Coregonus clupeaformis (lake whitefish): 121567394
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Entry
121567394 CDS
T08357
Name
(RefSeq) Down syndrome cell adhesion molecule-like protein 1 homolog isoform X1
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121567394
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
Other
121567394
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
fn3
ig
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
Pur_ac_phosph_N
Ig_5
V-set_CD47
C1-set
Ig_6
DUF1461
ChitinaseA_N
Motif
Other DBs
NCBI-GeneID:
121567394
NCBI-ProteinID:
XP_041733344
LinkDB
All DBs
Position
6:complement(42640138..42811835)
Genome browser
AA seq
2105 aa
AA seq
DB search
MWLVTLFLLYSLQEVNSEDVVSTRLYFVNASLQRVTFSSSVGVSLPCPAGGAPHAVLRWY
LATGDDIYDVPHIRHVHANGTLQLYPFSPSAFNSYIHDNDYFCTAENQAGKIRSPSIRVK
AVFREPYTVRVADQRSMRGNVAVFKCLIPTAVQEYVSVVSWEKDTVSIVPGNRFFLTSFG
ALYISEVQKEDALSTYRCITKHKYSGETRQSNGARLSVMDPTESTPSVLDSFQSGEVQVG
RNVELPCISSGYPNPTIRWLKDGRPLPADSRWTRRLTGLTVSDLRLDDSGNYICEVTNSF
GSKEVTGHLNVIEPLRVTLSPKNLKTGISSTVILSCAVQGSPHFTVSWYRNTEPVLFDQH
FSIQGAHNETLFIAAAQKRHSGAYQCFATRKGQTAQDFSIILLEDGTPRIVSSFSERVVV
PGEPFSLMCAAKGAPPPTITWTLDDEAVARDPSRVRASQYTLSDGSTVSHVNVSSPEIHD
GGVYRCAARNSAGSAEYQARINVRGSPRIRDMRNITAVAGRNTFINCRVIGYPYYSIKWY
KEGLLLPDNHRQVVYENGTLKLSDVQKVLDEGAYLCSVLIQPQIFISQTVYVQVKVPPLI
QPFDFPPTSIGKLMYIACVVSSGDMPIHITWRKDGQEIVPSSGVNIETKEYMSSLQIGKV
SLKHNGNYTCIASNDAATVSSERQLTVTVPPQFVVQPNNQDGIYGKAGVLNCSVDGYPPP
KVMWKHAKGIGNPQQYHPVPLTGRIQIMGNGSLLIRHVLEEDRGYYLCQASNGVGSDISK
SMVLTVKIPAMITSHPNTTMAIKGQVKELNCTARGEWPIIIRWERGDTVIDPDRNPRYAI
TTSPNEKSDEVLSTLKLKPAERGDSVFFSCHSINSYGEGRGLIQLTVQEPPDPPELEVRE
VKDRSMNLRWTQRFDGNSIITSYDIEYKNKTDPWELKHATRKISPTNNQANIVDLHPAQV
YSIRMFSYNKIGHSQASKELTISTEEAQPDGPPMEVILQPMTSQSIRVTWKAPRKELQNG
VIRGYQIGYRENGPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPS
SSEINATTLEDVPSQPPQNVRAISVTSDEAVITWAEPPRLTLHGVLKGYRVVFWSLFPDG
GGCCGGPTYPLPHAWAQGHTQKWGEMQNITTTREQVELRGLEKFTNYSVQVLAYTQAGDG
VRSNVLYIQTREDHPGPPAGIKAVPSSTSSVVVSWLPPHKPNGIIRKYTIYCSSPGSGQP
APSEYEANPELLFYRITHLNRGQQYLIWAAAVTTAGRGNISDKVTVEPAGKAPAKILSFG
GTVTTPWMKEVRLPCSSVGEPTPTIKWTKDSEDTAIPVTLDGQKLIMANGTLVLRSVKAE
DSGYYTCTATNTLGFDTIIVNLLVQVPPDQPRLTVSTTSTSSITLAWIPGDNGGSSIRGF
VLQYSVDNIEGWRDVFISSSERSFKLDNLRCGTWYKVKLAAKNSVGAGRISEIIEAKTHG
REPQFNKDQPVFTHINSTHARLNLQGWANGGCPITAVLLEFRPKGNWAWQNVHTNATADV
FLAELREATWYELKMKACNSAGCGNQSSQFATLDYDGSTIPPIKSARPEGDDVKKLFSIG
