Coregonus clupeaformis (lake whitefish): 121568035
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Entry
121568035 CDS
T08357
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04142
Lysosome
cclu04144
Endocytosis
cclu05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121568035
04142 Lysosome
121568035
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
121568035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121568035
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121568035
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
121568035
Exosome [BR:
cclu04147
]
Exosomal proteins
Proteins found in most exosomes
121568035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
121568035
NCBI-ProteinID:
XP_041734508
LinkDB
All DBs
Position
6:complement(24014797..24039209)
Genome browser
AA seq
1687 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPVKIFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWMFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPAEGPLQTRLLEMNLVHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVKGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHDGCEEPATHNALAKIYIDSNNNPERFLRENTF
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASV
LLESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VGQAAAQSGNWEDLVKFLQMARKKSRESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDERMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGNEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMM
SHPSDAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFF
MKTKQLSLVKPYLRSVQNHNNKGVNEALNNLFITEEDYAALRASIDAYDNFDNITLAQGL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDVELAEELLAWFLE
EDKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDK
LDASESLRKQEEQNTESQPIVYGTPQLMLTSGPGQAVPSQPGYGGYGYPAAPAGYGQPPQ
PGFGYGM
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatactacctatccgattccaggagcacctgcagctccagaacctggggatc
aatccagctaacattggattcagcacccttactatggagtctgataagtttatctgtata
agagagaaagtgggcgagcaggcacaggtggtcatcattgatatggccgaccccaacact
cccatccgtaggcccatctctgcagatagcgccatcatgaaccctgctagcaaagttatt
gccctcaaagacgccgccaaaaccctccagatcttcaacattgagatgaagagcaagatg
aaggctcacaccatgactgatgacgtcactttctggaagtggatctccctcaacacagta
gcactggtcacagacaacgccgtctaccattggagcatggagggagactcccagccagtc
aaaatctttgaccgacactccagccttgcaggctgtcaaatcatcaactaccgcaccgac
gccaaacagaaatggctgcttctcattgggatttcagcacagcaaaatcgtgtggtggga
gccatgcagctgtactctgtggacaggaaggtgtcccagcccattgagggccatgctgcc
ggctttgcccagttcaaaatggagggtaacacagaagaatccacactgttctgcttcgct
gtccgagggcaagctggaggaaagttacacataattgaagtggggaccccaccaacaggc
aatcagccatttccaaaaaaggcagtggatgtgttcttccctcctgaggcccagaatgac
ttccctgtagccatgcagatcagctctaagcaggatgttgtctttctcatcaccaaatat
ggctacatccacctgtatgacctggagactggcacctgcatctacatgaacaggatcagt
ggggagaccatctttgttacagccccacatgaaccaaccgctggcatcattggagtcaac
aggaaaggacaggtgttgtcggtgtgtgtggaggaggagaacatcatcccctacatcacc
aacgtgctccagaacccagacctggccctgcgcatggccgtgcgcaacaacctggccggg
gccgaggagctgttcgcccgcaagttcaacaccctgttcgctgcagggaactactccgag
gctgccaaggtggccgccaacgctcccaagggtatcctgcgtaccccagacaccatccgt
aagttccagagcgtgccggcccagccgggccagacctctcccctgctgcagtactttggc
atcctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtc
ttacagcagggacgcaagcagctgctggagaaatggctcaaagaggacaagctggagtgt
tcagaggagctgggggacctggtgaagtcagtggaccccactctggccctcagcgtctac
cttagggccaacgtgcccaacaaagtaattcagtgcttcgctgagaccggacagttccag
aaaattgtcctctatgccaaaaaggtgggttacaccccagactggatgttcctgctgagg
aacgtgatgagaatcagtccagaacaaggtctgcaattctcccagatgctggtgcaggac
gaggagccgctggctgacatcacacagattgttgacgtgtttatggagtataacctgatc
