Coregonus clupeaformis (lake whitefish): 121567292
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Entry
121567292 CDS
T08357
Symbol
brca2
Name
(RefSeq) LOW QUALITY PROTEIN: breast cancer type 2 susceptibility protein
KO
K08775
breast cancer 2 susceptibility protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03440
Homologous recombination
cclu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121567292 (brca2)
03460 Fanconi anemia pathway
121567292 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121567292 (brca2)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121567292 (brca2)
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121567292 (brca2)
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
121567292 (brca2)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
121567292 (brca2)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
121567292 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
121567292 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA2
BRCA-2_OB3
BRCA-2_OB1
BRCA2DBD_OB2
BRCA2_TR2
Tower
Motif
Other DBs
NCBI-GeneID:
121567292
NCBI-ProteinID:
XP_041733150
LinkDB
All DBs
Position
6:complement(9926545..9961001)
Genome browser
AA seq
2822 aa
AA seq
DB search
MYTRRNMFDAFKDQIWEELGPLNPNWFEELTAKASSGDRGDTEKEDPSTAISCGQDGSFK
SPLEKCPLDSDMFSTPTIFRQRRPQSAETLTEDIFFPDQGSSGTEITDTSPCLFGKSIDS
ETPSKSCRTRLHGDSFGLLDTPQHSAAHSSKRISESLGAQLDPNMSWTSSLNTPVMSPTI
ILTKSEEHRPMYPVRLSTEEQVMFVRKLFPSVSKESGSTVLSPEQNDRPLCQHNGLDCHL
PGVIEISPGSQDTLPVDSGSHWMQTLPDAIEGGEIRSTMASVLDGAEDVLSIFFSNSSLA
LRRVKTKERIKRKQSNSTKEHVPTSTMEHDKVSSDRAGEYQHTRATSEPLESRTDMKSGD
LGISQWTPINVPDISDYDMDSFHHEGSSSTKHIIPQDDISEMFCDFTGSQQPDRGSSKQT
VQVESALSRRTVPGSVVESSLEHTFPRKTRTFVYCVQNPLPSVQGKDNVTWMLPASSGTA
PRGENPNVKQTNEDEFNNLNKTALDGKKPLVQQESATEENIVSRAPTKDPDLDMSQLCRA
FAQDFSQVVDSSKPCAKEQTLKNGFSASACLSAMRLRNRKLLTQLEWGQKPEHLNSGISD
EMHIPGSQFSNSASTSRMESGLPPSTLSNVTQTESSNVHPSSEKSSGNQSSREFKTGNNW
IISLPPEAIKKAKASLDDLIEENMTDVVTAASEVKPVLSCVTGSRLSTEIKFISPLNVAK
RSKQTSVKLNGQVVQTPHSVNVSVSSLPGSGFKMASNKKITNYSANLEKAKDLFKEIEDE
IPAVNIPEISLPEEGNMSCGLELVDGSHLQPLPYTHQRSVESQGLLTDSQRADVSELCSL
LEAADSQFEFTQFKPAKWNCYVPDGSPPRQSSEKELDPEFLTGIDFDDSFNSDVEKQSVM
MATPDKKTTIPHCKKICQVTTTKIKSSGASPSSSTEKPKERVLHRRVLYIPSYSSENIAE
SSFGLLTKTTNKNHLLDMETNISGMESESKNLPKLDVGFKTAGGNAMRVSEKCLSKARAL
FADLEENREMNTPKCVVENTEQVETSPVQYRGEVDTNVDSNVTHFHGPDNKVDLKEPRDE
YIDKIKVDFTHSHKHGDGGFQTDGGKGVTMSAKALQKTNAVFKDCDVMESSGCASEKLNK
TSVVSETGSNNCERNNCGFSTARGKRVDVSAKSLLKARTLLNDCDELDNSKPGKIPSLNA
KIPSQNIQEESDFDFKKPSSKAASISAKIPLTAKTQSDGGGNSHDVLWAKGKMLEPENSQ
THAKDPLRNGCGFSTASGKRVSVSEGALLKAQALLSECNVDGEELSISKNKIRVDLHTIQ