CPVILVTLVVALLFIIRKKRKEKRLKRLRDAKSLAEMLISSKNNRSFDTPVKGPPQGPRL
HIDIPRVQLLIEDKEGIKQIGEDKATIPVTDTEFSQNVNPQSFCTGVSVHHPALIQNTGP
LIDMSDIRPGTNPVSRKSVKSAHSTRNRYSSQWTLTKCQSSTPARTLTSDWRTVGSQHGI
TVTESDSYSASLSQDTDKGRNSMVSTESASSTYEELARAYEHAKLEEHLQHAKFEITECF
ISDSSSDQMTTGTNDNGDSMTSMSTPSETGLCRFTASPPKPQDYDRGRPTNVAVPIPHRA
NKSEWTAKSDYCNLPLYMKTDPFFRKQSELHEPCPVVPPREASIRSLAQRAYHTQGRHMT
MDSSKQQQALTVGHAGLAGLSASGGASGGGSGSGGAVGGATGGPSGGSSTSSLPQRTLTM
PGSSSSSAQSAAAAAATTAAASASGGATGGDSRDSLLESSSSGLGRLDRQKQAAGGAYSK
SYTLV
NT seq
6318 nt
NT seq
+upstream
nt +downstream
nt
atgtggctggtaactttattcctgctgtattctttacaagaagtgaacagtgaggatgtg
gtctcgacgcggctgtactttgtaaacgcctccctgcagcgggtgaccttctccagctcg
gttggggtgtccctgccctgccccgcgggcggcgcaccccatgccgtcctgcgctggtac
ctggccaccggcgatgacatctacgacgtgccccacattcgccacgtgcacgccaacggc
accctccagctctaccctttctcgccctccgccttcaacagctacatccatgacaatgac
tacttctgcaccgcagagaaccaggccggcaagatccgcagccccagcatccgcgtcaaa
gcagtgttcagggagccctatacggtgcgggtggcagaccagcggtccatgcggggcaac
gtggccgtgttcaagtgcctcatccccacggccgtgcaggagtacgtcagcgtggtgtcc
tgggagaaagacactgtctccatcgtgccagggaaccgtttcttcctgacgtcgttcggg
gccctgtacatatcagaggtccagaaggaagatgccctgtctacctaccgctgcatcacc
aagcacaaatacagtggagagactcgccagagcaatggagccaggctctctgttatggac
cctacggagtccaccccctcagtgttggacagtttccagtccggggaggtccaagtggga
cgtaatgtggagctgccctgcatctcctcgggctaccccaaccccaccatccgctggctg
aaggacggacgaccgctgcccgccgactcccgctggacgcgtcgcctcacgggcctgacg
gtcagcgatctgcgtctggacgacagcggcaactacatctgtgaggtcaccaacagcttc
ggctctaaagaggtgaccggtcatctcaacgtcattgagccgttgagagtgactctatct
cctaagaacctgaagacgggcatcagcagcacagtgatcctgtcgtgtgccgtgcagggt
tctccccacttcaccgtgtcctggtaccgcaacacagaacccgtcctcttcgaccagcac
ttctccatccagggggcccacaacgagactctgttcatcgccgctgcccagaagagacat
tcgggagcctaccagtgcttcgccacccgcaagggccagaccgcacaggacttctccatc
atactgctggaggatggtacaccccgtattgtgtcctccttcagtgagcgcgtggtggtc
ccaggggaacccttttccctcatgtgcgctgccaaaggcgcccctccccccaccatcacc
tggactctggatgatgaggctgtggccagggacccgtcccgggtgagggccagccaatac
acgctgtcggacggctccaccgtgtcccatgtcaacgtcagcagcccggagatccacgac
ggaggggtgtatcgctgcgccgcacgcaactcggccggtagcgccgagtaccaagcgcgc
ataaacgtaagaggttctcccaggatcagggatatgcgtaacatcacggcggtggctgga
aggaacacctttataaactgccgtgtgattggttatccctactactcaatcaagtggtac
aaggaggggcttctgctgcctgacaaccatcgtcaggtggtgtatgagaatggtactctg
aagctaagtgatgtccagaaggtcttggacgagggggcgtacctctgcagcgtgctcatc
