Coregonus clupeaformis (lake whitefish): 121567718
Help
Entry
121567718 CDS
T08357
Name
(RefSeq) eukaryotic translation initiation factor 4 gamma 1-like isoform X1
KO
K03260
translation initiation factor 4G
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121567718
03012 Translation factors [BR:
cclu03012
]
121567718
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121567718
mRNA cycle factors
Stress granule specific factors
121567718
Translation factors [BR:
cclu03012
]
Eukaryotic type
Initiation factors
eIF-4
121567718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
MA3
W2
DUF3689
Motif
Other DBs
NCBI-GeneID:
121567718
NCBI-ProteinID:
XP_041733883
LinkDB
All DBs
Position
6:20297545..20344515
Genome browser
AA seq
1743 aa
AA seq
DB search
MNKAPQPITGSPSVPHPASSPGLQLPTFPPGQPPSVVFATPPPQMNPAPQPRQGGFRSLQ
PYYSRPSNAPLVPPNSTPRTVAPTHVYQPGQQMMIIPSQQIPFPNQQGPAYFIPGQYRST
YVATPQQYPVPPGTPGFYPGTSPAEYAGAYFQAQQQYTSSVIMNPPPQQQQLPPQQQIHP
KRERKQIIIRDPNQGGKDITEEIMSGGTRSGATPTPPQVSDDSSESSISGSEGPAVAQAN
GENVTPGVVRPDDRGKPAATLITGPPAPSKTPELVKTAPAPTEVKPPDTDSNSPSLPQDL
PTPPPSTSPVADVMDAPAPAAAPSPSAPEVPAYPAPLPEPRPTPAAEEQPSAAKEAREEE
KEIKEEVAKAREEVTTSSKPEPSLAPVTTPSSSTNSVSATQPPRAEEEEPSALSITLPSP
QAAKPPLESPIAQPEELRLPNGLPLPSPQDPEKVSAESSECDVSPIAEPEVAHLQREAPV
PKPMPVAVTASPVAVTPTPVAVTPTPAPVAVTPTPVAVTPMPAPVAVTPMPAPVAVTPMP
APVAVTPMPAPVAVQVTVAPVVLAETATTTEVTPPRVEDQMDSPPPQSNTPAGESSMQAA
VSVPKKKRKMKDLNKKEAVGDLLDAFKEEQVVQSPPEPEQATPTSAADAEEPRPAATPAV
EEVDETWEEKEDKLDAENIEPKPGDLKYQYREELCRPIDPEEKKRYDRDFLLGFQFISAA
MSKPEGLPQISDVVLDKANKAPLRQLDPGRLPGMNMGTDFTPSFANLGRPGMGGGGGGGG
GGGGGGGGHRGGPPSGMGGGGPRRSQQGQRKEPRRIINISSSLTDDVKLNKAEKAWKPAV
KKATSGQAAPEEESDDPEQAKTQELFKRVRSILNKLTPQMFQQLMKQVTELTIDTEERLK
GVIDLIFEKAISEPNFSVAYANMCRCLMGLKVPTTDKPGVTVNFRKLLLNRCQKEFEKDK
DDDVIFEEKQKELDAAATEEKDRLKAELEEAKDKARRRSLGNIKFIGELFKLKMLTEAIM
HDCIVKLLKNHDEESLECLCRLLSTIGKDLDFEKAKPRMDQYFAQMDKIIKEKKTSSRIR
FMLQDVLDLRRNTWVPRRGEQGPKTIDQIHKEAELEEHREVLKVQQQLLNQNTRGGSGGR
GGGGGGGGGGGGRDQGNRGGQHPQAGQRSQPQDEGWNTVPISTKSRPIDTSRLSKITKPG
ALDFNNQLLAPQLGGKGMWGSWGKGSSGGTTGAKPAGEATPESGGRPATSTLNRFSALQP
QQPSQDSDRRLPQRNSSSRDRGSDRFERHDRGSNDRFDRRDDRDRNRPPVSKRSFSRETE
EHSREREHRGPADPVRRVASMTDDRDRGSRDRARSKENVKREAAPTPPPPQTKPALSEEE
LEKKSTAIIEEYLHINDMKEALQCVVEMNSTPLLFVFVRSGLESTLERSPIARERMGLLL
HQLYKAGTLPTEQYYRGLQEILEVAEDMAIDIPHIWLYLAELITPMLHEGGIPMGQLFKE
ISKPLVPQGTAGVLLVQVLTLLCKGMSHKKAGAMWREAGLSWKDFLPEDEDVNKFVTEKN
VEFTLGGGGDETEKSSKKELSSEELNKQLDRLIQDKADNQRIYDWVEANLDETQISSNVF
VRAVMTSICQSAIICENPSKLDAKVITQRAKLLHKYLKDEQKELQALYALQALMVEMEQP
ANLLRMFFDTLYDEDVIKEEAFYKWESSKDPAEMQGKGVALKSVTAFFTWLREAEDEESD
NNS
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagcaccacagcctataacaggatccccctctgtcccccacccagcgtcctcc
