Coregonus clupeaformis (lake whitefish): 121567412
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Entry
121567412 CDS
T08357
Symbol
nlrc3
Name
(RefSeq) NLR family CARD domain-containing protein 3 isoform X1
KO
K22614
NLR family CARD domain-containing protein 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cclu04054
]
121567412 (nlrc3)
Pattern recognition receptors [BR:
cclu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
121567412 (nlrc3)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LRR_6
NACHT
NLRC4_HD2
NOD2_WH
CARD
AAA_16
LRR_12
Motif
Other DBs
NCBI-GeneID:
121567412
NCBI-ProteinID:
XP_041733374
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Position
1:35258463..35286049
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AA seq
1135 aa
AA seq
DB search
MERNTHYNSILDRNKRIAWQEDCYVDLQSTPSSASTKGEMEDVGWIQKHQGQLQRFITTP
LLEGALSHMKKLELLSQGEEAQVQAGGQLQDRVGTLTSILASMEPQGSDALQAFIENSDS
QVYRLITMHDPMVQEHKEALLLQYPTPSDSLSSGPSSPEFSSSRVLLLVDGLSDLQQKEH
DLMQVEATRGARRHHVRQLALAKLLEPLTRVSLPPRVSLTVGVAGIGKSTLVGHFVRLWS
RGEICTDVSFVLPFAFWELNTGEKLSAERLVKLAFPHMTDPSLVLSGTCRTLLIFDGLDE
FRCPLDFSEAAPCTDPKKEVSVDDLVTNIIRGNLLPEAAVWVTSRPAVASLIPGGLVDRV
TEIPGFSPKEIRLFLSHNFPKGDTASQIWTHLESNKILMVMSYMPCICWIVAVTFGYLLE
SGWQEGLPRTCTELYSHFCAMRAEAGEPRGREPIKMDQLNGNNRKLLGSLGRLAFYGLLK
HKYTFSEQDMRAYGVDLPSTQGGLGTGVLIREDSPNCVAYRFTHLTVQEFLAATYYHICS
KRAIFDLFTESAMSWPKIGFQNHFRSALQRSQQAEDGHLDVFVRFLAGLLCPAAVRPLAG
LLAQGKDDGGQRVWAAGLLQDLLGSGGAVVSLRSVNVAYCLQELQHTEVLRSVEEDLRCG
GLGGKLTRTHRTALAYLLQVSPECSEETNLSACLDYSTVKSLLPQLLYCSHLRLENNHFK
DDVMELLGSLLSAKDCHLQKISLAENAISNKGAKALSRALLVNRTLITLDLRSNNIGSKG
AKFLAEALKMNQVLVSINFQNNRIEEEGAHALAEVLLSNRKLVSLNVQKNCIGADGAKRI
AEALKTNRTLTELILSSNQLGDKGTAALAQALTVNHSLLSLHLQSNSISNKGMTALTKAL
RLNRGLISLNLRENSIGVEGAKDMARALQENSSLRHLDLTANLLHDEGVKAIAGAVKVNR
ALTSLHLQWNFIKCTATKSLAHALLTNSTMQLLDLQENAIGDEGVVALAGALKTNASLCT
LCLQGVSAGRSGAISMAEALMVNKTLHTLDLRGNSIGMEGAKALANALKTNRTLKSLNLQ
ENSLGMDGAIFIATALKGNHQLTYINLQGNGIGESGAKVISDAIRTNSPDCVVEI
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaaacacccattacaattctatcctggacagaaacaagcgtatcgcatggcaa
gaggactgctatgttgacctccagtctacccccagctcagcttccaccaagggagagatg
gaagatgtgggctggatccagaaacaccaggggcagctgcagcgcttcattaccactccc
ctcctggagggggcgctgtcccacatgaagaagctggagctgttgagccagggggaggag
gcccaggtacaggctggggggcagctgcaggaccgggtgggcaccctcacctccatcctg
gccagcatggagccccagggctccgacgctctccaggccttcattgagaactctgactcc
caggtgtaccggctcatcacgatgcacgaccccatggttcaggagcacaaggaggctctt
ctgttgcagtatcccacaccaagtgacagcctctcctctggcccctccagcccagaattc
tcctcctccagagtattgctcctggtcgacggcctctcagacctccagcagaaggagcac
gacctcatgcaggtagaggccacccgtggggcgcggagacaccacgtcagacagctggcc
ctggccaaactcctggagcccctcacccgggtcagcctgccccccagggtctccctcacc
gtgggagtggccggcattggcaagagcacccttgtgggacattttgtacgcctttggagc