caaccacagatcttcatcagccagaccgtctatgtccaagtcaaagtgccccctctgatc
caaccctttgacttcccccccacctccattgggaagctcatgtacatcgcctgtgtggtg
tcgtctggcgacatgcccatccatatcacttggcgtaaggatggccaggagattgtgccc
tcgtccggcgtcaacatcgagaccaaggagtacatgagctcactgcagatcggcaaggtg
tcgctcaaacacaacggcaactacacatgcatcgctagcaacgacgccgccaccgtcagc
tctgagagacagctcactgtcacagtgcctcctcagtttgtggtccagcccaataaccag
gatgggatctacggcaaggcgggggtcctcaactgctccgtggatggatacccccctccc
aaagtcatgtggaagcacgccaaaggtataggaaacccccagcagtaccacccagtgcct
ctgaccggtcggatccagatcatggggaatggctccctgctgattcgtcacgtcctggag
gaggaccggggctactacctctgtcaggcctccaacggagtgggctccgacatcagcaag
agcatggtcctgaccgtcaagatcccagcaatgatcacgtcgcaccccaacaccaccatg
gccattaagggacaggttaaggagctgaactgcacagcgaggggggaatggcctatcatc
atccgttgggagcgtggtgacacagtcatcgacccagaccgtaaccctcgctacgccatc
accaccagccccaacgagaagagtgacgaagtattgtctacgctgaagctgaagccagca
gagcgtggtgactcggtcttcttctcctgccattccataaactcatatggagagggccgg
ggactcatccagctcactgttcaagagcccccagaccctccagagttggaggtgagggag
gtgaaggatcggagtatgaacctgcgctggacccagagatttgatggcaacagcatcatc
accagctacgacatcgagtacaagaacaagactgatccgtgggagttgaagcatgccacc
cgtaagatctctcccaccaataaccaggctaacatcgtggatctacaccctgcccaagtc
tacagcatccgcatgttctcttacaacaagattggacacagtcaagccagcaaggagctc
accatcagcacagaggaagcacagcctgatggtcctcctatggaggttatcctccagcct
atgacctcacagagcatccgtgtcacctggaaggcccccaggaaggagcttcagaacggg
gtgatccgggggtaccagatcggttaccgtgagaacgggccgggcagtaacggccagtac
agcatcgtagagatgaaggctacgggggacagtgaggtgtacaccctggacaacctgaag
aagtttgcccaatatggagtggtggtccaggccttcaacagggccggcacaggcccctcc
agctctgagatcaacgctaccacactggaggatgtgcccagccagccaccccagaacgtt
cgggccatctcggtgacatcagacgaggcggtaatcacgtgggcagagcccccacgtctg
acactgcacggcgtgctaaagggctaccgcgtggtcttctggtccctcttccctgacgga
ggtgggtgctgtgggggcccgacgtacccgctccctcacgcatgggcacagggccacacg
cagaaatggggagagatgcagaacatcactacaactcgtgagcaggtggagctgagaggg
ctggagaagtttactaactacagcgtccaggtgctggcatacacacaggctggggacggg
gtcaggagcaatgtgctgtacatccagacccgcgaggaccaccctggccctccggctggc
atcaaagcagtgccctcatccaccagcagtgtggtggtttcctggctacccccgcacaag
cccaatggaatcatccgcaagtacaccatctactgctccagccccggatcaggccaaccg
gcccccagtgagtacgaggccaaccccgagctgctgttctaccggatcacccacctgaac
cgcggacagcagtacctcatctgggccgccgctgtcaccaccgccggacgtggcaacatc
agcgacaaggtcactgtggagcctgctgggaaggccccagctaagatcctatcgtttgga
ggtacagtgaccactccctggatgaaggaggtgaggctaccctgcagctcagtgggcgaa
cccacccccaccatcaaatggaccaaagacagtgaggacacagccatcccggtgactctg
