Coregonus clupeaformis (lake whitefish): 121567553
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Entry
121567553 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121567553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121567553
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121567553
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
HECT type E3
121567553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
Motif
Other DBs
NCBI-GeneID:
121567553
NCBI-ProteinID:
XP_041733618
LinkDB
All DBs
Position
6:5586837..5638158
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AA seq
2065 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDHTVAGRLQSEQVKHKANSPPESRRPKSKASKAA
PSSASGQSKGHSSRSSSLSLSVASFVLQDDPEAAGTSEREPTGHQSKSEGTTRGLKRSSA
PDLNNTYTPTPAKKSKSHPPPRDHTTEAKKGPAKSSKKRPLAPEPPAPTGRGQSRKSGAS
GASPSQKRKKADSLPGLSSTAGSLPNRTDGRSAKPTKLASKSAASAKAGCSTVTDSSSSA
STSSSSSTGANSATATQGARLKQGKDQNKARRSRSASSPSPRRSTRDKEQAKAAVSSKFE
WAARFSPKVNLPKPKLSLPGSSKTETTSKPGPSGLQAKLASLRKSTKKRSESPPAELPSF
RRSTRQKTTGSCASTSLCSRRGSGLGKRGAAEARRQEKMADSDNNQDGANSSAARTDEAP
QGASGTASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHR
TIGSGASSKAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITL
LQMEHNFDIMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEM
LSRRHSKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVSDSLPLLT
QRLTHQDKKSVESTCLCFARLVDNFQHEENLLQQVATRDLLTNIQQLLVVTPPVLSSGMF
IMVVRMFSLMCSNCPCLAVQLMKQNIAETLRFLLCGAANGSCQEQIDLVPRSPQELYELT
SLICELMPCLPREGIFAVDLMLKKGSAQATEGAIWQWRDDRGLWHPYNRIDSRIIETAHQ
NGEDEISLSTLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLANPTTGGLQEVRREDARA
QLMKEDPELAKCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIFFADAELLKDVLRNH
AVSSHIASMLSSQDLKIVVGSLQMAEILMQKLPDVFSVFFRREGVMHQVKNLAESEAFLT
SPPKACTSGTASLCTTTISTATTTVATNATPDLGSPSFQHSMDDSLDLSPQGRLSDVLKR
KRLPKRGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGKLGAQTNSTNS
EPSRTAGVSGLARAPPKDSVSNNREKIKAWIKEQACKFVARYFNTENIDGSNPALNVLQR
LCTATEQLSLQMDGGVECLVEICSIVSESDVSSFEIQHSGLVKQLLLYLTSSSDRDLVSR
DIRLKRFLHVFYGCPIPGMEPAGRLEPSENGPLLSLVHKMNNCLSQMEQFPVKVHDFPSG
NGNGSRGSQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGY
GRIREEDEDSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYIGDHLLPYNMTVYQAVRQFS
LQAEEERESTDDEANPLGRAGIWTKTHTIWYKPVREDEDGTKDAVGGKRGRAQTAPTKTS
PRNAKKQDELWHDGVCPSVASPLEMYLMSEPPESITFDDPSLDVNLLLRVLHSISSYWFY
LYDNAVSKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTR
QMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINREELLKQAESVMQ
DLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPKGSQEGT
KYMFSSRGLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWML
RHETSISSHDLVNIDPGVAKSIQHLEDIIRQKKRLEQDRSQTRENLQQALESLNMNGCSV
EDLGLDFTLPGFPNIELKKGGKDIPVTIYNLEEYLRLVVYWTMNEGVSRQFESFREGFES
VFPLHHLQYFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVRFLFDVLSSFD
AEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPD
YSSIEIMRKKLLIAAREGQQSFHLS
NT seq
6198 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagaccatacagtcgcgggaaggttgcagtcagagcaggtaaaa
cataaagcaaattcccctcctgaaagtagaagacctaaatctaaggcttccaaagctgca