cagcagtgtacctccttcctcctggacgccctgaagaacaacaggcctgctgaggggcct
ctgcagacacgcctgctggagatgaacctggtccatgccccacaggtggccgatgccatc
ctgggcaaccagatgttcactcactacgaccgtgcccacgttgcccagctgtgtgagaag
gctggcctgctgcagagggcactggagcactacaccgacctgtacgacatcaaacgggcc
gtggtgcacacacacctgctcaaccctgagtggctggtgaacttctttggctccctgtca
gtggaggactctctggagtgtcttcgggccatgctgtcggccaacatccgtcagaacctg
caaatctgtgtccaggtggcctccaagtaccacgagcagctctccaccaactccctcaca
gagctctttgaatccttcaagagctttgaaggtctgttctacttcctgggttccatcgtt
aacttcagccaggacccagaggtccacttcaagtacatccaggccgcctgtaagacggga
cagatcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtc
aagaacttcctcaaggaagctaagctgactgatcagctccccctgatcatcgtgtgtgac
cgcttcgactttgtccacgacctggtcctctacttgtaccgcaacaccctgcagaaatac
attgagatctatgtgcagaaggtgaaccccagccgtctgccggtggtgattggagggctg
ctggatgtggactgtgctgaggatgtgattaagaacctgatcctggtggtgaaaggacag
ttctccactgatgaactggtggctgaagtagagaagaggaacagactgaagctgctcctg
ccctggctggaggcccgtatccacgatggctgtgaggagccagctacccacaatgccctg
gccaagatctacatcgacagcaacaacaacccagagcgcttcctgcgtgagaacaccttc
tacgacagccgcgtggtgggcaagtactgtgagaagagggacccccacctggcctgcgtg
gcctacgagagaggacagtgtgaccaggagctcattaatgtgtgcaatgagaactctctg
ttcaagagtctgtctcgctacctggttcgccgtaaagaccctgagctgtgggctagcgtg
ctgctggagagtaacccgttcagaagacccctcatcgaccaggttgttcagactgccctg
tctgagacccaggacccagaggaggtgtcagtcacagtcaaggccttcatgactgcagac
ctccccaacgaactcattgagctgctggagaagatcgttctggataactcagtcttcagt
gaacacagaaaccttcagaacctgctgatcctgacagccatcaaggcggaccgtacccgt
gtgatggagtacatcaaccgcctggacaactacgacgcccccgacatcgctaacattgcc
atcagcaatgagctcttcgaggaggccttcgccatcttcaggaagtttgacgttaacacc
tctgccgtgcaggttctgattgagcacattgggaacctggaccgggcctatgagtttgct
gagcgctgcaatgagcctccagtgtggagccagctggccaaggctcagctccagaagggt
ctggtgaaggaggccatcgactcctacatcaaggctgacgacccctctgcctacatggag
gtgggtcaggctgcagctcagagcggtaactgggaggacctggtgaagttccttcagatg
gcccgtaagaagtcccgtgagtcctatgtggagacagagctcatcttcgccctggccaag
accaaccgcctggctgaactggaggagttcattaatggacccaacaacgcccacatccaa
caggtgggtgacaggtgttatgatgagaggatgtatgacgcggccaagctgctctacaac
aacgtgtccaacttcgggcggctagcgtccaccctggtccacctgggcgagtaccaggct
gccgtggatggagcccgcaaggccaacagcacccgcacctggaaagaggtgtgctttgcc
tgtgtggatgggaacgagtttcgcctggcccagatgtgtggcctgcacatcgttgtccat
gctgatgaactggaggagctcatcaactactaccaggaccgtgcttactttgaggagctg
atcaccatgctggaggcagccctgggcctggagcgggctcacatgggcatgttcaccgag
ctggccatcctctactctaagttcaaaccccagaagatgagggagcacctggagctcttc
tggtccagagtcaacattccaaaggtcctgagggctgcagagcaggcccacctgtgggcg
gaactggtcttcctctatgacaagtatgaggagtttgacaacgccatcatcaccatgatg
agccacccctcagacgcctggaaggagggacagttcaaagacattgtcaccaaggtggcc
aatgtggagttatactacaaggctatccagttctacctggagttcaaaccattgttactg
aacgacctgctcatagtgctgtcaccacgactcgaccacacccgcgcagtcaacttcttc
atgaagaccaagcagctgtcactggtcaagccgtatctgcgatcagtgcagaaccacaac
aacaagggtgtcaacgaagcacttaacaacctcttcatcacggaggaagactatgcggcc
ctgcgtgcctccatagacgcctacgataactttgacaacatcaccctggcccagggcctg
gagaagcatgagctgattgagttcaggaggatcgctgcctacctcttcaaaggcaacaac
cgctggaagcagagcgtggaactctgcaagaaggacaaactctacaaggacgccatgcag
tacgcatctgagtcgaaagacgtcgagctggctgaggagttgttggcgtggttcctggag
gaggacaagaaggagtgctttgccgcctgcctcttcacctgctacgacctgctgagacct
gacgtggtgctggagacggcctggaggcacaacatcatggacttctccatgccctacttc
atccaggtcatgagggagtacctctccaaggttgatgcgattaaggaaaaggtcgacaag
cttgatgcctccgagtctctaaggaaacaggaggagcagaacacagagtcccagcccatt
gtttatggcacgccccagctcatgctcacttcaggccctggtcaggccgtgccctcccag
cctggctacggaggttacggctacccagcagcacccgccggttatggccagcctccccag
cctggctttggctacggcatgtga
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integrated database retrieval system
