Coregonus clupeaformis (lake whitefish): 121567945
Help
Entry
121567945 CDS
T08357
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121567945
03036 Chromosome and associated proteins [BR:
cclu03036
]
121567945
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
121567945
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
121567945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
Spt6_S1
SPT6_acidic
HHH_3
S1
S1_RRP5
HHH_9
SH2
Tex_N
Tex_YqgF
oligo_HPY
Motif
Other DBs
NCBI-GeneID:
121567945
NCBI-ProteinID:
XP_041734278
LinkDB
All DBs
Position
6:40686297..40719635
Genome browser
AA seq
1725 aa
AA seq
DB search
MDFIASEAEESEEEFGSTAYEEEEEENTEDQDDDGNLRGLIDDGVDEGEGEEEEEKEGKR
DKEGDSDSGEEIGHHKRKRSFDDRLDDDDIDLIEENLGVKVKRQKFRRLRDMSDDEDEEG
DDDVREAHEKNMIADEIFMGTGADEGEALDVPLHPGEDEEEDDEESDIDDFIVDDDGQPL
KKPKWRKKLPGYTDAALQEAQEIFGGDFDFAEFDTEAYENAEEEEDADEESWDRPKKQAK
KRVGRRSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSTCVKPAEDDELEQEAEWI
YRNAFSTLTISMQENTDYLDRGPTTTFSRKGPSTIQKIKEALNFMRNQHFEVPFIAFYRK
EYVEPELNINDLWKVWQWDEKWTQLKTRKQNLRRLFQKMQGYQFEQISADPDKPLSDGIR
PLDTSDLERLKDVQSSDELSDVYNHFLLYYGRDIPKMQNAARSSKKKLKKIKEVDEDGNE
QEVEEEEEEEEEQPKGPDLKLASRRDMYSICQGAGLDGLAKKFGLTPEQFGENLRDSYQR
HETEQFPAEPMELAKDYICSQFNTAEAVLEGTRYMVAMQIAREPLVRHVLRQTFQERAKI
NIKPTKKGKKDVDEAHYGYSFKYLKNKPVKELNGDQFLKMLQAEEEGLLTINICIDLIGV
KGYGGDHAYYEEIKQFYYRDEFSHQVQEWNRQRTLAIERSLKQFLYPQMAKELKNKLIAE
AKENVIKACSRKLYNWLKVAPYRPDQQVEEDEELMSEAQGKGIRVLGVAFSSSRDTPVFC
ALVNCDGEVGDFLRLPYFLKRRNAWREDEREKKIHDIETLKTFLNGKKPHIIAIAGENRD
AQMVIEDIKRTASELEQESSFPTIGVELVDNELAMLYMNSKKSEADFRDYPPLLRQAVSV
ARKIQDPLVEYAQVCSSDEDILCLKLHPLQEHVLKEDLLNALYCEFINRVNEVGVDVNRA
MAHPYTQSLLQYVCGLGPRKGSHLLRILKQNNTRLENRTQLVTMCHMGPKVFINCAGFIK
IDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENP
ERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRSTYRGPNTEEIFNLLTKE
TPETFYIGKLITSVVTSIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHF
DSGSCPGQAIGVRCRMDNGVTGFIPTKFLSDKVVKHPEERVKVGMTVHCRIMKIDIEKLS
VDLTCRTSDLSDKNNDWKLPKDTYYDFDTETEDVKQEEEAKKKQQRTTYIKRVIAHPSFH
NINFKQAEKMMESMDQGDVIIRPSSKGENHLTVTWKVADCIYQHIDVREEGKENAFSLGH
TLWINTEEFEDLDEITARYVQPMAAFARDLLGHKYFQECSGGDRKKMEEVLVKSKKEKPT
FIPYYVSACRELPGKFLLGYQPRGKPRVEFVTVTPEGFRYRGQVFPTVNGLFRWFKDHFQ
EPVAGITPSSSSRTRTPASINATPANINIADLTRAVNALPQNMTSQMFSAIAAVTGQGQN
PNTTPAGWASSQYGYTGGSSGGGGSSGPYHVFTTPAQQPIATPLLTPSYSYTTPTPSQQQ
TITTPQYPSTTPQSSHGSHGHGHRPSSSTPSSSSSCHHRTPTPKATSHTAVDWGKMAEQW
LQEKEAERKKTRSRMTPRPSPSPMIESTPMSLAGDATPLLDEMDR
NT seq
5178 nt
NT seq
+upstream
nt +downstream
nt
atggatttcatcgcgagtgaagcagaggagtctgaggaggaatttgggagtacagcatat
gaggaggaggaagaggagaatacagaggaccaagatgatgatggaaacctccgtggtctg
