Coregonus clupeaformis (lake whitefish): 121567786
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Entry
121567786 CDS
T08357
Name
(RefSeq) roundabout homolog 1-like
KO
K06753
roundabout, axon guidance receptor 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121567786
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
ROBO family
121567786
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Motif
Pfam:
I-set
Ig_3
ig
Ig_2
V-set
fn3
C2-set_2
Ig_5
Ig_DSCAM-DSCAML_C
Ig_C17orf99
Pur_ac_phosph_N
BiPBP_C
fn3_2
VID27_N
Motif
Other DBs
NCBI-GeneID:
121567786
NCBI-ProteinID:
XP_041733998
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Position
6:complement(16342138..16755285)
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AA seq
900 aa
AA seq
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MRVTWSGATPFVIVALLRLVQSQLLEGSLVPDTGAATQDGASEGATPAPTSEHEDDNSLG
YTGSRLRQEDSPPRIVEHPSDLIVSKGEPATLNCKAEGRPSPTVEWYKDGERVETDRDNP
RSQRMLLPSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAVSHNASLEVALLRDDFRQN
PADVMVAAGEPAVLECMPPRGHPEPSISWKKDGANIDDRDERITIRGGKLMITNARKSDA
GKYVCVGTNMVGERESEIAELTVLERPSFVKRPGSQVVLVDQSVEFRCEARGDPVPTVRW
RKEDGDLPKGRYEIREDHTLKIRRLTSADVGSYTCVAENMVGKAEASATLTVHVVSVPPV
FVVRPRNQVVAVGRTVTFQCEATGNPQPAIFWQREGSQNLLFSYQPPQPSSRVSVSQTGD
LTITDAERSDMGYYSCQALNIAGSVITKALLEVTDVVSDRPPPVVRQGPTNQTVSVDGTV
VLSCLATGNPTPTILWRKDGVLVSTHDSRVKQLDTGALQIRYAKLGDTGMYTCIASTPSG
EASWKAYLEVQEFGVPVQPARPTDPNLIPSAPSKPEVTDVTRTSVTLSWKPNVTGATPTS
YIIEAFSHASGSSWQTLAEHVKTESYVLKGLKASAVYLFLVRAANAYGLSDPSPITDTVK
TQDIPPTSQGVDHRQIQRELGEVVIHLHNPTILSSSSVRVQWTVEQQSQYIQGYKVMYRA
SPEGQQRSDWAVFEVRTPGEDSTVVPQLRKGVTYEFKVRPFFNEFQGTDSEVKIAKTLEE
APSAAPRGVTITESGDNGTAIVVSWQPPPEEEQNGLVQEYKIWCLGNESRYHINRTVDGS
TFSLLIPSLAPGIRYSVEVAASTGAGPGVKSDVTFFQIDSSGLYDGGCGGLREHSVPADQ
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgtcacatggtcaggtgccacgcccttcgtcattgttgccctgctcaggcttgtc
caatcacagctgctggagggatctctggttccagacacaggcgctgccactcaggatggg
gccagtgaaggggccacgccggcccccacctcagaacacgaggatgacaactccctgggc
tacacaggatctcgtctgcgccaggaggactccccaccccggatcgtggagcacccctct
gacctgatcgtgtccaagggggagccggccaccctcaactgcaaggcggaggggaggccc
agccccacggtggagtggtacaaggacggggagcgggtggaaacggaccgggacaaccct
cgatctcaacgcatgctgctgcccagcggctccctcttcttcctacgtattgtccacgga
cgacgctccaaaccggatgagggctcctacgtttgcgtcgcccgcaactacctgggagaa
gccgtcagccacaacgcctcgctggaagtagcattactacgcgatgacttcagacagaac
cctgccgatgtgatggtggcagcgggcgagcctgcagtcctagagtgtatgccccctcgc
gggcatcctgaacctagcatatcctggaagaaggacggtgccaacatcgatgacagagat
gaacgaatcactatccggggaggaaagctgatgataaccaatgccagaaaaagcgacgct
gggaagtatgtgtgtgtcgggaccaacatggtgggagagagggagagcgagatcgctgag
ctcactgtgctcgagcgacccagctttgtgaagcgtcccggcagccaggtggtgctggtg
gaccagagtgtggagttcaggtgtgaggcccggggtgacccagttcccaccgtccgctgg
aggaaagaggacggagacctgcccaagggaagatatgagatccgagaggaccacaccctg
aagatccgtcgtctgacctctgcagacgtgggttcttacacctgcgtggcagagaacatg
gtgggcaaggcggaggcatcagccaccctcaccgtccacgtcgtgtctgtgccccctgtg
tttgtggtgcggcccaggaaccaggtggtggcggtggggaggactgtcaccttccagtgt
gaggccacaggaaacccccaacctgctatcttctggcagagagagggcagccagaacctg
ctcttctcctaccagcccccccagccgtctagccgcgtctccgtctcccagacgggggac
ctgactatcacagatgcagagcgctcagacatgggctactacagctgccaggccctcaac
atcgctggctctgtcatcaccaaggccctgctggaggtcactgacgttgtgtcggatcgc
ccacctccagttgtccgccagggtccgaccaatcagacagtgtctgtggacgggacggtg
gtcctgagttgcctagcaacgggcaaccccacccccaccatcctgtggaggaaggacgga
gtgttggtgtccactcacgactctcgggtcaaacagctggacacgggcgcactgcagatc
cgctacgccaagctgggtgacacaggcatgtacacatgcatcgcctccactcccagtggc
gaggcctcgtggaaggcctacctggaggttcaagagtttggtgttccagtgcagccggcc
agacccactgaccccaacctgatccccagcgccccctccaaacctgaggtcactgacgtc
actcgcacctctgtcaccctgtcctggaagcccaacgtcacaggagccacacccacctcc
tacatcatagaggccttcagtcatgcgtcaggcagcagctggcagaccctggcagaacat
gtgaagactgagtcgtatgtgttgaagggcctgaaggccagtgctgtctacctgttcctg
gtccgagctgctaatgcctacggcctgagtgaccccagccccataactgacaccgtcaaa
acacaagatatcccccccaccagtcagggagtggaccaccgtcagatccagagggagtta
ggagaggtggtcatccaccttcacaaccccaccatcctctcctcctcctccgtcagagtg
cagtggacggtggagcagcagtctcagtacatccagggttataaggtgatgtacagggcc
tctccagaggggcagcagaggagtgactgggctgtgtttgaggtgagaaccccaggggag
gacagcactgtggtgccccagctcaggaaaggagtcacctacgagttcaaagttcgcccc
ttcttcaacgagttccagggaacagacagtgaggtcaagatagccaagactctggaggaa
gctcccagtgcagcccctcgtggggttaccatcacagagagtggggacaatgggaccgcc
atcgtggtctcttggcaaccgcctccagaggaggagcagaacgggttagtccaggagtac
aagatctggtgtttgggtaatgagagcaggtaccatatcaaccgtacggtggacggctct
accttctccttgctgatccccagcctggctccagggatccgttacagtgtggaggtcgca
gccagcactggggcaggcccaggggtcaagtctgatgtcaccttcttccagatagactca
tcggggctgtatgacggagggtgtggtggactcagagaacactctgtcccagcagatcag
tga
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