cccggactccaactacccactttccctcctggacagcccccatctgttgtctttgccacc
ccacctccacaaatgaacccagcgccacagccccgacagggaggattcaggtcactgcag
ccatactacagccggcccagcaatgcccccctggtgcccccgaacagcacgccgaggacc
gtggcacccacacacgtctaccagccaggccaacagatgatgataatcccctcacagcag
atccccttccccaaccaacaaggccccgcctacttcatacccggacagtaccggtcaacg
tacgtggccacccctcagcagtacccggtcccgccgggcaccccaggcttctacccaggc
accagcccagctgaatatgcaggggcatacttccaggcccaacagcagtacacatcctcc
gtcatcatgaaccctcccccccagcagcagcaactacctccacagcaacagatccatccc
aaaagggagcgcaaacagatcataatacgagaccctaaccagggtggtaaagacatcact
gaggagattatgtcagggggcacccgcagtggtgccacccccacacccccacaggtgagc
gacgactcttcagagtcatctatatctggatcagagggcccagccgttgcccaggccaac
ggtgagaacgtgacacctggcgtcgtcagaccagatgaccgagggaaacctgcagccact
ctcatcactggccccccagccccgtctaaaacccctgaactggtcaagactgcccctgcc
cctacagaggtcaaacccccagacacggacagtaactccccttccttaccccaggaccta
cccacccccccaccctcaactagtcccgttgcagacgtgatggacgcaccagccccggcc
gctgctccatccccatctgcccctgaagtgcccgcttaccctgcgcccctgcctgaaccc
cgccccactcctgcagccgaggagcagccctcagccgccaaggaggctcgggaggaggag
aaggagattaaagaggaggtggcgaaggctagggaggaggtgactacatcatccaaacct
gagccttcccttgctccagtgaccaccccaagcagcagcactaacagtgtgtctgccacc
cagcctccccgagccgaggaggaggagccatcagccctgtccatcaccttgccctccccc
caggcagcaaaacccccgctggagtctcccatcgcccagccagaggagctcaggctgccc
aacggcctgcctctccccagcccacaggaccctgagaaggtgtctgcagagtcgtcggag
tgtgacgtcagccccatcgctgagcctgaggtggcccacttacagagggaggcacccgtg
cctaaacccatgcctgttgccgtgacggcatcgcctgttgccgtgacgccaacgcccgtt
gccgtgacgccaacgcccgcccccgttgccgtgacgccaacgcccgttgccgtgacgcca
atgcccgcccccgttgccgtgacgccaatgcccgcccccgttgccgtgacgccaatgccc
gcccccgttgccgtgacaccaatgcccgcccctgttgccgtccaggtgactgttgccccc
gtggtcctagctgagactgctactactacagaggtaacccctccccgtgtggaagaccag
atggactctccaccaccacagagcaacaccccagccggggagagttctatgcaagctgct
gtttctgtgccgaagaaaaagaggaagatgaaggatctgaacaagaaggaggctgttgga
gacctcctggatgcctttaaggaggagcaggtagtgcagagcccgcctgagccagagcag
gccacacccacttctgccgctgacgctgaggagccccgcccagccgccacccctgcagtc
gaagaggtggatgagacgtgggaggagaaggaagacaaactggatgcagagaacattgaa
cccaagcccggggatctgaagtaccagtacagagaggaactatgtaggcctatagaccca
gaggagaagaagaggtatgacagggacttcctgctgggcttccagttcatcagtgccgcc
atgtccaagcctgagggcctgcctcagatcagtgatgtcgtgctggacaaggcgaataag
gcccctctccgccagttggaccccggccgtttgccggggatgaacatgggcactgacttc
acgccctcgtttgccaacctgggcaggcctggaatgggagggggaggaggaggaggaggt
ggtggaggaggaggaggaggtggccacagaggaggaccaccctctggtatgggtggtgga
ggaccacgtcgctcccagcagggccagcgtaaggaacccaggaggatcatcaacatctct
tcgtctctgacggacgacgtgaagctcaataaggctgagaaggcctggaagcccgccgtc
aagaaggctaccagtgggcaagctgctcctgaggaggagagcgacgacccagaacaggcc
aagacccaggagctgttcaagagggtccgtagtatcctgaacaagctgacccctcagatg
ttccaacagctgatgaagcaggtcacagagctgaccatcgatacggaggagaggctgaag
