Coregonus clupeaformis (lake whitefish): 121567352
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Entry
121567352 CDS
T08357
Symbol
arhgef12a
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04270
Vascular smooth muscle contraction
cclu04625
C-type lectin receptor signaling pathway
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
121567352 (arhgef12a)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
121567352 (arhgef12a)
09153 Circulatory system
04270 Vascular smooth muscle contraction
121567352 (arhgef12a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121567352 (arhgef12a)
Membrane trafficking [BR:
cclu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
121567352 (arhgef12a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
PH
Motif
Other DBs
NCBI-GeneID:
121567352
NCBI-ProteinID:
XP_041733272
LinkDB
All DBs
Position
6:complement(1990655..2063908)
Genome browser
AA seq
1466 aa
AA seq
DB search
MSDTQSSITDRFPNKANGSSSILSKDHPPDKKPKRDKPAVSASHEFDPTDVLVQKSDCVL
AEGKPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAERAGVQTGDRIIKVN
GTLVTHSNHVEVVQLIKSGSYVALTVLGRPPGLPQIPLLEGEAKLGFLGAQTGSPTVTSP
NSPGQPMGERPYSPHDRITSPLPIWEENNSVHNQKVDILQKMLSKEQHDLQTMKEEYSRN
PTPKLLKDIQEAKKHIPQLQGQLSNAAGGAQDALHLGDGDDGSMVDMDHTPSSRGDSSND
LSWSSSTMSPVPRGFAPASPESLCQRVLLSYHSPKSTPRDSFNSCHSPDLEDTPDLDSLS
PSTVSSPSSRIVSQIIGAEDDYFDSDQEQVNGQCSSFQSMELLKSRPAHLAAFLHHVVSQ
FDPAPLLCYLYADLCKQTNSKETRRVFMDFHNFFIDRGAHLKVAVPESISSDLDRRRTEL
IPEELNRQYIQMVQDTLLPDIQRNLEDFRQKRSMGLTLAEGELARLDTERVRDRVALERE
RSCAENIITKIEDVLLTTQSTEEEKCTTMQYVILTYMKHLGVKVKEPRGLESKWVRINFL
PKIKKSVKTEKEGGEEKVKRTRFPSILGPPRRPSRVDPTSVGKAMDLNKPRPQKQLSQPC
LGALEHLEAGRLRASQSSEGSELTHSSSTNATSPPNSTPNSHTSDGVIRDSVFVGTPNSA
FPKLSEGLGDLDSLQYTPNTHFDYSLDQLQEEDRESGILEGTPKAIRRLDGLGSTEVQSE
DDQGGTDSEHDPLNWQQLVGREVLAGLRPHEIKRQEVINELFYTERAHLRMLKVLDNIFY
QKLTREAILPPADVKNIFTNLEDIVQLHVSISEQMATIRKRNETSVIDQIGDDLLSWFSG
GEEEKIKQAVGTFCSNQPFALELIKSRQKKDSRFTSFMQEAESNRLCRRLQLKDIIPVEM
QRLTKYPLLLENIAKYTDDTVEKDKVKKAGDCCRNILNHVNQAVKESENKQRLEDYQRRL
DLSSLKQTENPVISELKNLDLTKKKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQD
ERLILKCHSKNLSGTADTKHIFSPIIKLNAVLVRSVATDNKSFFVLSMSDNGAQIYELMA
QTVSEQRMWQRQITQRADAMKVKPNIPLPQTDGARDGMEIITAGVARLSKEPDCISSGSS
QSIDKDCSSASGGVMQTSLPDANPFEGLKPEEEEPSREEGLYRDPDLADRLPFRMAVDGL
SESDRLGFSPSRADDALKTLSALKQVLVTQLMSQEDGEGAGRSSSGGGRLLRTTSLRTPV
DSRARVEVQNGSGRCTQASHPEDQAQDLVSGDTGFFESPEDYAGYLVLEGYGGSGESSTD
DDLQATGKQLSASRGCGAGDSGISLRFSSASQAGSISSFSRQVLSHIRNLQTNLNHLKEV
EAKYHSLLRQRPARSSTDVDDNKDKR
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacacagtccagtatcactgataggtttcccaataaagcaaacggaagcagt
agcattctcagtaaagaccacccccctgacaagaaacccaaaagagataaaccggcagtc
tccgcttcacatgagtttgaccctacagacgttctggtgcagaagagtgactgtgttcta
gcggaggggaagcctgagtcctgtgggcttgtccagcgatgtgtgatcattcagaaagat
gagaatggctttgggctgacggtgagcggagacaatcctgtgtttgtgcagctcgtcaag
gaagatggcgctgcagagcgtgcgggtgtacagacaggtgacaggatcatcaaggtgaac
gggaccctagtaacacattcaaaccacgtggaagtagtacagctcataaaatcgggctcc
tatgtggccctcacagtgttggggcgaccccctgggttgccccagatccccctgttggag
ggcgaggctaagctggggttcctaggggcccagacagggtcgcccactgtcacctctcca
aactccccaggacagccaatgggggagcgcccatacagcccccatgaccgcatcacctct
cctctaccgatatgggaagagaacaacagcgtacacaaccaaaaggtagacatcctgcag
aagatgctgtccaaggagcaacacgatttgcagacaatgaaggaggagtacagcaggaat
ccaacgcccaaactactgaaggacatccaggaagccaagaagcacattccacagctgcag
gggcagctcagtaatgccgctgggggagcacaggatgccctgcatttgggcgatggagat
gacggtagcatggtggacatggaccacacaccttcctccaggggggacagtagcaacgac
ctctcatggagcagcagtaccatgtcccctgttccccgtggttttgcacctgcctccccg
gagagcctgtgccaaagagtcttgttgtcctaccacagcccaaagagcacgccccgagac
