Coregonus clupeaformis (lake whitefish): 121567527
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Entry
121567527 CDS
T08357
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04137
Mitophagy - animal
cclu04140
Autophagy - animal
cclu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121567527
04137 Mitophagy - animal
121567527
04148 Efferocytosis
121567527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121567527
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
121567527
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GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
121567527
NCBI-ProteinID:
XP_041733580
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All DBs
Position
6:4826675..4846179
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AA seq
635 aa
AA seq
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MDKKEEPVGQRSSTDQRKVRSRDAARCRRSQETELFYELAHTLPLPRRVSADLDKAAIIR
VTLSFLRMHYLRSAGDTSEERVTDGDEDMMDGFYPRALAGFIMVMTEEGDMIYLGDSVNK
HLGIPQLELLGQSVYDFVHPCDQEELRDLLTPRPGVSKKKPVQQHTEMAFFLRMKSTLTE
RGRTVNIKSATWKVLHCTGHMRVCCSDEDSSPPAGRFMTVLCEPIPHPSSVEFPLDRSTF
LTRHSMDLCFTHCEGRVAELVGYEPEYLIGKSAYEFHHALDSDHVTKSLHILLSKGQVCT
SQYRFLAKSGGFVWAETQATVIYNNKTSQPEAVVCLNFILSVVEQADVVFSVEQTGCGLK
SDPVSEASEETLCDSDNRNNSDNSSSAELFLQLKENPEDLLQLAPVSGDLIVPLADFAEL
SFSLPSSPDSVPDFPQDLCTPELWTLLSPIFSKLTSSSPAPALIPIEELPIEDEVEKFFA
VCPDESVQKEDQPEDAEVIDLDMLAPYISMDDDFQLSVQLPETPDSLYPEPPTATRKRSH
ELDEDMPSQLMSQDKRPRHSVSPIEQELLLNYTLLDCPEDADSPELELGPRPCRRSQLLT
DRDPILGEAQGLCDTAALMRDLFLSRPPDPLTSLT
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggataagaaggaagagcctgttggacaacggtcgagtacggatcagcggaaggtgcgt
tcccgggatgcggcgcgctgcaggcggagtcaggagacggagctgttctacgagctagcc
cacaccctccccctcccccgcagagtctccgccgacctggacaaggccgccatcatccgg
gtgacgctcagcttccttcgcatgcactacctccgctcagcaggggatacgagtgaggag
cgcgtcacagatggggacgaggacatgatggatgggttctacccccgagcgttggcaggc
ttcatcatggtgatgacagaggagggggatatgatctacctgggtgacagcgtcaacaaa
cacctgggcatcccacagctggagttgctgggccagagtgtgtatgactttgtccaccca
tgtgaccaagaggagctacgggatctcctgacgcctaggccaggtgtgtccaagaagaaa
ccagtgcagcaacacacggagatggccttcttccttaggatgaagagcactctgactgaa
agagggcgcactgtcaacataaagtctgccacctggaaggtgctgcactgtacaggccac
atgcgtgtgtgctgcagtgacgaggattcgtcaccccctgcaggccgcttcatgacggtg
ctgtgtgagcccatcccccacccgtccagtgtggagttccctctggaccgcagtaccttc
ctcactcgacacagcatggacctgtgcttcacacactgcgagggcagggtggcagagcta
gtgggatacgagccagaatatctgattggcaaatctgcctatgaattccatcatgccctg
gactcggatcatgtgaccaagagcctgcacatccttctttccaaaggccaggtgtgcacc
agtcaataccgtttcctggctaagagtgggggcttcgtgtgggcagagacccaggctaca
gtcatctacaacaacaagacctcccaaccagaggctgtggtctgtcttaactttatcctc
agtgtggtggagcaggcagatgtagtgttctcagtagagcagactggctgtgggctgaag
agtgatcctgtctctgaggcctcagaggagaccttgtgtgatagtgacaacaggaataac
agtgacaacagcagcagtgcagagctcttcctccagctgaaggagaacccagaggacctc
ctccaactggcccctgtctcaggagacctcatcgtacccctcgcagactttgcggagctg
tcgttcagccttccatcaagccctgactccgtcccagatttcccacaggacctgtgcacc
cctgagctgtggacgctcctttcacccatattcagcaagctcacctcatcatcaccagca
ccagcactgatccccattgaggagctaccaatagaggatgaggtggagaagttctttgcc
gtctgtccagatgagagcgtgcagaaggaagaccagcctgaggacgcggaagtgattgat
ctggacatgctggcgccatatatctccatggatgatgatttccagcttagcgtccagctc
cctgagacccctgacagcctctacccagagccccccactgctaccaggaaacggagtcat
gagctggatgaagacatgccctcccagctgatgagtcaggacaagagaccgagacactcg
gtgtcccccatcgagcaggaactgcttctcaactacaccctgctggactgccctgaggat
gcagacagcccagagttggagctggggccacgcccctgcaggcggagccaactgctgacg
gacagggaccccatcctcggtgaagcccagggactatgtgacaccgcagccttgatgagg
gacctcttcttgtcccgcccacctgaccccctgacctctctgacttga
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