Coregonus clupeaformis (lake whitefish): 121567388
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Entry
121567388 CDS
T08357
Name
(RefSeq) neuronal PAS domain-containing protein 3
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121567388
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
121567388
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
PAS
PAS_11
PAS_4
PAS_9
Motif
Other DBs
NCBI-GeneID:
121567388
NCBI-ProteinID:
XP_045072823
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Position
6:42295167..42306620
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AA seq
684 aa
AA seq
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MEDGCVCSPISMFSLRRSSHSLATDMFEQHLGAHLLQSLDGFVFVVSSEGRFLYISETVS
IYLGLSQVELTGSSVFDYIHPADHVEMAERLGIRPHLRAEAGCHVAPESASSSASTSSLA
GTPEPAPSSPLSPGNEPPDRGFFIRMKSTLTKRGLHVKSSGYKVIHVTGRIRCRPAMVPG
SARSVRRPMGLVALAHTLPPSTLNEVRMESHMFVFRVNMDLQVTYCENRISEYMDLSPVE
VVGHTCYHFIHVEDLDNIRQSHEDLLRKGQVVTGYYRWLQRRGGYLWVQSCATVSINHKA
PHERNVIWVNYVISRTELPDTPLDLLQLPESLRAERLKASSSPSEHSPHARGPQPMKSSV
CKGDPDSKLREIYNPGVQSGDRRKRPLQSDSEGAPPETRRRLEEFRQREGSVSASSDLGS
ESEGEEREWEQGGDSGRVKREEGPSKRGGETPMRGERGGRVHNGRAVIQHLKSVVSSPLS
GPPNIKTEHEALATGGRWTHTHTSSHTQPPPSHTHTPCGSLNGDSPPTPIPDSSSSSEAP
PKGIFTPPSPAMSPPMSGSSPLPFEERGMLSGGRGGGSDFELLHRLAAGGAAGRVLFHPL
ALGPQGPQSLYAPSTIRYAPPELPTSHHGAEGLRSDHHKGPPAFFPHLQRLASLPSFSGF
SASDNPFNPFCMNGLRGAAGSEED
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggaggatggatgtgtgtgctcccccatctccatgttcagtttgcgacgctcctcccac
tctctggccactgacatgttcgaacagcacctgggagcacacctgctacagtctctggac
ggctttgtgtttgtggtaagctcggagggacgcttcctctacatatcagagactgtttcc
atctacctgggcctctcacaggtggagttgacgggcagcagtgtgtttgactacattcac
cctgcggaccacgtggagatggcagagcgtctgggaatcaggccccacctgagggccgag
gctggctgccacgtggcacccgagagtgcctccagctctgcctccacatcctccctggcc
gggacccctgagcctgccccctcaagccctctctctcctgggaacgaacctcctgaccga
ggcttcttcatccgtatgaagtccaccctcaccaagagaggcctccacgtcaagtcctcg
ggctacaaggtgatccatgtgaccgggcgaatccgttgtcgccctgccatggtgccaggc
tccgcccgctcggtgcgtcggccaatgggcttggtggcccttgcgcacacgctccctccc
tccacgctgaacgaagtgcgcatggagagccatatgtttgtcttccgggtcaacatggat
ctgcaggtcacttactgcgagaacaggatctcagagtacatggacctgagcccagttgag
gtggtgggacacacctgctaccacttcatccacgtagaagacctggataacatcagacag
agccatgaggacttgttgaggaagggtcaggtggtgacagggtactaccgttggctccag
aggagaggggggtatctgtgggtccagtcctgtgccactgtctccatcaaccacaaagcc
ccccacgaacgcaacgtgatctgggtcaactacgtcatcagtcggacagagctcccagac
actcccctggatctgctgcagctcccagagagtctgagggcggagcgtctgaaagccagc
tcctccccttcggaacactcgccccatgcccggggcccacagccaatgaaaagctctgtg
tgtaaaggtgaccctgactctaaactgagagagatctataatcccggcgtccaatcaggg
gacaggaggaagcgtccgctgcaatctgactctgaaggtgctcccccagaaacgcggcgt
cgcctggaagagtttcgccagagagaggggagtgtgtcagcctcctcagacctgggcagt
gagagcgagggagaggagcgagagtgggagcaggggggagacagcgggagggtcaaacga
gaggaggggccttcgaaacgaggcggggagacccccatgaggggcgagagaggtggcagg
gtgcacaacggccgtgcggtaatccagcacctgaagagtgtagtgtcctcgcctctctct
ggtccccccaacattaagactgaacatgaggcactggccacagggggtcgctggacacac
acacacacctcctcacacacacaacccccaccctcacacacacacacaccctgcggcagc
ctgaacggtgacagtccccccacccctatcccagactcctcctccagcagtgaagcccca
cccaaaggtattttcaccccaccctcccccgccatgtcccctcccatgtccggctcctcc
cctctaccctttgaggagcggggcatgttgtctggaggccgggggggcgggtctgacttt
gagctgttgcatagactggcagcggggggtgctgcaggacgggtgctgttccaccccctg
gccctcggcccccaggggccacagagcctgtatgcccccagtaccatccgctatgcgccc
ccagagctgcccacctcccaccacggtgctgaggggctgcgctccgaccaccacaagggc
cccccagccttcttcccccacctccagaggctggccagcctgccctccttcagtgggttc
tccgcctctgacaatcccttcaaccccttctgtatgaacggactgaggggggccgcaggg
tccgaggaggactga
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