Coregonus clupeaformis (lake whitefish): 121567687
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Entry
121567687 CDS
T08357
Symbol
rnf40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B isoform X1
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121567687 (rnf40)
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121567687 (rnf40)
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
121567687 (rnf40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
zf-C3HC4
CC_Bre1
zf-C3HC4_2
BRE1
zf-C3HC4_3
Rab11-FIP3
zf-RING_5
zf-RING_2
zf-RING_UBOX
zf-rbx1
Ice_binding
Motif
Other DBs
NCBI-GeneID:
121567687
NCBI-ProteinID:
XP_041733838
LinkDB
All DBs
Position
1:35822133..35843105
Genome browser
AA seq
972 aa
AA seq
DB search
MMSGTGGGKRASGGDSPPGPPEKKCRKEEKTTTTLIEPIRIGGVSSTEEMDMKVIQFKNK
KLSERLEQRQTMEDELREKIEKLEKRQATDDTTLLIVNRYWSQLEENVHLLRQRIDPTVV
PAPPATPVSAPTPMEEDSMIPPPPPSAPLPAPEHEEQQPPPPDGMEIARNPQQDSTTAPL
PTTTLSESAKAFLSTLDNSSEEELSLQLQDRMQFSKEAAACMVCVFDRLHSRIDSLCTQI
LSTVFEDDSQEEMLRLNRTLLEENGRLRDLASSLQGRHHKMSMEYNELVDKVTSSETKVS
EMETAVEDLQWDIEKLRKREQKLNKHLAEALEQLTSGYYTTGSSGGLPGGQITLNIQKFE
SLNAELEQNQELANNRMANLEKQQQELQEAVRESEKLKLDLKNIPEDVVKETADYKCLQS
QFSLLYNESLGVKTQLDEARALLLTAKNAHLRQIEHMESDELSLQKKLRTEVIQLEDTLA
QVRKEYEMLRIEFEQNLAANEQAGPINREMRHLISSLQNHNHQLKGDVQRYKRKLRETQM
EINKLRCQSGDTGLLSLEEPVSDSLEVKKEEDEDQEEEEERRRELERQRARERERETGRE
RERERERERQRSEELKRKDSDTLKMLRAELKKAQESQKEMKLLLDMYKSAPKEQRDKVQL
MAAERKSKAEVDELRVRVRELEERERKESKKLADEDALRKIRVAEETIDHLQKKLTATKQ
EEEALLSEMDVTGQAFEDMQEQNSRLMQQLREKDDANFKLMSERIKSNQIYKLLREEKEE
LADQVLTFKTQVEAHLLVVQKLEEKEGILQSLLATLEKELGVRIQALELNKRKAVEAAQL
AEDLKVQLEHTQSKLREIQVSVSENRTARERELGNLKRAQEDLSRLRRKLEKQKKVEVYT
DADEILQEEINQYKAKLRCPCCNTRDKETVLTKCFHVFCYECLKTRYDTRQRKCPKCNCA
FGANDFHRIYIT
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgatgtctggcaccgggggagggaagcgagcctcaggtggggacagcccccctggtcca
ccagagaagaagtgtagaaaagaagagaagaccaccaccactctcattgagcccatacgc
attgggggagtgtcctctacggaggaaatggacatgaaggtgatccagtttaagaataaa
aagctgagtgagcgtctggagcagaggcagaccatggaggatgagctgcgagagaagata
gagaagctggaaaagcgacaagctactgacgataccacactgctcattgtgaatcgttac
tggtcccagttggaagaaaatgttcacttgctgcgccaacgcattgaccccacggtggtc
ccggcaccgcccgctacgcctgtctctgcccctaccccaatggaggaggatagtatgatc
ccaccaccccctccttcagccccactcccagcgccagaacacgaggagcaacagcctcca
ccacccgatggtatggagatagctcgtaatccacagcaggactcgacaaccgcaccgctg
cccactactaccctcagtgagagtgccaaagccttcctctccactttggacaacagcagt
