Coregonus clupeaformis (lake whitefish): 121567957
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Entry
121567957 CDS
T08357
Name
(RefSeq) serine/arginine-rich splicing factor 1B isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121567957
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121567957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121567957
Spliceosome [BR:
cclu03041
]
Common components
Common spliceosomal components
SR proteins
121567957
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
RRM_7
Nup35_RRM_2
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
121567957
NCBI-ProteinID:
XP_041734307
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All DBs
Position
6:complement(41187596..41194606)
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AA seq
254 aa
AA seq
DB search
MSGGVVRGPAGNNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFIEF
EDPRDADDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGFGGGGGGGVGGAPRGRYGPPSR
RSEYRVIVSGLPQSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDN
TKFRSHEGETAYVRVKVDGPRSPSYGRSRSRSRSRSRSRSAASRSRSNSRGGGARGGRGS
PRYSPRHSRSRSRS
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggaggcgtcgtgcgaggccctgcaggaaataacgattgtcgaatttacgtcgga
aatctaccccctgatattcgcaccaaagatgtcgaggacgtgttctacaaatacggagct
attcgagacatcgatttgaaaaatcggagaggaggacctccctttgcctttatcgaattt
gaagatcccagggatgcagacgatgccgtgtacggacgagacggctatgactacgacggt
tatcggctgcgagttgaattccctcggagcggcaggggtggggggagaggcggctttggt
ggtggtggtggtgggggggttggtggcgcccctagaggcagatacgggccgccatccaga
cgctccgagtacagggtcattgtctcagggcttccccagagtggcagctggcaggacctg
aaggatcacatgcgtgaggctggggatgtatgttatgctgatgttttcagagatggaact
ggggttgtggagtttgtgcgtaaagaagacatgacctacgccgttcgaaagctggataac
accaaattccgatcacacgagggagagaccgcttacgttcgcgtgaaagtagatggtccc
cgcagcccgagctatggaagatcccgttccaggagccgcagtcgaagcaggagccgcagc
gcagccagtcgcagccgcagcaactctcgcggtggtggtgcccgtggtggcagaggatct
cctcgctactctcctcgccatagccgctctcgctcccgttcctaa
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