KEGG   Coregonus clupeaformis (lake whitefish): 121567272
Entry
121567272         CDS       T08357                                 
Name
(RefSeq) collagen alpha-5(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu04382  Cornified envelope formation
cclu04510  Focal adhesion
cclu04512  ECM-receptor interaction
cclu04518  Integrin signaling
cclu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    121567272
   04518 Integrin signaling
    121567272
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    121567272
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    121567272
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    121567272
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cclu04147]
    121567272
   00536 Glycosaminoglycan binding proteins [BR:cclu00536]
    121567272
Exosome [BR:cclu04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   121567272
Glycosaminoglycan binding proteins [BR:cclu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   121567272
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 121567272
NCBI-ProteinID: XP_041733100
LinkDB
Position
6:7681324..7720441
AA seq 1127 aa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NT seq 3384 nt   +upstreamnt  +downstreamnt
atgcccccaggagacagggggcctgtgggctcacctggttctccaggagttcctgggagc
gatgggactgacggggtccctggatacccaggactgaaaggccaacctgggctaaagggc
aaccctggacctccggggcccaagggtgatcggggcgatgccggctctcagggtgtgtgt
ggacggtcaggccagatggggactcagggccccccaggtgtggggcccccagggggccct
ggacagaagggcatcctgggggtgcaaggcctgcgagggagacctggagatccaggagag
aaaggctcagcaggagagacaataacaaccacaggggacccaggactgaagggagagaag
ggtctgcaaggcaacccaggaccttcagggaatcctggtataaatggctatcctggcttc
cctggcaacttcggcgccaatggggatagaggtctgtctgtccagggccctcctggcaac
actgggcctaaaggtgagaagggccagccaggggttggtggtgcctcaggaattggtagt
atgggacgaccaggaccatccggagctcccgggatgccaggtcctaagggtgatttcaga
ccaggcctcccagggctgccaggtagaccaggccccccaggggaggatggttctctgggg
ctgactggagactctggtctgcctgggcttggtggatcgcctggcctaccaggaagagag
ggtccacagggagacagaggcagtgaaggtgctgagggcttgcctggtctgcctggggat
tctggggtgtgtataccaggcattccaggcccttcgggggctgtaggtctcaaaggaatc
atcggcttcacagggacaagaggacagaagggggtgcagggggattcaggtctgcctggc
agaggggccctgggattgatggggccgtttggacggcccgggtttgatggagccccggga
cctgggggggctgccggcctgaagggattcagaggaagagatagtgtacctgggatacca
ggccagagaggagacatggggccgtcaggaccatgtggtacaccaggaccagacggatac
ccaggaccagggggacgacctggccctaaagggctgatgggtgctgatggggtgaagggc
cgcgttggagccagtggacctgtgggagatgctggggctcctggagatattggagtctca
acatacattgaggtcccaggggaccctggggacaaaggacctacaggtctaagggcctta
acaggtgcaaaaggagatctaggagtgaaagggcccaatggagccagtggaaaggatggg
attcccgggagcgccgggccacaaggtcctgttggcgacccaggcagagatggccagaaa
ggatgtcctggtttccatggaaacactggagtcacaggagacatgggtgtgccaggtgta
aagggtgagaaaggggggacaggagctcttggagagcctggttcatcgggaacaccaggt
ccaaatggagtaaagggagtgaaaggagagcccagcctccctggaccaggagctaaagga
cgacgaggagaaaagggagagccagggtttccaggttttccaggagagaagggggagatg
ggtgtggtggggaggttcggagccccaggggccatcggccccacaggacccaagggaaga
gaaggactacagggatcacgaggacctccgggactagtcggggagaagggcattgatggt
ctcccaggcaacagtggctgtcatggcccgaatggcctgccagggagcccaggattggca
ggtgacccagggcctgcaggccccagaggtgcccagggtcgagacggcatccctggtcca
gcgggagagaaaggagacatgggagcccctggaattggaccaaaaggcacagatggaaag
acgggcctatctggacttaagggggatgtggggttacctggctgctttggcccccctggt
ccctcagggcctttgggggacattggacctccaggcccgcctggtcctacgggactgtct
ggaagtcctggtcgggatggaatgtgctttgaagggctaaaaggagaccgtggacaaaat
ggcgaccctggaccccaaggtatgcaggggccacggggccctcctggtccaccaggagcc
ggctttaaaggagacaaggggaacaaaggcgccatgggcatcctgggaacgcctgggtac
agaggagacacaggggtacagggcagaccgggtaatgatggcagaccaggtggtctggga
gccaaaggggagatgggacagttaggagacattggaccaaacggtcagaaaggagatgca
ggacctgcaggacctggaggttaccttggacagaaagggcagcctggagcacaagggccg
agggggagtgatgttcacgccaaggtgaaaatgacccctggagaacaggggctgccgggt
gacctgggggccagaggagagcctggacccacaggagcgcagggacgccacggatcacca
ggactcccaggtcccaaaggtgtcttgggcctagatgggccaattggacagcctggattg
cagggagccaaaggagaccgagggttccctggaccacaaggtatccaaggtgagcagggg
actccaggagccaaaggcccccggggctctccaggtccctactttgccgggccagtagag
gacggcttcctattcacacgtcacagccagaggaagaacgtgccccagtgcccagggggc
agcaacctcatctactccggatactccctcctcttcatcaacggcaacaacagaggtcat
ggccaggatctgggtacactggggagctgtctgcctcgtttctctaccatgcccttctta
ttctgcaacacggacagcacgtgccgctacgcctcccgcaacgactactcctactggctg
tccacggatgaggccatgccaagcgacatggccctcatctctggtgactcactggagagc
tatgttagcaggtgtgcagtgtgtgagaccaaagcaaacatcatcgctgttcacagtcag
accaaccagatccctgtttgtccacagggctggctctctctctgggctggctactctttt
gtcatgcaaacaggggctggagcggagggctctggccagcccctggcctctccgggctcc
tgcctagaagagttccggaagattcccttcattgagtgccatgggcgagggacatgcaac
tactacactgactcctacagctactggctggcctccctggaccccgaaaacatgttcagt
aaacctaagcctcagacagtgaagggagactgcccgggtagtatagtcagtcgctgtcag
gtttgtatgaagcaatggcagtga

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