gaggaggagctcagcctgcagctgcaggacaggatgcagttcagcaaggaggcagctgcc
tgcatggtctgcgtcttcgacaggctgcacagccgcatcgacagcctatgcacccagatc
ctgtccacagtgtttgaggatgacagccaggaagagatgctccgtctgaatcgtactctg
ctggaggagaatggcagactgcgagacctggcctcctccctgcagggcagacaccacaag
atgtctatggagtacaatgagcttgtggataaggtgacaagctcggagaccaaggtgtct
gagatggagaccgctgtggaggatctgcagtgggacatcgagaagctccgtaagagggaa
cagaagctcaacaagcatctggctgaggcactggagcagttgacctcgggctactacacc
actggcagctcaggggggctacccggtggccagatcaccctcaatatacagaagtttgag
agcctgaatgcagagttggagcagaaccaggagctggccaacaaccgcatggcgaacctg
gagaaacaacagcaggagctccaggaggctgtgagggagagtgagaagctcaagttggac
ctgaaaaatattccggaggatgtggtgaaggagaccgcggactacaagtgcctgcagtcc
cagttctccctgctctacaacgagtctctgggggtgaagacccagctggatgaggcccgg
gccctgctcctcaccgctaagaacgcccacctcagacagatagagcacatggagagtgac
gagttgtcactacagaagaagctccgcactgaggtcatccaactggaagacacgctggcc
caggtgcgcaaggagtacgagatgctgcgcatcgagtttgaacagaacctggcggccaac
gagcaagcaggcccaatcaacagagagatgcgccacctcatcagcagcctccagaaccac
aaccaccagctgaaaggtgacgtgcagcgctacaagcggaagctcagagaaacacagatg
gagatcaacaagttgcggtgtcagagtggtgacactgggcttctgtcgttggaggagccg
gtgagcgacagcctggaggtgaagaaagaggaggatgaagaccaagaggaggaggaggag
aggaggagggagctggagagacagcgggcccgggagagagagcgggagactgggagggaa
cgagagagggaacgagagagggagcgacagcgcagcgaggagttgaagaggaaagattcg
gacaccctgaagatgctgagggcggaacttaagaaagcccaggagtctcagaaggagatg
aagctactgttggacatgtacaaatcagctcccaaagaacagagggacaaagtgcagctt
atggcagcagagcgcaagtctaaagctgaggtggatgagttgcgggtgcgggttcgagag
ctggaggagagggagaggaaggagagcaagaagctggctgatgaggacgctcttaggaag
atccgtgtggcagaggagacaatcgaccacctacagaagaagctcactgccaccaaacag
gaggaggaggccctactgagtgagatggacgtgacaggtcaggcctttgaggacatgcag
gagcagaacagccggctgatgcagcagctgagggagaaggatgacgccaacttcaagctg
atgtcggaacgcatcaagtccaaccagatctacaagctgctgagggaggagaaggaggag
ctggccgaccaggtgctcaccttcaagacccaggtggaagcccacttattggttgtacag
aagctggaggagaaagagggcatcctccagagcttactggccactctggagaaagagtta
ggagttcgcatacaagcactagaactcaacaagaggaaggcggtggaggcagcccagctg
gctgaggacttgaaggtgcagctggaacacacccagtccaagctgagggagatccaggtg
tccgtgtccgagaaccgcacagccagagagagggagttgggcaacctcaaaagagcacag
gaggacctgtccaggctacgacgaaagctggagaaacagaagaaagtagaggtgtacact
gatgctgatgagatcctgcaggaggagatcaaccagtacaaggcgaagctgcgttgtccg
tgctgcaacacccgcgacaaagagacggtgctcaccaagtgcttccacgttttctgctac
gagtgtctgaagacgcgctatgacactcgtcaaaggaagtgccccaagtgcaactgtgcc
ttcggggccaacgacttccaccgcatctacatcacctaa
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