attgatgatggtgtggatgaaggggagggagaggaagaggaggagaaggaagggaagaga
gataaagaaggagatagtgactctggggaggaaattggacaccataagaggaagagaagc
tttgacgaccgcttggatgatgatgatattgatctcattgaggagaatttgggagtaaaa
gtgaaaaggcaaaagttccgtcgtttgcgagacatgtcggacgatgaggatgaggaggga
gatgacgacgtcagggaggcccatgagaagaacatgatagcggatgagatcttcatgggg
acaggagcggatgagggcgaggcattggatgtgcctttgcatcccggggaggatgaggag
gaggacgatgaagagtctgatatcgatgactttattgtggatgatgacggacagcccttg
aagaaacccaagtggaggaagaagctgcctggatatacagatgcagcccttcaggaggcc
caggagatattcggaggggactttgactttgccgagtttgacactgaagcctatgaaaat
gcagaggaggaggaggatgcagatgaagagtcatgggaccggcccaagaagcaagccaag
aagagggtgggccgacgcagtatctttgagatctatgagcccagcgagctggagagcagt
cacatgacggaccaggacaatgagatccgctccactgacatgccagagaggttccagttg
cgctccacttgtgtgaagcctgcagaggatgatgagctggaacaggaggctgagtggatc
tataggaatgccttctctactctcaccatatccatgcaggagaacacagactatttggac
agaggtccaaccactaccttcagcagaaaaggccccagcaccatccagaagataaaagag
gctttgaatttcatgagaaaccaacactttgaggttccgttcatagcgttctacaggaaa
gagtatgtggagcctgaactcaatatcaatgatctgtggaaggtttggcagtgggatgag
aagtggacccagctgaaaacccgcaaacagaacctgagacgcttgttccagaagatgcag
ggataccagtttgaacagatctcagcagacccagataagccactgtctgatggcattcga
ccactagacacttcagatttagagaggctgaaggatgtccagtctagtgatgaactgagc
gacgtctacaaccatttcctgctgtactatggccgggatattccaaagatgcagaatgca
gccaggtccagcaagaagaagctgaagaagatcaaagaagtggatgaagatggtaatgag
caggaagtagaggaggaggaagaggaagaagaggagcagccgaaggggccggacctgaag
cttgcatctcgcagggatatgtacagcatctgccagggtgcaggactggatggcctggcc
aagaagtttggtctgactccagagcagtttggagagaacctacgtgacagttaccagcgt
cacgagacagagcagtttcctgctgagccaatggagctggctaaggactacatctgcagc
cagttcaatacagcggaggcagtactggaggggactcgctacatggtggccatgcagatc
gctcgggagcctctagtcagacatgtgctccgacagacgttccaggagagagccaagatc
aacatcaaacccaccaagaagggaaagaaggatgtggatgaggcccattatggctactcc
tttaaatacctgaaaaacaagcctgtaaaggagctgaatggagaccagttcctcaagatg
ttgcaggcagaggaagagggcctgctcaccataaacatctgtattgacctgattggcgtg
aaggggtacggaggtgaccatgcgtactatgaagagataaagcagttttactacagagac
gagttcagccaccaggttcaggagtggaacagacagcgcactctggccattgaacgctcc
ctcaaacagttcctttacccgcagatggcaaaagagctgaagaacaagcttattgcagaa
gcaaaggagaacgtcatcaaggcctgcagcaggaagctgtataactggctaaaggtggcg
ccctatcggcccgaccaacaagtggaggaggacgaggagctcatgtctgaggcccagggc
aaagggatccgcgtgctgggagtggccttctcatccagcagagacaccccagtgttctgt
gccctggtgaactgtgacggagaggtgggggatttcctcaggcttccttacttcctgaag
aggaggaacgcatggagggaggatgaaagggagaaaaagatccacgatattgaaaccctg
aagacgtttctgaatggcaagaagcctcacatcatcgctatagctggggagaacagggac
gcccagatggtgattgaggacattaaacgcactgccagtgagctggagcaggagtcctcc
ttccccaccatcggggtggagctggttgacaatgaactggccatgctctacatgaacagc
