Coregonus clupeaformis (lake whitefish): 121567956
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Entry
121567956 CDS
T08357
Name
(RefSeq) hepatocyte nuclear factor 1-beta-A isoform X1
KO
K08034
transcription factor 2, hepatocyte nuclear factor 1-beta
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121567956
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
121567956
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Motif
Pfam:
HNF-1B_C
HNF-1_N
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
121567956
NCBI-ProteinID:
XP_041734303
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Position
6:complement(41092581..41114855)
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AA seq
580 aa
AA seq
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MFSKMVSKLTSLQQELLSALLDSGVTKDVLIQALDDMDPSPNGFGVKLENLQMSPPSSKI
NRNDSDSKPVFLTLSNGHGKGKLSGDEGSEDGDDFDTPPILKELQSLNTEEAAEQRAEVD
RILAEDPWRAARMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTW
YVRKQREVLRQFNQAVQGSGSNMTDKGSQDQVLFFFPEFNPPGQGMGQQGEEVGSEPSCK
KMRRNRFKWGPASQQILYQAYERQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSN
LVTEVRVYNWFANRRKEEAFRQKLAMDTYPIPTHSMNPLLSHSHSSPHHHSSQTSASPPM
RYSQQGPSEVSSSTTISHHGSMATSQSVLQQVSPGGLDPSHSLLSPDAKMMSVSGGGLPP
VSTLTNIHSSHHTHQQTQNLIMPLSGVMTIAQSLNTSQSQSVPVINSVAGSLAALQPVQF
SQQLHSPHQHGLMQQSPSHMSQQPFMATVTHSHSQYLPLMYPHKQEPPQYSHQSRFPSAM
VVTDANSLSTLSSMSSSKQDSTVNKMVQLGGLSWCPLQAW
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgttctcgaaaatggtgtctaagttgacatctctccaacaggagctcttgagcgccttg
ttagattccggagttaccaaagatgttctgatccaagcgttggacgatatggaccctagc
ccgaatggctttggagttaagttggagaatctccagatgtctccgccaagttctaaaatc
aaccgaaatgattcggattcgaagccggtatttcttaccttgagcaacgggcacggtaag
ggcaaactgtcgggagacgagggctccgaggacggggacgatttcgatactccaccgata
ctaaaagaactccagtcgcttaacacggaggaagcagcagaacagagggcagaagttgac
cgaatattagctgaggacccgtggcgtgccgcccgcatgatcaaaggctacatgcaacag
cacaacataccacagcgcgaggttgtggacgtaaccgggctaaatcagtctcacctctca
cagcacctcaacaaaggcacgcccatgaaaactcagaagcgagcggcgctctacacctgg
tatgtcaggaaacagcgagaagttctcagacaattcaaccaggcagtgcaaggttctggc
agcaatatgaccgacaaaggcagtcaggatcaggtgctgtttttcttcccagagttcaac
cctcctggtcagggtatggggcagcaaggggaggaggtgggctctgaaccctcctgcaag
aaaatgagacggaaccgtttcaaatgggggcctgcatcccaacagatcctctaccaggcc
tatgaaagacagaagaaccccagcaaagaggagcgggaggctctggtggaggagtgcaac
agggctgagtgtctccagagaggggtgtctccatctaaagctcatgggctggggtctaac
ctggtcactgaggtacgggtctataactggtttgccaaccggcgtaaggaggaggccttc
cgtcagaagctggcgatggacacgtaccccatacccacccacagcatgaaccctctcctg
tctcacagccacagctccccacatcaccacagctcccagaccagcgcatccccccctatg
cggtacagccaacagggacccagtgaggtcagctcctcgacaaccatcagtcaccacggc
agcatggcgaccagccagtcggtgttacagcaggtgtctccaggcggcttggaccccagc
cacagtctgctgtcacctgacgccaagatgatgtctgtgtcaggtggaggcctgccacct
gtgagcacgctgaccaacatccacagctcccaccacacacaccagcagacacaaaacctc
atcatgcctctctctggagtcatgaccattgcacagagtctgaacacgtcgcagtcccag
tcggtgccggtgatcaacagcgtggcggggagccttgcagcgctgcagccggtgcagttc
tcccagcagctccacagtccccaccagcatggcctgatgcagcagtcccccagccacatg
agccagcagcccttcatggccaccgtgacgcactcacacagtcagtacctgcctcttatg
taccctcacaagcaggagccaccgcagtattcccaccagtcacggtttccctcagccatg
gtggtgacagacgccaacagcctcagtactctcagctccatgtcatccagcaaacaggat
tctaccgtaaacaagatggtgcaactggggggtctctcctggtgtcctcttcaagcctgg
tga
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