Coregonus clupeaformis (lake whitefish): 121567972
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Entry
121567972 CDS
T08357
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03030
DNA replication
cclu03420
Nucleotide excision repair
cclu03430
Mismatch repair
cclu03440
Homologous recombination
cclu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121567972
03420 Nucleotide excision repair
121567972
03430 Mismatch repair
121567972
03440 Homologous recombination
121567972
03460 Fanconi anemia pathway
121567972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121567972
03032 DNA replication proteins [BR:
cclu03032
]
121567972
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121567972
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121567972
DNA replication proteins [BR:
cclu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
121567972
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
121567972
MMR (mismatch excision repair)
121567972
DSBR (double strand breaks repair)
HR (homologous recombination)
121567972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
Motif
Other DBs
NCBI-GeneID:
121567972
NCBI-ProteinID:
XP_041734332
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All DBs
Position
6:41635729..41682020
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AA seq
608 aa
AA seq
DB search
MTNMLTKGAIEALTKGSKDLQNPILQLVNIRKIDGGSGPARFRLMMSDGQHSMSSFMLST
QLNPMAEDNQLAPNCICQLNRNVTNVLKDGRLVVVILDMEVVKSADEVAGKIGEPTPYVE
GQSKAPQSAPNPSVHPLQPQNGNYGSMNKGPSREFGGKKAMPPSAMPSTPGGSSKVVPIA
SLNPYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDESGEIRVTAFTQEVDKFYSI
IETGKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCEDTQDVPMVQCNFVSIADL
EAREKDAILDVIGVCKSVADVTRLTTKNNREVSKRTINLMDQSGKLVDVTLWGEEAENFD
GSGQPILAIKGAKLSDYGGRSLSASFSSTIMVNPDIPEAYKLRGWYDKEGHSMDGQSLTE
ARTVGGGGGNTNWKTLTDIKTEHLGHGDKADYFSCIATIVYIRKENCLYQACPSQDCNKK
VVDQQNGMFRCEKCDKEFPNFKYRLIVSANIADYGDNQWVTCFQESAEAILGQNAAYLGQ
LKDSNEAAFEEIFQQANFHTFIFRNRVKLETYNDESRIKATVMEVKPVDHKEYSKRLIMN
IRKMAAAQ
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgactaacatgctgacaaaaggagcgatagaggctctaaccaaaggctctaaggattta
caaaaccccatacttcaattagtgaacatccgtaaaattgatggtggcagtggaccagcc
cgctttcgtctgatgatgagtgatggacagcactcaatgtcctcattcatgctctccact
caactcaacccaatggctgaggacaaccaactggccccaaactgtatctgtcagctgaat
aggaacgtgaccaatgtcctaaaggatggacggcttgtggtggtcatattggacatggag
gtggtgaagtctgctgatgaggtggctggaaagatcggagagcccacgccttacgtggaa
ggtcagagtaaagccccacagtcagcccccaatccctcagtccaccccctgcagccccag
aatggaaattatggctccatgaacaaaggtcccagcagagagtttggggggaagaaggcc
atgcctccgtctgccatgcccagcactcctgggggatcctccaaagtcgtgcccatcgcc
agcctcaacccctaccagtcaaagtggaccatccgagcccgtgtcaccaacaagagcggc
atccgcacctggagcaactctcgtggggacggcaagctgttctccatggagattgtggat
gagagtggcgagatccgagtgactgcctttacccaggaggtggacaagttctacagcatc
atcgagactggcaaggtgttctacatctccaagggatcactgaagatcgccaacaagcag
tactcgtccctgaagaatgactatgagatgaccctgaatggagagtccaccatcatcccc
tgtgaggacacccaggacgtacccatggtgcagtgcaacttcgtctccatcgccgacctg
gaggcccgagaaaaggacgccattttggatgtgattggagtctgtaagagcgtggccgac
gtgacccgcctcaccaccaagaacaaccgtgaggtctccaagaggacgatcaacctgatg
gaccagtctggtaaactggtggatgtcaccctgtggggggaggaggcagagaactttgat
ggctctgggcagcccatcctggccatcaaaggggccaagctgtcggactatgggggcaga
tctctgtctgcttcgttcagcagcaccatcatggtcaaccctgacatccctgaggcatac
aagctgcggggctggtatgacaaggagggtcactctatggatggccagtctctgacggag
gcgaggacggtaggaggaggaggagggaacaccaactggaagaccctgactgacatcaag
acggagcacctcggacacggagacaaggcagactacttcagctgcattgccaccatagtg
tacatccgtaaggagaactgtctgtaccaggcttgccctagtcaggactgcaataagaag
gtggtggaccaacagaacggcatgttccgctgtgagaagtgtgacaaagagttcccaaac
ttcaagtaccgactcatcgtctctgccaacatagcagactacggggacaaccagtgggtg
acctgcttccaggaaagtgctgaagccatcctgggacagaatgctgcttacctagggcag
ctcaaggactcgaatgaagctgccttcgaggagatctttcagcaggccaacttccacacg
ttcatcttccgtaacagagtcaagctggagacctacaatgacgagtcccggatcaaggcg
acggtgatggaggtgaaacctgtggaccacaaggagtacagcaagagactcatcatgaac
atcaggaagatggctgccgcccaataa
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