gacggtcaaaagctcatcatggccaatggcacgctggtcctgcgctcggtgaaagctgag
gattctgggtactacacgtgcacggccaccaacacgctgggctttgataccatcattgtc
aacctgctggtgcaagttcccccagaccagccccgtctgactgtctccaccacctccacc
tcctctatcaccctggcctggatccctggggacaacggaggatcctccatcagaggtttc
gtgctgcagtactcggtggacaacatagaggggtggagggacgtgttcatcagttccagt
gagaggtccttcaagctggacaacctacgctgtggcacctggtacaaggtcaaactggcc
gccaagaacagcgtgggagcgggtcgcatcagtgagatcatcgaggctaagacacacgga
cgagagccccagttcaataaggaccagccggtgttcacccacatcaactctacccacgcc
aggctcaacctgcagggctgggcgaacggtggctgtcccatcacagcagtgcttctggag
ttcagacctaaggggaactgggcgtggcagaacgtgcacaccaacgccaccgccgacgtg
ttcctggctgagctccgcgaggccacctggtacgagctgaagatgaaggcctgtaacagc
gccggctgtggaaaccagagctcccagttcgccacgctggactatgacggcagtaccatc
cctcccatcaagtcagcgcggccggagggcgacgacgttaagaagctcttctccattggc
tgccccgtcatcctggtcactctggtcgtcgccctgctcttcatcatccgcaagaaacgc
aaagagaagagactgaagcgactgagagatgccaaaagcctggctgagatgctgatcagt
agtaagaataaccggagctttgacacccctgtgaagggaccccctcagggcccccgactc
cacatcgacatccccagagtccagctgctcatcgaggataaggaaggaatcaaacagatt
ggtgaagacaaagccaccatcccagtgactgacacggagttcagccagaatgtgaatcca
cagagcttctgtacgggcgtgtctgtgcatcaccccgccctcatccagaacaccggccct
ctgattgacatgtccgacatcagaccagggaccaacccagtgtcgaggaagagcgtgaag
tcggcccacagtacgaggaatcgctactccagccagtggaccttgaccaagtgccaatca
tccacgcccgcccgtaccctcacgtccgactggcgcaccgtgggctcccagcatggcatc
actgtcaccgagagcgacagctacagcgccagcctctcacaggacacggataaggggcgt
aacagcatggtgtctacagagagtgcgtcgtccacctatgaggagctggcgcgggcctat
gaacacgccaagcttgaggagcacctacagcacgccaagtttgagatcactgagtgcttc
atctccgacagttcctcagaccagatgaccacgggcaccaacgacaatggcgacagcatg
acctccatgagcaccccgtccgagacgggcctgtgtcgcttcaccgcctcgccacccaaa
ccccaggactacgaccgcggaagacctaccaacgtagccgtgcccatcccccaccgcgcc
aacaagagcgagtggactgccaaaagtgactactgtaaccttcccctctacatgaagaca
gaccctttcttccggaagcagtcggagcttcatgaaccatgcccggtggtgccgccccgt
gaggcctccatccgcagcctggcccagcgggcgtaccacacccagggtcgccacatgact
atggactcttccaagcaacagcaggctctgactgtgggccatgctggcctggccggcctc
agcgcctcagggggagcatcagggggtggtagtggcagtggtggtgctgtaggaggggcg
actggagggccgtctggtggttccagcacctcctccctgcctcagaggactctcaccatg
cccggctcctcctcatcctctgcccagagtgctgcagctgctgccgccactaccgccgca
gcctcggccagcgggggagccacggggggagactccagagactctctgctggagagcagc
tcgtcaggcctgggcagactagacagacagaagcaggcggctggcggggcctactccaaa
tcttatacactggtgtag
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