NPPHKHGGFKTAIVKEVTVSTKALKQAKAVFNNCDSNMDSLISAEAKQGNIDVKSTDGLM
NNPGKSYCAFMTAGGKKVHVSEKGILKAKSILNENLDNCTDSNAIEEAWFSDGRFPLLTE
DGTGVKEGARNKSNSSDLNGEEDSCGFSTASGKTVHMSDGALQKAKSNLNECDVIENPQP
ENSHKVDLENILTKETHEISHGSTASGKGVSISENALQDVKSVYVLGETGNVKYSVGSNQ
IGSHCGFSTASGKGVSVSEKALQVACDKFKACDDTLASDTDPHKRSEEKRPLKVPTPHIH
DHRMPVKAVGLEDREAIQTIVGMACQSSSAACQAESSLLNFESLGFSGCSVTQKRYFAQE
AMDCTKALLEDEDLTDQSPGTPIQAKGGFEMRSGIGKRLAEDLGMTDQPPLKRRLLAEFD
RTVDCNRRSTLTPAKSSSDGIFKDRRVFQYNVALQPNVTRPYRAKQSCVNTRLNKTEPQK
TTSDPTAEDRKPVGSKTAVFVPPFRKNVKLEPQKSSGPQDKTRAPGVFVPPFRKYNCVTS
KGSFKPSEENHSLLLFKTSTSVPLPEYNHIPITDTGSDNAKESIQELGPKDIDKTDPCDD
SGHSLPVTTGGVDATAEEYTAGQLGPNSMGTLLAVVYDTECLQLARDMQDMRIRKKKRQT
IRPLPGSLYLAKTSGVARLTLREAVGGWHPVQHTHNQLYGYGVHRHVSEISSESAEAFRF
VCRHFFRPEAFVEGRVQLADGGWLIPHNDGTAGKQEFHRALCDSPGVDPKLITEDWVFNH
YRWVVWKRACMERAFPEVMGSLCLTPEQVLLQLKYRYDLEVDHSRRSALRKIMERDDSSV
KTMVLCVCGVVTKGHNPTRQTWSETKTKTPGSATGSKAEPSPVGLIWLTDGWYAIKAQLD
VPLTTMLHRGRLAIGGKVLVHGAKLVGSQDACSPLEAPDSLMLKIGANGTRAARWDTRLG
FYRDPRPFLLPLSSLYSNGGPVGCVDIVVLRSYPTQWMAKKPDGGFVFRSGRAEEREARR
HGDTKHRAMEILFAKIQAQFEKEEDAVCGKTRGRRRTLRGGDIETLLDGEELYDAVENDP
VYLEGRLSEQQWEALNNYRRCVGERRQAALQERFRQALEGAQEGEGGSCPNRDVTPIWKL
CVADSRAKLGSNVYLLNIWRPSMDLQSLLKEGCRYKAYQLSTSEGKKRAGNTSIQLTATK
KTQFQNLQASAGWLCERFQAREAVGFRVLLNLDFQPLCGEVDLVGYVISITDRQGHSPVV
YLVDGRLDFVKVRCCSSLVQQGLEELVKPLALVALSNLQLRAQRSSSPIRSAIPGLYAGD
LAVFSTNPKEPHLQEAAAELRTLVQGQEHFFRTAEERLSNLVQGSVPCPAPPPRTPGSKA
DAKPDARTTMTPQQSVQSVGPFTPLNKDKDPKSLKRKRGLDYLCRIPSPPPLCPLGTMTL
PSPCINKTFNPPRRAETHRILKTHLAPAPRHVHPPLEDEWVEDEELVMIDTQALHDGIGI
DT
NT seq
8469 nt
NT seq
+upstream
nt +downstream
nt
atgtacacaaggagaaacatgtttgacgctttcaaggatcaaatatgggaagagttggga
cctctgaacccaaactggtttgaggaactcactgctaaagcttccagtggggatcggggt
gatacagagaaagaggatcccagcactgcaatatcttgtggacaagatggcagtttcaaa
tcaccgttggaaaaatgtcccctggatagtgatatgttctctaccccgacgatcttcagg
cagagaagaccacagtctgctgagacattgacagaagacatttttttccctgatcaagga
agctctggaacagaaataacagacacaagcccatgcttatttggaaaatcaatagacagc
gagacccccagtaaatcctgtagaacaaggctgcatggagacagttttgggctgcttgac
acaccacaacactctgcggcacactcttccaaacgtatatctgaaagtcttggtgcacag
ttagaccctaatatgtcctggaccagttctctcaacacacctgtcatgtcgcccaccatc
attttgactaaaagtgaggagcataggcctatgtacccagtaagactttctactgaagag
caggttatgtttgtgcgaaagcttttcccctcggtctccaaggagtctggaagcacagtg
ctgtcaccagaacagaacgatagacctctctgtcaacataatggactggattgccacttg
cctggtgtgattgaaatctcccctggctctcaagacacgttacctgttgacagtggcagc
cattggatgcagactttaccagatgctattgagggcggagaaatccgcagcacaatggcc
agtgttctagatggagctgaggatgtcctctccatattcttcagcaacagcagtttggct
ttacgaagggtgaagaccaaggagagaatcaaaaggaagcaaagcaactcaactaaggaa