cgaggcgagatctgcacggacgtgagttttgtcttgccctttgccttctgggagctgaac
actggggagaagctgtcggccgaaaggctggtgaagctggccttccctcacatgacggac
cccagcctggtgctgagtggcacatgtcggacattgctgatcttcgacggtctggacgag
ttccgttgtcctctggacttctcggaggctgcgccttgcaccgaccccaagaaggaggtg
tcggtggacgacttggtcaccaacatcatccggggaaacctgctccctgaagcagcggtg
tgggtgacctccaggccggcggtggcctcgttgattcctgggggactagtggacagggtg
accgagatccccggattcagcccgaaggaaatccggctgttcctgagccacaacttccct
aagggagatactgccagtcagatatggactcacttggagtccaacaagatcttaatggtg
atgtcttacatgccttgcatttgctggatagtggcggttacctttgggtacctattggag
agtggctggcaggagggccttcccaggacctgcactgagctctattcccacttctgcgct
atgagagccgaagcaggcgagcccagaggcagagagcctatcaagatggaccagcttaac
gggaacaaccgcaagctgctgggaagtctgggccgactggccttctacggacttctgaag
cacaaatacaccttcagtgagcaggacatgagggcctatggagtagaccttccatccacc
cagggtggcctcggaactggagtactgatccgcgaggattccccgaattgtgtggcctac
cgcttcacccacctgactgtgcaagagttcttagcagccacatactaccacatctgctcc
aaacgtgccatctttgacctgttcaccgagagcgccatgtcctggcccaagatcggcttc
cagaaccacttcaggagtgccctgcagcggtcccagcaggcggaggatggtcacctggac
gtgtttgtgcggttcctggcagggttgctgtgtccagcggcagtgcggccgctggcaggc
ctgctggcccaggggaaggacgatgggggccaaagggtttgggcggcggggctgctgcag
gacctcctgggcagcgggggtgctgtggtgtcactgcgctcagtgaacgtggcctactgc
ctgcaggagctgcagcacacagaggtgctacgcagcgtggaggaggacctgcgctgtggc
ggcctgggagggaagctaacacgaacacaccgcacagcgctggcctacctgctacaggtg
tctccagagtgcagtgaggagaccaacctgtcggcatgtctggactactccactgtcaaa
agcctgctgcctcagctgctctactgcagccatctcagattggaaaataaccattttaaa
gatgatgtcatggaactgctgggaagcttactgagtgcgaaggactgccaccttcagaag
ataagtctggcagagaatgctatcagcaacaaaggggccaaggccctgagtcgagcactg
ctggttaaccggacactgattacgcttgatctccgtagcaacaacattggatctaaaggc
gccaagtttctagcagaagccctcaaaatgaatcaggtcctggtgtccatcaatttccaa
aataatcgcattgaggaggagggtgctcatgccctggctgaggtgctgttgtccaaccgc
aagcttgtctcgctgaatgtacagaagaattgtattggagcagatggagccaagaggatt
gcagaagcgctaaagacaaaccggacacttacagaactgattctgagcagtaaccagctt
ggggataaaggcactgcagccctggcccaggccctgacagtcaaccacagcctcctctcg
ctgcacctgcagagtaactccatcagtaacaaagggatgactgcgttaaccaaggctctg
cggttgaaccgtggactcatctctctgaatctgcgtgagaactcgatcggggtggagggg
gcgaaggacatggccagggcactgcaggagaacagctctctccggcacctggatcttaca
gccaacttgctgcacgacgagggggtgaaagccatagctggagctgtgaaggtcaaccga
gcgcttacttctttacatctccagtggaatttcatcaagtgcacagccactaaatccttg
gcccatgctctactcaccaactccaccatgcagctactagatctacaggagaatgccatt
ggggatgaaggagttgtagctctggcaggagccctgaagaccaatgcgtctctctgtact
ttgtgtctccagggtgtatcagcaggcaggagtggtgccatctcaatggctgaggctcta
atggtcaacaaaaccctgcacactctggacctacgagggaactccatagggatggaggga
gccaaggctttggctaatgcactgaagacaaacagaacactcaaatcattaaatctgcag
gagaactctctgggaatggatggagccatattcatcgccacagccctgaaaggaaaccac
cagctaacttatataaacttgcaggggaacggcatcggagagtcaggagcaaaggtcatc
tctgatgccatcagaaccaactctccagactgtgtggtggagatctga
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