Coregonus clupeaformis (lake whitefish): 121567905
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Entry
121567905 CDS
T08357
Name
(RefSeq) vacuolar protein sorting-associated protein 53 homolog isoform X1
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121567905
Membrane trafficking [BR:
cclu04131
]
Protein recycling
Others
EARP complex
121567905
Endosome - Golgi transport
Tethering complex
GARP complex
121567905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
Vps54_N
COG4_N
FBF1
GrpE
hAT-like_RNase-H
PsaD
Laminin_II
NBD94
VPS51_Exo84_N
Motif
Other DBs
NCBI-GeneID:
121567905
NCBI-ProteinID:
XP_041734206
LinkDB
All DBs
Position
6:complement(38943236..38977533)
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AA seq
831 aa
AA seq
DB search
MMMEEEEFEFAEDLEAILHLTPEVQLAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLA
NIDDVVNKIRLKIRRLDDNIRTVVRGQTNVGQDGRQALEEAQVAIGQLFGKIKDIKDKAE
KSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRKRQYGEVANLLQ
GVVNVLEHFHKYMGIPQIRQLSERVKAAQSELGTQILADFEEAFPTQGSKRAGGPSNVLR
DACLVANVLDPRIKQEIIKKFIRQHLSEYMVLFQENQDVAWLDKIDRRYAWIKRQLVDYE
EKYGRMFPEEWCMTERIAVEFCHITRTELAKVMRTRAKEIEVKLLLFAIQRTTNFEGLLA
KRFSGCTLTDWSGVKKPETPLESTNPFLEDEVGEDVSEMEEDLDRPKKHKAPDNPFHGII
SKCFEPHLYVYIESQDKNLGEMIDRFVSDFRAQGPPKAGTEDGGAVLPSCADLFVYYKKC
MVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTSSNSGGLTIKSLLQEKEGSEA
AKFTVEELCLICSILSTAEYCLATTQQLEEKLKEKVDKTLVERINLTGEMDTFSNVISNS
IQLLVQDLDAACDPALTAMSKMPWQSVEHVGDQSPYVTSVIMHIKQNVPIIRDNLASTRK
YFTQFCIKFTNSFIPKFINHLFRCKPISMVGAEQLLLDTHSLKTVLLDLPSIGSQVVRKA
PASYTKIVVKGMTRAEMILKVVMAPHEPAVVFVDNYIKLLADGNPETFQKTLDMKGLKRS
EQSSMLELFRQRLPTPPSGADGGPSLSFSTPTPEQENSRIRKLEKLIKKRL
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggaggaggaagaatttgaatttgcggaggatttggaggctattttgcacctt
actccagaggtgcagttggccatcgaacaggttttccccagtcaagacccattggacaga
gcagattttaatgctgtggaatacatcaatacattgtttcccactgagcagtcactggct
aatatagatgatgtggtcaacaagatccgtctgaagattcggcgtctggatgacaacatc
aggacggtggtgagaggccagaccaacgtgggccaggatggcagacaggcactggaggag
gcccaggtagccatcggccagctctttggcaaaatcaaagacattaaggacaaggctgag
aaatctgagcaaatggtcaaggagataacgcgggacatcaaacagctggaccatgctaag
cgtcacctgaccacctccatcaccaccctcaaccacctgcacatgctggctgggggcgtg
gactctctagaggccatgacgaggaagaggcagtatggagaggtggctaacctgctacag
ggggtggtcaacgtgctggaacacttccacaaatacatgggcatccctcagatcagacag
ctctcagagagggtgaaagcggcccaaagcgagctggggactcagatcctggcagacttc
gaagaggccttccccacacaggggtcaaagagagcagggggacccagtaatgttctgagg
gatgcctgtctggtggccaacgtcttggaccctcgcatcaaacaggagatcatcaagaag
ttcatcagacagcacctctctgagtacatggtgctcttccaggagaaccaggatgtagct
tggctggataagattgaccggcgctacgcctggattaagcgtcagctagtggattatgag
gagaagtacggacgcatgttccctgaagagtggtgtatgaccgaacgcatcgctgtggag
ttctgccacatcaccaggacggagctggccaaagtgatgcggacgcgggccaaagagatt
gaggtcaagcttcttctgtttgccattcagaggaccaccaacttcgaggggctgctcgcc
aagcgcttctctgggtgcacccttaccgactggtccggggtgaagaagcctgagacacca
ctggagtccaccaaccctttcctggaggatgaggttggagaagacgtttcagagatggag
gaggatctggataggcccaagaagcacaaggctcctgacaaccccttccatggcatcatt
tccaagtgcttcgagcctcacctctatgtctacatcgagtctcaggacaagaacctgggg
gagatgattgaccgtttcgtgtcagacttccgggcgcagggcccccccaaggcgggcacg
gaggacggtggagcggtgctgcccagctgtgctgacctgtttgtctactataagaagtgc
atggtgcagtgctctcagctcagcacaggggaacctatgattgccctcaccaccatcttc
cagaagtacctcagagagtatgcctggaagatactgtctggaaacctgcccaagactagc
agtaatagtggaggactgaccatcaagagtctgctgcaggagaaggagggttcagaggct
gcgaagttcactgtagaggagctgtgtctcatctgtagcatcctcagtactgcagagtac
tgtctggccaccacacagcagttggaggagaagctgaaggagaaggtggataagaccctg
gtggagagaatcaacctgactggagagatggacaccttcagcaatgtgatctccaacagc
atccagttgcttgttcaggacctggatgctgcctgtgacccagctctcactgccatgagc
aagatgccatggcagagtgtagagcatgtaggtgaccagagtccctacgtgacgtcagtc
atcatgcacatcaaacagaatgtccccatcatcagagataacctggcctccacacgaaaa
tacttcacccagttttgcatcaagttcaccaactcgtttattcctaaattcatcaaccac
ctgttcaggtgtaagcctatcagcatggtgggggctgaacagcttctcctggacacccac
tccctgaagacggtgttgttggatctgccctctatagggtctcaggtggtccgcaaggcc
ccagccagctacaccaagatagttgtgaaggggatgacccgcgctgagatgatcctcaag
gtggtcatggccccccatgaacccgccgtggtttttgtggataactacatcaagctcctt
gctgatgggaacccagagaccttccagaaaactctggatatgaaggggttgaagcgcagt
gagcagagcagcatgttggagctcttcagacagaggttacccactccaccatcaggggcc
gacggaggcccctctctctccttcagcacccccacccccgagcaggagaactcgcgcata
cgcaaactggagaagctcatcaagaagagactctga
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