTRKSLV
EVPDSISVNTRYLNLQENTIEVIKSDTFKHLRHLEILQLSKNHIRQIEVGAFNGLPNLNT
LELFDNRLTLVPSQAFEYLSKLRELWLRNNPIETLPAYAFHRVPSLRRLDLGELRKLDYI
SEAAFEGLVNLRFLNLGMCGLKDIPNLTPLVRLEELELSGNQLGNVRPGSFQGLVSLRKL
WLMHSKVTVIERNAFDDLKNLEELNLSHNTLHSLPHDLFTPLHQLERVHLNHNPWVCNCD
VLWLSWWLKETVPSNTTCCARCHAPPGLKGRYIGELDQSHFTCYAPVIVEPPTDLNVTEG
MAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCMV
TNSAGNTTATAVLNVSTSDSSNPFSYFTTVTVETVETNNGEDSAARQYINETYVPPDYLG
PTVSGGVLGKGRAGFTISPSRSSLSSLSPRATRATEKAVTVSIMEVTNIPGLDDVMKTTK
IIIGCFVAITFMAAVMLVVFYKLRKQHQLHKHHGPTRAIEIINVEDEIGAGAGSGISGGS
TMQSGCGGDGTLRMHHPEIVNLPNIGRSEHLNHYYKANNFNNNVMGLSIGTGAGAGTLSN
KNNPSPLNQQGQDIPISCTQVPITSATFQTMSGNGTNTNPLSVSPPLPMSLPMSPMGLHG
SIKGFMGQNQNPQMEPLLFKGNSKENVQETQI
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgttgtcatggtgaccagcccctccaccccttcccccctcctctggttggtccag
cttttactttggctccaccaccatggacctcagctaacagaggccgcgcccccatgtccc
aacccctgtagctgctccaatcaggcaagccgagtcatctgtacaaggaagagtttagtg
gaagtaccggacagtatttctgtgaacacaagataccttaacctacaagagaacacgatt
gaggtgataaagtctgacacgttcaagcacctgcggcatttggaaatcctgcagctctcc
aagaaccacatccgacagatcgaggtgggcgcgttcaatggcctgcccaacctcaacacc
ctggagctcttcgacaaccgcctcacgctggtaccgtcgcaggcctttgagtacctcagc
aagctgcgggagctctggctacggaacaaccccatcgagacgctgccggcatatgccttc
caccgcgttccctccctgcgccgtctcgacctgggcgaactcaggaagctggactacatc
tctgaggccgccttcgagggcctggtcaacttgcgtttcctgaacctgggtatgtgcggt
ctgaaggacatccccaacctcacacccttggtccgactggaggagctggagctgtctggg
aaccagctggggaatgtccggcccggctccttccagggcctggtgtcgctgcgcaaactg
tggctcatgcactccaaggtgacggtcattgagcgcaatgccttcgacgacctgaagaac
ctggaggaactcaacctgtcccacaacactttgcactcgctgccccacgatctcttcacc
ccgctgcaccagttggagcgggtgcacctcaaccacaacccctgggtgtgcaactgcgat
gtcctgtggcttagctggtggctgaaggagacggtgcccagtaacaccacatgctgtgcc
cgctgccacgcgcccccaggcctgaagggccggtacataggtgagctggaccagagccac
ttcacatgctacgctcctgtcattgtagagccacccaccgacctcaatgtcacagagggc
atggctgccgaactgaagtgtcgcaccggcacctccatgacgtctgtcaactggctcacc
ccaaatggcaccctcatgacgcatgggtcgtaccgtgtcaggatctcagtccttcacgac
ggaaccctgaatttcaccaatgtgactgtgcaggacacgggccaatacacctgcatggtg
accaactccgccggcaacaccacggcaaccgcagtgctcaacgtgtccacctccgactcc
agcaaccctttcagctacttcaccaccgtcactgtggaaaccgtggaaactaacaatggg
gaggattccgctgcaaggcagtacatcaacgaaacctacgtaccgccagattacctgggt
cccactgtttcaggaggggtactgggtaaaggcagggctggattcaccatatctccatca
cgctcatctctctcctctctgtccccacgagccaccagagccactgaaaaggcagtcaca
gtgtcgataatggaggtcacgaacatccctggcctggacgatgtgatgaagaccaccaag
atcatcatcggctgcttcgtggccatcaccttcatggcggccgtgatgctggtggtcttc
tacaagctgaggaagcagcaccagctgcacaagcaccacggccccacccgcgccatcgag
atcatcaatgtggaggatgagatcggtgccggggccgggagcggcatctcagggggatcg
actatgcaatccgggtgcggaggagacggaaccttgaggatgcatcacccggaaatagtc
aaccttcccaacatcgggcgatcagagcatcttaaccattactacaaggccaataatttc
aacaacaacgtgatgggtctgagcattgggacaggggcaggcgccggtactctaagtaac
aagaataacccgtccccacttaaccagcaaggccaggatatccccatctcctgtacacag
gttccaatcacctcagccactttccagaccatgtccggaaacggcaccaacaccaaccct
ctttctgtttccccacctctgccgatgtccctccccatgtcccccatgggattacatgga
tcgatcaagggtttcatgggtcagaaccagaatccacaaatggagcctcttctgttcaag
ggaaactcaaaggaaaacgttcaagagactcaaatctga
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