ggagtgatagatctgatctttgagaaggccatctctgaacccaacttctccgtggcctac
gccaacatgtgccgctgccttatggggctcaaagtccccactacagacaagccgggagtc
actgtgaatttccgcaagctgcttctgaaccgctgtcagaaggagtttgagaaggacaag
gacgatgatgtcatctttgaggagaagcagaaagagctggacgctgcagccacggaggag
aaggatcgactgaaggcggagctggaggaggccaaagacaaggcacggcggaggtcgcta
ggcaacatcaagttcatcggtgagctgttcaagctgaagatgctgacggaggccatcatg
cacgactgcatcgtcaagctgctgaagaaccacgatgaggagtcgctagagtgcctctgt
agactcttgtccactatagggaaggacctggactttgagaaggcaaagcctcgtatggac
cagtactttgcccagatggacaagatcatcaaggagaagaagacatcgtccagaatccgc
ttcatgctgcaggacgtactggacctcaggaggaacacgtgggtccccaggagaggagag
cagggccccaagaccatagaccagatccacaaggaggctgagctggaggagcacagggag
gttctcaaggtgcagcaacaactcctcaaccagaacacccgaggaggaagtggaggacgt
ggtggaggaggaggaggaggaggaggaggaggaggaagagatcaggggaaccgcgggggc
caacacccccaggcgggccagaggagtcagcctcaggatgagggctggaacacagttccc
atctccaccaagagcagacccatcgacaccagccgactcagcaagatcactaagcctggg
gctttggacttcaacaaccagctgctggcgccccagctcgggggcaagggcatgtggggc
agctggggtaagggtagcagtggaggcaccaccggagccaaacccgctggggaagccacc
ccagagtcaggaggccgcccagccaccagcaccctcaacaggttctcagccctgcagcca
cagcagccctcacaggactcggacagaagacttcctcagaggaacagctcgagccgggac
cgtggcagcgacagatttgagcgtcatgaccgtggcagcaacgaccgcttcgaccggcgg
gacgaccgggacaggaaccggcccccggtcagcaagcggagctttagcagggagacagag
gagcacagcagagagagggagcaccgtggccctgctgatcccgtacgccgcgtagccagc
atgaccgacgacagggaccggggcagcagagaccgagctaggagcaaagagaatgtgaag
agggaagctgctccaaccccccctcctccccagaccaaacctgccttgagtgaagaagag
ctggagaagaagtccacagctatcatagaggagtacctacacatcaatgacatgaaggag
gcgctgcagtgtgtagtggagatgaacagcaccccgctgctctttgtgtttgtacggagc
ggtctggagtccactctggagcgcagccccatcgccagagaacgcatgggcctgctgctg
caccagctgtacaaggcaggcaccctgcccacagagcagtactacagagggcttcaggag
atactggaggtggcagaggacatggctatagacatcccacatatctggctctacctggct
gagctcatcacccctatgctccacgaaggaggcatccccatgggacagctcttcaaagag
atatccaagcccctggttcctcaggggacggctggagttctgctggtccaggtccttacc
ctactctgcaaaggaatgagccataaaaaggcaggcgccatgtggagggaggcggggctt
agctggaaagactttctgcctgaggacgaggatgtcaacaagtttgtgacagaaaagaat
gtggagttcaccctgggaggaggaggtgatgagacggagaagagcagtaagaaggagctg
agctcagaggagctgaacaaacagctggacaggctcatacaggacaaggctgacaaccag
aggatctacgattgggtcgaggctaacctggacgagacacagatatcctccaacgtgttt
gtcagagcagtcatgacatccatctgccagtcggccatcatctgtgaaaacccttccaag
ttggatgcgaaggtgatcacccagagggccaagctgctccacaagtacctgaaggatgag
cagaaggagctgcaggccctctacgccctgcaggccctcatggtggagatggagcaacct
gccaacctgctgcggatgttctttgacacgctgtacgacgaggacgtgatcaaagaggag
gccttctacaagtgggagtcaagcaaggacccagctgagatgcagggcaagggtgtggcc
ctgaagtccgtcactgccttcttcacctggctccgtgaggccgaggacgaggagtctgac
aacaacagctag
DBGET
integrated database retrieval system
