Coregonus clupeaformis (lake whitefish): 121567760
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Entry
121567760 CDS
T08357
Name
(RefSeq) tsukushi
KO
K08130
tsukushi
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cclu00535
]
121567760
Proteoglycans [BR:
cclu00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class IV
121567760
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GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_1
LRR_5
LRR_14
LRR_EndoS
LRR_9
LRR_RPS2
LRRNT
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
121567760
NCBI-ProteinID:
XP_041733949
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Position
6
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AA seq
352 aa
AA seq
DB search
MMAFLLCVSLWMLLAVHGQAGAVKNCHPGCHCEVESFGLFDSFSLTRVDCRGVGPSTSPI
SIPLDTAHLDLSSNSMSLLTDTMLSGPGYTTLISLDLSNNRISMVSPKALSRLRYLESLD
LSHNSLEGLDKGCFSGLPLAEVDLSHNRFQEFDLDMFITKGHGEPISVDLSHNRLTVISR
SSSRSPLLHVQSLTLAANQLTAVPKLKGIPLRDLSLDGNSISRIEEGAFEDLKDLVHLSL
SGLPELSDIQPNRFRGLQSLQVLDLSNNAKLKTLNPAVFSGLVSLQELNLSNSGVTSLPN
NMLSHLPSIKSITLGQNINCWRTQKQGQFHRQLGQEQNHDEVLTCDVEGIVL
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgttcctcctgtgtgttagcctgtggatgctcctggctgtccatggccaggct
ggagctgtgaagaactgccacccgggttgccactgtgaggtggagagcttcggcctgttc
gacagcttcagcctgaccagggtagactgcaggggagtgggccccagcaccagccccatc
tccatccccctggacactgcccacctggacctgtcctccaactccatgtccctgctgacc
gacaccatgctctctgggcctggctataccaccttgatcagcctggacctcagcaacaac
cgcatctccatggtcagcccaaaggccctgtccaggctgcgctacctggagtctctggac
ctcagccacaactccctggagggcctggacaagggctgcttctctggcctccccctggcc
gaggtggacctcagccacaaccgcttccaggagtttgacctggacatgttcatcactaaa
ggtcacggagagccaatcagcgtggatctgtctcacaaccggctgacggtgatctccagg
agttcctctaggagccccttgctacatgtccagagcctgactctagcagccaaccagctg
acggccgtgcccaagctaaaaggcatcccgctgagggacctaagcctggatgggaacagc
atctcccgcattgaggagggggcctttgaggacctcaaggacctggttcacctgtccctc
agtggacttcctgagctctctgacatccagcctaaccgtttcagaggtctacagagcctt
caggtcttggacctgtccaacaacgccaagctaaagacactgaacccagctgtgttcagt
ggacttgtgtctctacaggagctcaatctgtccaactctggagtaacgtcattgccaaat
aacatgctaagtcacttgccaagcatcaagagtattaccctgggccagaatatcaattgt
tggaggactcaaaagcagggccagtttcacaggcagcttggacaggaacagaaccatgac
gaggtgctgacctgtgatgttgaagggattgtcttgtga
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