Coregonus clupeaformis (lake whitefish): 121567988
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Entry
121567988 CDS
T08357
Name
(RefSeq) neural cell adhesion molecule 1 isoform X1
KO
K06491
neural cell adhesion molecule
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
cclu04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
121567988
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121567988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121567988
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121567988
04090 CD molecules [BR:
cclu04090
]
121567988
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121567988
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cclu00537
]
121567988
04091 Lectins [BR:
cclu04091
]
121567988
Membrane trafficking [BR:
cclu04131
]
Exocytosis
Tethering complex
Exocyst complex assembly proteins
121567988
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
NCAM1/2
121567988
CD molecules [BR:
cclu04090
]
Proteins
121567988
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
121567988
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cclu00537
]
Others
121567988
Lectins [BR:
cclu04091
]
I-type lectins (Siglecs)
121567988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
C2-set_2
C2-set_3
Motif
Other DBs
NCBI-GeneID:
121567988
NCBI-ProteinID:
XP_041734363
LinkDB
All DBs
Position
6:complement(22242814..22351425)
Genome browser
AA seq
1299 aa
AA seq
DB search
MLHAKDILLALLLVGSTVCLEVEITPTQGEISVGESKFFLCEVVGVAKEIDWYSPSGERI
EPNKPEITVTRNDESSSTLTLYKAGVDSAGTYKCLATNGDQSAEATVNVKFFQRITFKNA
PSPQEFNGGDNANIVCDVISSPPPTIIWKHKGAKIQMEKDVRFKILPNNHLQIRGIKKTD
EGSYTCEGRLMARGEIDLKIIRVIVNVLPTIRVWQSEVNATAGVGQSAMLTCAADGYPEP
MVTWARASVLLESGEKYSFNEDGSEMTIMEVAKLDEGEYTCIAKNKAGESEQELSLRVFV
KPKITFLLNQSTSEMEEQVTLTCEASGDPTPTINWSFGLRPFTEGEQAHLNRIYQASWTR
PEQHKSLDGNIVVRSDARVSSLTLKYAKFTDAGQYLCSARNAIGVDSQPAYLEVRYAPKI
QGSVTVYTWEGNAANISCEVLAHPSDVSMLWLRDGFQLPNANVTKAKVFQSPTASYLEVT
PVSENDFGSYNCTASNEMGTGSKEFLLIQADVPSAPSLREVEPFSSSARVEFQGPDATGG
VPVLRYRAEWKTVGMGSWVQRVYEVHGGALSEVTITGLKPGTNYLVKMSAINGKGEGETS
PAVVFKTEPVRYSYANGIFHFFTEDSEGEPEPPKLEGTLQTKGNSLKVNWFKQDDGGSPI
THYLVRYKPKHQADWKPEIRLPSGSEYVVLSGLEWNTEYDVFVVAENQQGKSQPGTLTFR
TSPEPAAIPDIDGESALSMGLMAGILILAFVLLLLAVDVTCYFTNKCGLIMCLCGKPGSG
AKGHNLEQGKAAFIKDESKEPIVEVKTEDECTANHNAGGPTEPNETTPLTEPELAAHTAA
LALDTLSSVATNSDTANTTYDPAQDSPSSESTALTCSLSALATDPLPAPAPAPTPESNTA
PPTPLISTSDITARVAPLLDLLGDSSPRAENKMSATAVNATDSPKSPKKSPIPIPPRRRN
SNRPAPSPPTPKSPTPTHSTPSPTVAPRKSAPDSPSLAHSTASPTPNTRKAAPIAPDSLS
PAPTVFTFPASDTSTLKPAPTATSTAKPVPVTPTVLDSSTPAPDTDKPDSTTKDTHTPAP
NIDPTTTSTPKSVPSAPTTAFNADITAAIVHEDTTKYAPVFPDILTPIPAPTNAPTSAPN
APTAPSFATPAAPMVTITPASTTYDTPTPTLTTHMPTTTEPQAQEIELELTNGVETESPS
LPPAEPTRFQSSPTPSAAPVLSSSSSSLANRDGFGADLQASGPPALEELDSLAKAAPLNH
EKIFEEKSKTEEVKTALSEVTTEHNDVTQTNASASDSKA
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgctccacgcaaaggatatccttttagctctgcttctcgtgggctctacagtttgtctg
gaagtggagatcacccccacccagggagagatcagtgtcggagagtccaagttctttctg
tgtgaagttgttggggtagcaaaggagattgactggtactcgccgagcggggagaggata
gagcccaacaaaccagagatcaccgtaacccgaaacgacgagtcctcgtccaccctcacg
ctctacaaggccggggtggacagcgctgggacctacaagtgtctggccaccaatggagac
cagtcagcagaagccaccgtcaacgtcaagttcttccaaaggatcaccttcaagaacgcc
ccctccccccaagagttcaatggaggggacaacgccaacatcgtgtgtgacgtcatcagc
tcccctccacccaccatcatctggaaacacaaaggagctaagattcagatggagaaggat
gtccgctttaagatcctgcccaacaaccacctgcagatccgaggcatcaagaagacagac
gaggggtcgtacacctgtgagggccgcctcatggcccggggagagatcgacctgaagatc