agcttcaactcctgccactcccccgacctagaagacactccagacctggactctctgtcc
ccctccactgttagcagcccctcctcacgcatcgtctcccagatcataggagctgaggac
gactactttgactctgatcaggaacaggtcaatggccagtgcagcagtttccagagcatg
gagctgctcaagtccagacctgcccacctggcagcgttcctgcatcacgtcgtctcccag
tttgaccctgcaccgctgctctgctacctctacgctgacctgtgcaagcagaccaactcc
aaagaaaccagacgggtgttcatggacttccacaacttcttcatcgaccggggagctcat
ttaaaagtagctgttcccgagtccatatcctctgaccttgaccggaggaggacggagctg
atccctgaggagctgaacagacagtacatccagatggtgcaggacaccctgctccctgac
atccagaggaacctggaggacttcaggcagaagcgcagtatgggcctaaccctggcagaa
ggggaactggcccggctggatacggagcgtgtcagagaccgggtagcactggagagagaa
cgctcttgtgctgaaaacatcatcaccaagatagaggatgtcctgttgacaactcaatcc
acagaggaggagaaatgcactacaatgcagtatgtcatcctcacgtacatgaagcacctt
ggcgtgaaagtcaaagagccacgcggcctagagtccaaatgggtccgcatcaacttcctc
cccaagatcaagaagagcgtcaagaccgagaaggagggaggggaggagaaggtgaaacga
accaggtttcccagcatcctcgggcctccgcgccggcccagccgcgttgacccaacgtca
gtcggcaaggccatggacctcaacaagccgcggccccagaagcagctgtcccagccctgc
ctgggggccctggagcacctggaggcgggtcgcctgagggccagtcagtccagcgagggc
tctgagctcacacattcctcctcgaccaacgccacctcgccacccaacagcacccccaac
agccacacctctgacggagttatcagagactctgtgtttgttgggacccctaactctgcc
ttccccaaactgagtgagggtctcggagacctggacagtctacagtacactccaaacaca
cactttgactacagcctggaccagctacaggaggaggaccgggagagcggaattcttgaa
ggtacacccaaggctatcagaaggttggatggccttggctctacagaggtgcagagtgaa
gacgaccaaggaggaacggactctgagcacgaccccctcaactggcagcagctggtggga
cgagaggtgctggccggactcaggccccacgagatcaagagacaggaagtcattaacgag
ctgttctacactgagagggcccacctgcggatgctcaaagtgctggacaacatcttctac
cagaagctcaccagagaggccatactgcctcctgccgacgtcaagaacatcttcaccaac
ctggaggacattgttcaactgcatgtttcgatatctgagcaaatggcaacaattcggaaa
aggaatgagacatccgtaatcgaccaaataggagatgacttgctgtcctggttcagcggg
ggagaggaggagaagatcaagcaggcggtgggcacattctgcagcaaccagccctttgct
ctggagctcatcaagagcaggcagaagaaggactcgcgcttcacctccttcatgcaggag
gctgagagtaaccgactgtgtcgaagactccaactgaaggacatcattcctgtggagatg
cagaggctcaccaagtaccctctcctactggagaacattgccaagtacacagatgacacc
gtggagaaagacaaggtaaagaaggcgggcgactgctgcaggaatatcctcaaccacgtc
aaccaagcggtgaaggagtctgaaaacaaacagagactggaggactaccagaggaggcta
gacctctcgtctctgaagcagacagagaaccccgtgatttcagagctcaagaacctggac
ctgaccaagaagaagatggtccacgagggaccactgtcatggaaggtcaacaaggacaag
actattgagctgtacaccctgctcctggaggacatcctggtactgctgcagaagcaggac
gagcgcctcatcctcaagtgccacagcaaaaacctgtcgggcaccgccgacaccaagcac
atcttcagccccatcatcaagctcaacgcggtgctggtgcgctctgtggccacagacaac
aagtcattctttgttctctcaatgtcggacaacggggcccaaatctacgagctgatggcc
cagaccgtatcagagcagagaatgtggcagcggcagatcacccagagagcggacgccatg
aaagtgaagccaaacatccccttacctcaaacagatggagcgcgagacggtatggagatc
atcactgcaggcgtcgcccgactcagtaaggaaccggactgcatctcctctggaagcagc
cagtctatagataaagactgcagctctgcctctggaggcgtgatgcagacctctctccca
gatgctaacccctttgaaggactcaagcccgaagaggaggagcccagccgggaggagggg
ctttacagggacccggacctcgcagataggctccccttccgcatggccgtagacgggctc
agcgaatcggacaggctgggcttcagtccttctagagctgacgatgccttaaagacattg
tcggcgctgaagcaggtcctggtgacccagctcatgtcgcaggaggacggcgagggcgcc
gggcgctcctcctcagggggcgggcgtcttctcagaaccacatccctgaggacccccgtg
gacagccgggcccgggtggaggtgcagaatggctcagggaggtgcacccaggccagccac
cccgaggaccaggctcaggatctggtgtctggggacacaggcttctttgagtcgccggag
gattatgcagggtacctggtcctggagggctacggtggctcgggggagagcagcacggac
gacgacctccaggccacggggaagcagctgagcgcctcgcggggctgcggggccggagac
tctgggatcagcctgaggttctcctccgcctcacaggcaggtagcatctccagctttagc
cgtcaggtcctgtcccacatccgcaacctgcagaccaacctcaaccacctcaaggaggta
gaggccaagtatcacagtctactgcgccaaaggccggccaggtcatcgacagacgtggac
gataacaaagataagagatag
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integrated database retrieval system