cacgtacctacttctacaatggaacatgacaaagtatccagtgacagagcaggagaatac
caacacaccagggcaacctctgagccccttgagtccaggactgacatgaagtctggggat
ttggggatttctcagtggactccaataaatgtacctgacatttcagactatgatatggat
tcatttcaccatgaggggtcttcctctactaaacacataattccacaagatgatataagt
gaaatgttctgtgacttcactggaagccagcagccggatcgtggttcctctaagcagact
gtccaggtggagtctgccctttccagaagaacagtaccagggtctgtagtcgaaagctct
ctagaacacaccttccccaggaaaacaaggacatttgtttactgtgtccaaaatccactt
ccgtcagtgcaaggaaaagataatgttacttggatgttacctgcatcatctggaactgct
cccagaggtgaaaatccaaatgtaaaacaaaccaatgaagatgagtttaataatcttaac
aaaactgccttggatgggaaaaagccgctagttcagcaggaaagtgcaactgaagaaaat
attgtttcacgagcaccaaccaaagaccctgatcttgatatgtcacagctttgcagggca
tttgcacaagattttagccaagtagttgactctagtaaaccatgcgcaaaagaacagact
cttaaaaatggcttctctgcatcagcttgtctctcagcaatgagactaaggaacagaaaa
ttgttaactcaactagaatggggccaaaaacctgaacatcttaactctggcatcagtgat
gaaatgcatattcctggttctcagtttagcaactctgcaagcacgtctagaatggagagt
ggcttacccccctccaccctttctaatgtcacacaaacagaatcatccaacgttcaccct
agctctgaaaaaagttctggaaatcaatcatctagagagtttaaaactggtaacaactgg
attatctctttgcctccagaagcaataaagaaagcaaaagcatcattagatgacttaatt
gaggaaaatatgactgatgtcgttactgctgccagtgaagtgaaaccggtgttgtcatgt
gtaacagggagccgactgtccacagaaattaagttcatcagtccactcaacgttgccaaa
aggtcaaagcaaaccagcgtaaaattgaatggtcaagttgttcagacccctcacagcgtc
aatgtctctgtttcctcactccctgggtctggtttcaaaatggcctccaataagaagata
acaaattattcagcaaatctggagaaagccaaggatttgttcaaggagattgaggatgaa
atacctgcagtcaatattcctgagataagccttcctgaggaaggtaacatgtcatgtgga
ttggagcttgttgatggatctcatttacaacctctaccctatacacaccagaggtctgtt
gagagccaaggtctgttgacagactcacagagagctgatgtttcagaattgtgcagtctc
ttggaagctgcagacagccaatttgagttcacacagtttaaaccagcaaagtggaactgc
tatgttccagatgggagcccccctcgtcaatcatctgagaaagagttggatcctgaattt
ctcacaggcatagatttcgatgacagttttaactctgatgttgagaagcaatccgtgatg
atggccacccctgacaaaaagacaactattcctcattgcaagaaaatttgccaagtaaca
accaccaaaattaaatctagtggggcatcacccagcagttcaacagagaaacccaaagaa
cgtgttctccacagaagagtactttacattcccagttatagctctgaaaacatagctgag
agttcctttggtttgttgacaaaaaccacaaacaagaaccatctgcttgatatggaaacg
aacatcagtggaatggagtctgaaagcaaaaatctccccaagttggatgtgggttttaaa
actgctggaggaaatgctatgagagtttcagagaagtgtctgagcaaagcaagggccttg
tttgcagatttggaggaaaatcgtgagatgaacacacccaaatgtgtagtagaaaatacg
gaacaagttgaaacctcacctgttcaatatagaggcgaagttgatacaaatgttgattca
aatgtgacacattttcatggccctgacaataaagtagacctgaaagaaccacgtgatgaa
tacattgacaagattaaagtggactttacacattctcacaaacatggggatggtggtttc
cagacagacggtggtaaaggagtgaccatgtcggcaaaggcccttcaaaaaacaaatgca
gtcttcaaagattgtgacgttatggaaagttcaggttgtgcatcagaaaagctgaacaaa
acaagtgttgtatcagagactggcagtaataattgtgagagaaacaattgtggcttcagc