cccagctcagcctctggccagtccaaagggcacagctcaagaagtagcagtctgtcactg
tctgtggcttcatttgtgctgcaagacgacccagaggccgcagggacatcagagcgagag
ccaacaggccaccaatccaagagtgaaggcactacccgagggttgaagagaagttctgca
cctgacctcaacaacacatacacccccaccccagccaagaagtccaaatcccacccccca
cccagagaccataccactgaggccaagaaaggccctgccaagtcctccaagaagagaccc
ctggctccagaaccgcccgcgcccacaggccgcggccagagcaggaagagcggggcctct
ggggcctcaccgtcccagaaacggaagaaggctgactccctccccggtctgagcagcact
gctgggtccctccccaaccgtaccgacggcagatctgcaaaacccaccaagctggcgtcg
aaatcggccgcctcagccaaagctgggtgtagcaccgtgactgactcctcctcttctgcc
tccacctcgtcctcctcctccaccggcgccaacagtgccaccgccacgcagggtgccagg
ctcaagcagggcaaagaccagaacaaggcacgtcgctcccgctctgcctctagcccctcc
ccacgccgaagcacccgcgacaaggagcaggccaaagccgccgtctcgtccaagtttgag
tgggcggcccgcttcagccccaaagtcaacctgccaaagcccaaactgtccctacctggc
tcctccaagacagagaccacctccaaacctgggccctcaggactacaagccaaactagca
agtttgaggaagtccactaagaagcgcagcgagtctcctccagcagagctccccagcttt
cggcggagcacacggcagaagaccacgggctcctgcgccagcaccagtctgtgcagtcgg
cgaggctcaggcctgggcaagcgtggggcagccgaagctcgccgacaggagaagatggcc
gactcggacaacaaccaggacggggccaactcctcggccgcccgcactgacgaggccccg
cagggggcttcaggtacagcttctagctcagtggccggagctgtagggatgaccacatcc
ggtgagagcgagtcggatgactctgaaatgggcagactccaagccctgctggaggccagg
ggtctacccccacacctctttgggcccttgggaccccgcatgtcccagctgtttcacaga
accataggcagtggagccagctccaaggctcagcagctgctgcagggcctgcaggccacc
ggcgacgagtcccagcagctccaggccgccatcgagatgtgccagctgctggtgatgggc
aacgaggagacgctaggaggcttccctgtgaagagcgtggtgcccgctctgatcacattg
ttgcagatggagcataactttgacattatgaaccacgcctcacgtgctctcacttacatg
atggaggcgctgcctcggtcctctgctgtggtcgtggacgccatccccgtcttcctggaa
aagcttcaggtgatccaattcattgacgtggcggagcaggccctgactgccttggagatg
ttgtcaaggcgacacagcaaagccatcctgcaggctggtggcctggctgactgtctgctg
tacctggagttcttcagcatcaacgcccagaggaacgctctggccattgccgccaactgc
tgccagagcatcacccctgacgagttccactttgtctctgactctctgccactgctgacc
cagagactcacacaccaggataagaaatccgtcgaaagcacttgtctctgttttgccaga
ctggtggataactttcaacatgaggagaacctgctgcagcaggtggccacgcgggacctg
ttgaccaacatccagcagctgctggtggtcaccccgcccgtgctcagctcgggcatgttc
atcatggtggtgcgcatgttctccctcatgtgctccaactgcccctgtctggccgtgcag
ctcatgaagcagaatatcgcagagactctgcgtttccttctgtgcggagcggccaacggt
agctgccaggagcagattgacctagtgccccggagcccccaggagctctacgaactcacc
tcactcatctgcgagctgatgccctgcctgcccagagagggcatctttgctgtggacctc
atgctgaagaagggcagtgcccaggccacagagggggccatctggcagtggagggacgac
cggggcctgtggcacccctacaaccgcatcgacagtcgcatcattgagacggcccaccag
aacggagaggacgagatcagcctgtccaccctgggccgcgtctacaccatcgacttcaac
tctatgcagcagatcaacgaggacactggcacagcacggggtatccagaggaaacccaac
cccttagccaaccccactactgggggtctccaggaggtgaggcgggaggatgcacgggcc
cagctgatgaaggaggaccctgagctggccaagtgcttcatcaagaccctgttcggggtg
ctgtacgaagtgtacagctcgtcggcgggcccagccgtcagacataagtgcctccgagcc
attctcaggatcatcttctttgccgatgccgagctcctcaaggatgtgctgaggaaccac
gctgtgtccagtcacattgcctccatgctgtccagccaggacctgaagattgtagtgggc
tctctgcagatggctgagatcctcatgcagaagctgcccgacgtattcagtgtcttcttc
agaagagaaggtgtgatgcaccaggtgaagaacctggctgagtctgaggccttcctcacc
agtcccccaaaggcgtgcaccagcggcacggctagcctgtgtaccaccaccatcagcact
gcgaccactactgtggccaccaacgccaccccagacctgggctcacctagcttccagcac
agcatggacgactcactagacctcagcccacagggacggttaagtgatgtgctgaagaga