aagaagtcagaggcagatttccgggactacccccctctcctgagacaggctgtgtctgtg
gccaggaagatccaggaccccctggtggagtacgctcaggtgtgcagcagtgacgaggac
atcctctgcctcaagttgcaccctttgcaggagcatgtattgaaggaggacctgctgaat
gctctgtactgtgagttcatcaaccgggtgaatgaagtgggtgtggatgtgaaccgggcc
atggcccacccctacacccagagcctgttgcagtacgtctgtggcttggggcccaggaag
ggatcccacctgctcaggatcctgaagcaaaataatactcgtctggagaaccgcactcag
ctggtcaccatgtgtcacatgggccccaaggtcttcatcaactgtgctggtttcatcaag
attgacacagcttctctgggagatagtactgactcctatattgaggttctggatgggtcg
cgggtgcacccagagacctacgagtgggccaggaagatggccgtggacgctctggagtac
gatgagtcagcggaggacgccaacccggccggggcactggaggagatcctggaaaacccg
gagcggctcaaagacctggacttggatgccttcgctgaggagctggaaagacagggttat
ggtaacaagggcatcaccctgtatgacatccgtgctgagctgagctgccggtacaaagac
ctgaggtccacctacagaggacctaacacagaggagatcttcaacctgctcaccaaggag
acaccagagaccttctacatcggtaaacttatcaccagtgtggtgacaagcattgctcac
cggcgcccccagggggagagttatgaccaggccataaggaatgatgagacaggtctgtgg
cagtgtcctttctgtcaacaggacaacttccctgagctcagcgaggtgtggaatcatttt
gacagtggctcctgccctggccaagctattggggtccgctgtcgcatggacaacggagtc
accggctttatccccaccaagttcctcagtgacaaagtggtcaagcaccctgaagaaagg
gttaaggtgggcatgacagtgcactgcaggatcatgaagattgacattgagaagctcagt
gtggatctgacctgtcggacgtcagacctgtcagataagaacaatgactggaagcttccc
aaggacacatactacgactttgacactgagacagaggatgtgaagcaggaggaggaggcc
aagaagaaacagcagagaacaacctacatcaagagggtgatagcccacccatcgttccat
aacatcaacttcaagcaggcagagaagatgatggagtccatggaccagggagatgtgatc
atcaggcccagcagtaagggagagaaccacctgactgttacttggaaggttgctgattgc
atctaccagcacattgatgtacgagaggagggcaaggagaacgccttcagcctgggacat
accctgtggatcaacactgaggaatttgaagatctggatgaaatcacagccagatacgtt
caaccaatggctgcatttgctcgcgatctgcttggtcacaagtattttcaagaatgcagt
ggtggagaccgaaagaaaatggaggaggtcttggtgaaaagcaagaaggagaagcctaca
ttcatcccctactatgtgtctgcctgtagagagctgccagggaagtttctgctcggttac
cagccccgcggaaagccaagggttgagtttgtgactgtcacgcctgaggggttcagatac
agaggccaggtttttcccacagtcaatggacttttccgctggttcaaagaccatttccag
gagccagtggcagggattactcccagcagcagcagtagaacacgtaccccagcctctatc
aatgccactccagccaatattaacattgcagatctgactcgtgcagtgaacgccctccct
cagaacatgacctctcagatgttcagtgccattgccgcggtaacaggccagggccagaac
cccaacaccacacctgccgggtgggcatccagccagtacggctacactggtggcagcagc
ggcggagggggcagcagcggcccctatcacgtgtttaccacaccagctcagcagcccatt
gctactccccttctgacgcccagctattcgtacaccacccccacccccagccagcagcag
actatcaccacgccccagtaccccagcaccactccccagtcctcacacggatcacacgga
catggacaccgcccttcctcctccacaccatcatcatcctcttcctgccaccacaggaca
ccaacaccaaaggcaacttcccacacagcggtggactggggcaagatggcagagcagtgg
ctccaggagaaagaggcagagcgcaagaagaccaggtccagaatgaccccacgaccttct
cccagccccatgatcgagagcacgcccatgtccctcgctggagacgccacaccgctgctg
gatgagatggatcgctag
DBGET
integrated database retrieval system