actgctcgggggaagagagttgatgtttctgcaaaatctctactgaaggcaaggactctc
cttaatgactgtgatgaattggacaattctaagccagggaaaatccccagcttgaatgca
aagataccaagtcagaatattcaggaggaaagtgactttgattttaagaaacccagtagt
aaagcagcctccatatcagcaaagatccctttgacagcaaaaactcagtctgatggaggt
ggcaattcacatgatgttctatgggcaaagggcaaaatgcttgaacctgaaaattctcaa
acccatgctaaagatcctttgagaaatggatgtggttttagcactgccagtggtaagaga
gtgtctgtgtccgaaggggcactgttgaaagcacaggctcttttgagtgaatgtaatgtg
gatggagaggaactttctatatcaaagaacaagatccgagtagatcttcataccattcag
aatccaccacataagcacggtggatttaagactgcgattgtcaaagaagtaaccgtttca
actaaggcccttaagcaagcaaaggctgttttcaacaactgtgattccaatatggacagc
ttaatcagtgccgaagcaaagcaagggaatatagacgtaaagtctactgatggtctgatg
aacaatccagggaaaagctattgtgccttcatgacagctggtggaaagaaagtgcatgtc
tctgaaaaaggtattttgaaggcaaagagcattctgaatgaaaaccttgataactgcaca
gactcaaatgccattgaggaggcttggttttcagatggtagatttccattactcactgaa
gatggtacaggtgtcaaagaaggagcaaggaacaaatcgaattcttctgacctcaacggt
gaagaagatagctgtggtttcagcactgccagtggcaagactgtgcatatgtccgatggg
gcactccagaaagcaaagtctaatctgaacgaatgtgatgtaattgaaaatccacaacct
gagaatagccacaaagtggatctggaaaatattctaacaaaggaaacgcatgaaatctct
catggtagcacagccagcgggaaaggggtgtctatttcagaaaatgctcttcaagatgtg
aagtctgtgtacgttctgggtgagactggtaatgtaaaatattcagttggcagtaatcaa
ataggaagccattgtggttttagcacagccagtggtaaaggagtgtctgtttcagagaag
gcacttcaagtagcatgtgacaaattcaaagcgtgtgatgatacccttgccagtgatact
gaccctcacaaaagatctgaagaaaaaaggccactgaaggtccctactccccatattcat
gatcaccgtatgccggtcaaagcagtgggactggaggaccgcgaagctatccagaccatt
gtcggaatggcatgtcagtcttcatctgcagcatgtcaagcggagtcttccttgttaaat
tttgaatccctggggttcagtggctgctctgtgacccagaagaggtactttgcccaggag
gccatggattgtaccaaggctcttttagaggatgaagacttgaccgatcagagtcctgga
actccaatccaagctaaggggggttttgagatgagaagtggaatcgggaaaaggttggca
gaggatttagggatgacagaccaacctcctctgaaaagaagactcttggccgaattcgac
agaactgtggattgtaatagacggtcaacactcactccagctaaaagcagttcagatggt
atatttaaagacaggagagtcttccaatataatgtggctcttcaacctaatgtcaccagg
ccgtatcgcgctaagcagagttgtgtgaacacaaggctgaataagaccgagccacagaag
acaacatcagatccaaccgccgaagaccgtaaaccagttggctccaagacagctgtattc
gtccccccattccggaagaatgtcaagcttgagccacagaagagcagtgggcctcaggac
aagactagagcgcctggtgtgttcgttcccccgtttagaaaatacaactgtgtaaccagt
aagggttcctttaagccttcagaagagaatcattctcttcttctcttcaagaccagcaca
tctgttccacttcctgagtacaaccacatccccatcactgacactggtagtgataacgca
aaggagtccattcaggaactgggcccaaaagatattgacaaaacagacccatgcgatgat
agtggacatagccttcctgtcaccacaggaggagtggatgccactgcagaggagtatacc
gcaggtcagctaggccctaacagcatgggcacccttctagctgttgtttatgatacagag
tgcctgcagctggcccgagacatgcaggacatgaggatcaggaagaagaagcggcagacc
attagacctctccctggcagcctgtacctcgccaagacatctggggtggccaggctgacc