aaacgtctgcctaagagagggcccagaaggcccaagtattctcctcccagggacgacgac
aaagtagacaatcaggccaagagtcctaccaccactcagtcccccaaatcctccttcttg
gccagtctgaaccccaagacctggggcaagctaggcgcccagaccaacagcaccaactct
gagccctctcgcacggccggggtgagcggcctggcacgcgcccctcccaaggactcagtc
tccaacaacagggaaaagatcaaggcttggatcaaagagcaggcctgtaagtttgtggcg
cgctacttcaacactgaaaacattgatggcagcaaccctgcactgaatgtactccagaga
ctctgcaccgccacggaacagctcagcctgcagatggacggtggcgtggagtgcctcgtg
gagatctgcagcatcgtgtcagagtcggacgtgtcgtcgttcgagatccagcacagcggc
ctggtcaagcagctgctgctctacctgacctccagcagtgaccgtgacctggtcagccgt
gacatccgcctcaagaggttcctgcatgtcttctacggctgcccgatcccggggatggag
ccggcaggccgcctggagccgtctgagaacgggcccctgctgtcactggtgcacaagatg
aacaactgccttagccagatggagcagttccctgtcaaggtgcatgacttccccagtggc
aacggcaacgggagcagagggtctcaggccctgaagttcttcaacacacaccaactcaag
tgtcagctgcagaggcacccggactgcaccaatgtgaagcagtggaaggggggcccggtg
aagatcgaccccctggccttggtacaggccattgaacgctacctggtggtccgaggttac
ggacgaatcagagaggaggatgaggacagcgatgatgatggttcagacgatgaaattgat
gaatctctggcggcccagttcctgaactctggcagcgtgcgccaccggctacaattctac
atcggcgaccacctgctaccctacaacatgactgtgtatcaggcggtgcggcagttcagc
ctgcaggccgaggaggagagagagtccacggacgatgaggccaacccgctcggacgggct
ggcatctggaccaaaacccacaccatatggtataagccagtgagggaggatgaggatggc
actaaggatgcggtgggagggaagaggggccgggcacagaccgcccccaccaagacctcg
ccccgcaatgccaagaaacaggacgagctgtggcacgacggcgtgtgtcccagcgtggcc
agccccttggagatgtacctcatgtcggagcccccggagagcatcacctttgatgacccg
tctctggacgtcaacctgctgctgagggtgctgcactccattagtagttactggttctac
ctttacgacaatgctgtgtctaaggagatcatccccaccagtgagttcatcaacagtaag
ctgacagccaaggccaaccgacagctgcaggaccctctggtcatcatgaccggcaacatc
cccacctggctcacagagctcggcaagacctgtcccttcttcttcccgttcgacacacgg
cagatgctcttctatgtaacggcgtttgaccgcgaccgggccatgcagcgcctcctcgac
accaaccccgagatcaaccaatcagattctcaggacagccgcgttgcgccccgcctcgac
aggaaaaagcgaacgataaaccgtgaggagctgctgaagcaggcggagtcagtgatgcag
gacctaggcagctccagagccatgctggagatccagtatgagaacgaggtgggcacaggg
ctgggtcccaccctggagttctacgccctggtctcccaggagctgcagagggccgacctc
gggctgtggaggggtgaggaggtcaccctgtccaaccccaaaggaagccaagaagggacc
aagtacatgttcagctcccgagggctgtttgccgttcccttcggcaggacaaccaaaccg
gcgcacatcgccaaaatcaagatgaagttccgcttcctgggcaagctgatggccaaggcc
ataatggacttcagactgctggacctgcccctagggctgcccttctacaagtggatgctg
cggcacgagacgtccatcagctcccacgacctggtcaacatcgacccgggtgtggccaag
tccatccagcacctggaggacatcatccgccagaagaagaggctggagcaggaccgctcc
cagacgagggagaacctgcagcaggctctggagagtctcaacatgaatggctgctctgtg
gaggacctgggcctggacttcaccctgcccggtttccccaacatcgagctgaagaagggg
ggcaaggacatccccgtcaccatttacaacctggaggagtacctcaggctggtggtctac
tggacgatgaacgaaggcgtgtcccggcaatttgagtctttcagggaagggttcgagtct
gtcttccctctgcatcacttgcagtatttctaccctgaagagttggatcagctgctttgt
ggcagcaagtccgagacctgggatgtcaagaccctgatggagtgctgtcgtcccgaccac
ggctacacgcatgacagtcgtgctgtgaggttcctgtttgatgtgctcagcagttttgac
gcagagcagcagagactcttcctgcagtttgtcacaggaagccccaggctgcctgttgga
ggtttccgtagtctgaacccaccgctgaccatcgtgcggaagacttttgagtcgacggag
aacccggacgacttcctgccgtcggttatgacctgcgtcaactacctgaagctgcccgac
tactccagcattgagatcatgcgcaagaaactgttgattgcggcccgcgagggccagcag
tccttccacctgtcctga
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