atcagggtcatcgtcaacgtgctccctaccatccgggtgtggcagtctgaggtgaatgcc
acagcaggcgtgggccagtctgccatgttgacctgtgcggctgatggatacccagagccc
atggtgacctgggcacgggccagtgttcttctggagtcaggagagaagtacagctttaat
gaggacggttcagagatgaccatcatggaggtggccaagctggatgagggagagtacacc
tgcatcgctaagaacaaggctggggagagcgaacaggaactcagcctcagagtgtttgtg
aaacctaagatcaccttcctgctgaaccagagcacgtctgagatggaggagcaggtgact
ctgacctgtgaagcgtcaggggaccccacccccaccatcaactggagcttcggcctgcgt
cccttcactgagggagagcaggcacacctaaacaggatctatcaggcctcttggactcgg
cccgagcaacacaagagtctggatgggaacatcgtagtgaggagtgatgctcgtgtgtcc
tccctcacgctgaagtacgccaagttcaccgacgctggccagtacctctgctctgcacgc
aacgccatcggagtggattctcaacccgcctacctggaagtccgctatgcccctaagatc
cagggctcagtgacagtgtatacctgggagggaaatgcagctaacatcagctgtgaggtc
ctggcccaccccagtgacgtgtccatgctgtggctaagggacgggtttcagcttcccaat
gctaacgtcaccaaagccaaggttttccagagccccacagccagctacctggaggtcacc
ccagtgtctgagaatgactttgggagctacaactgtactgcttccaatgagatgggcaca
ggatccaaggagttcctcctcattcaggctgatgtcccgtcagccccgtccctcagggag
gtggagccgttctccagctcagccagggtggagttccaggggcctgacgccaccgggggt
gtacccgtcctcaggtaccgggccgagtggaagactgtgggcatgggcagctgggtgcag
agggtctatgaggtccatggaggagctctgagtgaggtaaccatcacaggcctgaagcct
gggaccaactatttggtgaagatgtcagccatcaatggcaagggagagggtgaaactagc
cccgctgtggtcttcaagacagagcctgtccgttattcttacgcaaatggcatttttcat
tttttcactgaggactcagaaggggaacctgaaccgcctaagctggagggaacactccaa
accaaaggcaactccctcaaagtcaactggttcaagcaggacgatggaggctcaccaatc
acacactacctagtccgctataaaccaaagcatcaggccgactggaagccagagatccgg
ctgcccagtggcagtgagtatgtggttctgagcggactggagtggaacacggagtacgat
gtgtttgtggtggcagagaaccagcaggggaagtcccaacctggaaccctgacgttcaga
acctctccagaacccgctgccatcccagatatagacggtgagtctgccctctccatgggc
ctcatggcagggatcctcatcttggccttcgtcctgctgctcctggctgtggatgtcacc
tgctacttcaccaacaagtgtggcctcatcatgtgtctgtgtggcaagccaggcagcggg
gccaagggacacaacctagaacagggcaaggctgcgttcataaaggatgagtccaaagaa
ccgatagtggaggtgaagacagaggatgagtgcacagccaatcacaatgcaggaggaccc
acggaacccaatgagaccacaccccttacagagccagagctggccgctcacactgctgcc
ctggctctggacaccctctcgtctgtagccaccaactctgacacagccaacacaacctat
gaccctgcccaggacagcccctctagcgagagcaccgccctcacctgtagcctgtctgcc
ctcgccactgaccccctgcctgcccccgccccggcacccaccccagagtccaacacagcc
cccccaacccccctcatctcgacctctgacatcacagctagagtagcccccctgttagac
cttctgggagacagctctcctagagcagagaacaaaatgtctgccactgctgttaatgcc
acagacagccctaaatctcctaaaaagtcccctattccaataccacctaggcgtcgaaac
tctaacagacctgctccttctcctcccactcccaagagccccacacctacccactccacc
ccctctcctaccgtggcccccaggaaatctgccccagacagtccctctcttgcccactcc
actgcctctcctaccccaaacaccaggaaagctgctcctattgccccagacagtctctct
cctgctcctacggtgttcactttcccagcctctgacacctccacccttaaacctgcacct
actgccaccagcactgctaaaccagtccctgttacccccactgtcctggactctagtaca
ccagcccctgacactgacaaacctgactctacaaccaaagacactcacactcctgcccct
aatatagaccccaccaccacaagcactcccaaatctgttcctagtgctcctactactgcc
ttcaatgctgacataactgctgctattgttcatgaggacacaaccaaatatgcccctgtt
ttcccagacattctcactcctattcctgctcccacaaatgcccccacatctgcccctaat
gctcccactgccccgagctttgccacacctgctgcccccatggtcactatcacacctgcc
tctactacctacgacaccccaacacccaccctgaccacacacatgcccaccaccacagag
ccccaagcccaagagatagagttagagttgaccaatggggtggagactgagagtccctcc
ctgcccccagcagagcccactaggtttcagagtagtcccactccctccgctgcccctgtc
ctttcctcctcctcctcctccctggctaaccgagacgggtttggggcagacctccaggcc
tcaggccccccagctctggaggagttagacagtctggccaaggctgctccactcaaccat
gagaagatatttgaggagaaaagtaaaacagaggaggtgaagacagccctgtcagaggtg
accacagaacacaacgatgtcacacagacaaacgccagcgccagcgacagcaaagcatga
DBGET
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