Coregonus clupeaformis (lake whitefish): 121567280
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Entry
121567280 CDS
T08357
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04136
Autophagy - other
cclu04140
Autophagy - animal
cclu04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121567280
04136 Autophagy - other
121567280
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
121567280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121567280
03029 Mitochondrial biogenesis [BR:
cclu03029
]
121567280
Membrane trafficking [BR:
cclu04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
121567280
Others
Specific organelles associated proteins
Auto phagosome
121567280
Mitochondrial biogenesis [BR:
cclu03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
121567280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_NWD2_C
eIF2A
Beta-prop_IFT140_1st
WD40_RFWD3
ADIP
DUF4200
Beta-prop_SPT8
Uso1_p115_C
CENP-F_leu_zip
CCDC93_CC
Beta-prop_DCAF12
STX6_10_61_N
DUF7310
PRKG1_interact
NET2A
HEF_HK
CCDC22_CC
Lipoprotein_6
DUF1664
Motif
Other DBs
NCBI-GeneID:
121567280
NCBI-ProteinID:
XP_041733124
LinkDB
All DBs
Position
6:8597610..8639284
Genome browser
AA seq
621 aa
AA seq
DB search
MAERRVECSWKRHVAEQLKQRDRVQRQAFEEIIHQYNRLLEKSDLQAVLSERYQLDKYDF
QNRHDGSPGVDSSRSDTLQQEMAQMRIRHQEELTELHKKRGELAQSVIELNHQIQQKDKE
IQSNEAKMQEYQRQIAELEGECRDLRGQLQDLEQANQTLKDEYDALQITFGALEEKLRRT
TDDNQELVSRWMAEKSQEANKLNAENEKDCKRRQAKLQKELADAAKEPLPMDPDDDIEVL
AEDSGKGTGEDSPNRPLSRTPSKRISGQPPQSGLLDSISNIFGVSESVQSGLLPPDSRRR
PGNWHGTSPENTETPSGVCADVRVPSTALHVFEAHDGEVNAVRFSPGSRLLATGGMDRRV
KLWEVVSGRCEPKGALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTG
HSGKVLAARFLLDNARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGH
FDKKVRFWDIRAESIVCELELLGRVTSLDLNHDRTELLTCSRDDLVKIIDLRSNAVRQTF
SAQGFKCGADWTRVTFSPDGSYVAGGSADGALYVWNVLTGKLERTLDKNHCSAINSVSWS
PSGAYVVSVEKGSKAVLWSDM
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggcagagcgtcgtgtggagtgctcatggaagaggcacgtcgcagagcagctgaagcag
agggaccgtgtgcagcggcaggccttcgaggagatcatccaccaatataaccgtctcctg
gagaagtccgatctacaggctgttctttcagagagataccagttggacaaatatgacttt
cagaacagacatgatggcagcccgggggtggactcaagtcgcagcgacaccctacagcag
gagatggcccagatgcgaatcaggcaccaggaggagctgaccgagcttcataagaaacgg
ggcgagctggcccagagtgttattgagctcaaccaccagattcagcagaaggacaaggag
attcagagcaatgaagccaagatgcaggaataccagcggcagatcgccgagctggagggt
gagtgccgggacctgcgtggccagctacaggacctggagcaggccaaccagacgctgaag
gacgagtacgacgcccttcaaatcaccttcggtgctctggaggagaagctgcggcgcacc
accgatgacaaccaggagctggtgtctcgctggatggccgagaaatcccaagaggccaac
aaactcaatgcagaaaacgagaaagactgcaagcgcagacaagccaagcttcagaaagag
ctcgcagatgctgcgaaggagcccctgcccatggaccccgacgacgacatcgaggttcta
gctgaggattctgggaagggcactggagaggactctcccaaccggccgctcagccgcacc
ccaagtaaacgtatctccggacagcctcctcaaagcggcctgttggactcaatctccaac
atatttggcgtgtctgagtctgtgcagtctggactcctccctccagactccagacgtcgt
cctgggaactggcacggaacgtcacctgaaaacacagagaccccctccggagtgtgtgcc
gatgtccgtgttccctccacggccctccacgtatttgaagcccatgacggggaggtgaat
gcggtgcggttcagcccaggctcccgactcctggccaccggagggatggaccgcagggtc
aaactgtgggaggtggtctcaggtcgctgtgagccgaagggtgctctgactggcagcaac
gccgggatcaccagtatagagtttgacagtgctggctcctacttgttggctgcgtccaat
gactttgccagtagaatctggactgtggatgactacagactgaggcacacgctgacaggc
cacagtgggaaggtgctggcggctcgctttctcctggacaacgctcgcattgtctcaggg
agctacgacaggactctgaaactatgggacctgcgcagcaaagtctgcatgaagactgtg
tttgctggatccagctgtaatgacatagtctgcacagagcagtgtgtcatgagcggccat
tttgataagaaagtgcggttctgggacatcagagcggagagtatagtctgcgagctggag
cttctgggccgagtcacatctcttgacctgaaccacgaccgcaccgaactgctcacctgc
tcccgggacgacctggttaagatcatcgacctgcgcagcaacgcggtccgccagaccttc
agtgctcagggcttcaagtgtggcgctgactggacccgagtcaccttcagtcccgatggc
agttacgtggcggggggctctgcagacggagctctgtatgtgtggaatgtcctgacgggc
aagttggagcgcaccctggacaagaaccactgctcggccatcaactcggtgtcctggtcg
ccgtcgggagcctacgtggtcagtgtggagaagggcagcaaggccgtgctctggtccgac
atgtga
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integrated database retrieval system