ctcagggaggccgttggaggttggcaccctgtacaacacacacacaatcagctgtatggc
tacggagtgcaccggcatgtttcggagatcagcagtgagagtgccgaggcgttccgcttt
gtctgccgacacttcttcagacccgaggcgtttgtagaggggcgcgttcagctggccgac
gggggctggctcatacctcacaacgatggaactgcagggaaacaggagttccacagagcg
ttgtgtgacagccctggtgttgaccccaagctgatcactgaggactgggtgttcaaccac
taccgctgggtggtgtggaaacgggcctgcatggagagggcattcccagaagtgatgggc
agcctctgtctcacaccggaacaggtgctcctacaactgaaatacaggtacgacttggag
gtggaccacagcaggaggtcagctctgaggaagatcatggagagagacgactcttcagtc
aagaccatggtgctctgtgtgtgtggtgttgtcaccaaaggccataacccaacaaggcag
acctggagtgagaccaagaccaaaacacccgggagcgccacagggtctaaagcggagccg
tcccctgtaggtttgatctggctgacggacggctggtacgcaatcaaggcccagctggac
gtcccactgaccaccatgctccaccggggccgcctggcgattggggggaaggtgctggtc
cacggggccaagctggtgggatctcaggacgcctgctccccactagaggctcccgactcc
ctcatgctgaagattggggccaacggcaccagagcagcgcgttgggacaccaggctaggg
ttctaccgcgaccctagaccgttcctcctcccgctctcctccctctacagcaacggaggc
cccgtgggctgtgtggacattgtggtgctgaggagctaccctacccagtggatggcgaag
aagccggacggagggtttgtgttccgctcgggccgtgccgaggagagggaggcgcggcgg
catggcgacaccaaacaccgagccatggagatcctgttcgccaagatccaggcccagttt
gagaaggaggaggacgcagtttgtggtaaaaccagaggccgaaggcggaccctgcgtggt
ggagacattgagacactgctggacggggaggagctgtacgacgcggtggagaatgaccca
gtttatctggagggccgtctgagtgagcagcaatgggaggcgttgaacaactacaggcgt
tgtgttggtgagaggaggcaggccgcgctgcaggagcggttccgccaggctctggagggt
gcccaggagggcgagggcgggagctgtcccaacagagacgtgacacccatctggaagctc
tgcgtcgctgactccagggccaagctgggcagcaatgtgtacctgttgaatatctggcgc
ccctccatggatctgcagtccttgctgaaggagggctgtcgatacaaggcctaccaactc
tccacgtcggagggcaagaaacgagccggtaacacctccattcagctcacagccaccaag
aaaacccagttccagaatttacaggcttctgcagggtggttgtgtgagcgtttccaagcc
cgagaggcggtcggctttcgcgttctcctgaacctggactttcagccactctgtggagag
gtggatctggtgggctacgtcatctccatcacagacagacaaggtcattctccagtggtg
tatctagtggatggccggctggactttgtcaaggtgcgctgctgcagcagtctggtccag
cagggcttggaggagctggtcaagcctctggctctggtggccctcagtaaccttcagctc
agagcccagcgctcctcctcccccatccgaagcgccatccctggcctatacgctggagat
ctggccgtgttttccaccaaccctaaggagccacatctacaggaggctgccgctgaactc
aggacccttgtccagggccaggaacacttcttcaggactgcagaggagaggttatctaac
ttagtccagggctctgtcccgtgtcctgctccgccgccaaggactccaggctcgaaagca
gatgccaaaccagatgcaaggactactatgacaccccagcagtctgtacaaagcgttggc
cccttcaccccgctgaacaaggacaaagaccccaagagcctaaaaaggaagaggggccta
gactacctgtgtcgcatcccctctccccctccactctgccccctgggcaccatgacctta
ccctcgccgtgcatcaacaagaccttcaacccccctcgcagggccgagacccaccggatc
ctaaagacacatctggcccccgctcctcggcatgtccacccgcccctggaggatgagtgg
gtggaggatgaagagctggtcatgattgacactcaggccctacacgatggcatagggata
gacacgtga
DBGET
integrated database retrieval system
