Coregonus clupeaformis (lake whitefish): 121567320
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Entry
121567320 CDS
T08357
Symbol
rnf169
Name
(RefSeq) E3 ubiquitin-protein ligase RNF169
KO
K20805
E3 ubiquitin-protein ligase RNF169 [EC:
2.3.2.31
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121567320 (rnf169)
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121567320 (rnf169)
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
121567320 (rnf169)
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
121567320 (rnf169)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
Other DSBR factors
Ubiquitin ligases
121567320 (rnf169)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
Prok-RING_4
zf-RING_2
zf-RING_UBOX
zf-RING_10
zf-RING_4
LAG1-DNAbind
Motif
Other DBs
NCBI-GeneID:
121567320
NCBI-ProteinID:
XP_041733203
LinkDB
All DBs
Position
6:3818491..3829053
Genome browser
AA seq
669 aa
AA seq
DB search
MKMAATGSARSTSRLGQKCKARPADMLKTRTHSQLLTLDEARCPVCSEILLEPVTMPCSH
SVCLHCFKRTVEFTSLCCPLCRLRVSSWARKQSREKSLVNIELWEIVRKSYPQRCKRRME
QRDCETGGEEIFRSPAQVSKSGEIRLEYGKQQVKVPMNEENDEGRRKVLHHRKEECGTLK
HFQDPFYGLLSDSENEEPIGKRTRNVSAFVRRTKISADFTRDGLQTNVVQRSQSCTDTEE
GRQKIRVATHLPGLDKASIAHSYSAGILLSSENSRSLSAPIIVQDKRRSWRGVIMAPSTP
FMVPQLKQERSISPESNDSISEELNHFKPIVCSPCTPPKRLPDGRVMEPTIVKSTPRNLF
RSLQRPTSYEASPTILQKWKQIEVDRQSVKVTSKGTLTSPMNSPMFEDLVFKPSPIEEKD
SKPCSCTLAANKGKEHLGRCAKTACSEQENERTCIHNKQRLIFDQAIGETALHQKQFTKF
HTPFVPLTSEETVTECGVSSESMVVPESHCGPTSIHQNPTLVPHNINASVRGCKLKSKDS
QDQRKELGNRNCAQNQPTSRRGKKRSQKTKHLEETESGLKRPRSQSQYGFNIECAQADLY
IQQVQQEREDRELALNLQRQFDREQQQVDKQKTSLDKYFLRSCNENRIECNPRRSGRISK
RNEHFNCNY
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatggcggcgacagggtccgcaagatccactagtcgattggggcaaaaatgcaaa
gccaggcccgccgatatgctgaaaactcggacacattcacagctgctgactctggacgag
gcaaggtgtccggtttgttcggagattttattggagcccgtaactatgccatgtagccac
tcggtgtgtctgcactgtttcaagcggacagtggaatttaccagtttgtgctgtcccctc
tgccggctgcgagtatccagttgggcccgtaaacagtcccgggagaaaagcctagtaaac
atcgaactttgggaaattgttcgaaagagttatccacaacgatgcaagaggagaatggag
cagagagactgtgagactggtggagaagagattttccgctcgcctgctcaggtatccaaa
tctggagagatccgactggagtatggaaagcaacaagtaaaggtaccaatgaatgaagag
aacgatgaggggaggaggaaagtcctccaccacagaaaagaggaatgtggaacactcaag
cactttcaagatcctttctatgggttgctgtcagactctgagaatgaagaacccattggg
aagagaaccagaaatgtgtctgcgtttgttagaagaacaaagatctcggcagacttcaca
agagatggtctacagaccaatgtggtgcagagaagccagagctgtactgatacagaggag
ggaaggcaaaaaataagggtggctactcatcttcctggactggacaaggcaagtattgct
cacagctacagtgcaggaatccttctgtcctctgagaacagccgatctctttcggcaccc
atcattgtccaagacaagaggcgtagctggcgaggtgtcatcatggctccatcaacacct
tttatggtcccccagttgaaacaggagaggtccattagcccagagagcaatgacagtatc
tctgaggagctgaatcacttcaagccaatagtgtgctcgccgtgcaccccaccaaagcga
ctacctgacgggcgagtgatggaacccacaattgtgaagtccaccccccggaacttattc
cgcagcctgcagaggcccaccagctatgaagccagccctactatcctccagaaatggaag
cagatagaggtggatcgtcagtctgtcaaagtgacctcgaagggcaccttgaccagcccc
atgaacagccccatgttcgaggaccttgttttcaaaccaagccccatagaggagaaggac
agcaagccctgtagctgcactctagcagcaaataagggaaaagaacacttgggtaggtgt
gccaagactgcttgctctgagcaagaaaatgaaagaacttgtatacataataaacaaaga
ctgatatttgaccaggccattggagagacagccctccatcaaaaacaattcacaaagttt
catactccatttgtacctttaactagtgaggagactgtaacagaatgtggggtttcttct
gagtctatggtggtacctgaatcacattgtggaccaacctcaattcatcaaaatccaacc
ttagtcccacacaatataaatgccagtgttaggggttgcaaacttaaatcaaaggactca
caggatcagagaaaagaattgggcaatagaaactgtgcccagaaccaacctacctcaagg
aggggcaagaagaggagccagaagaccaaacacctagaggagacagagtctggactcaag
agaccaagatcccagagccaatatggttttaatatagagtgtgcacaggctgacctgtac
attcaacaggtacagcaagagagagaggacagagagctagcgttgaatcttcaaagacag
tttgacagggaacagcaacaagtagacaagcaaaagaccagtcttgacaagtactttctc
cgatcctgcaatgaaaacagaattgaatgcaatccacgcagatcaggaagaatttccaaa
aggaatgagcactttaattgcaattattaa
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