Coregonus clupeaformis (lake whitefish): 121568163 Help Entry 121568163         CDS       T08357                                  Symbol dchs1a Name (RefSeq) protocadherin-16   KO K16507   protocadherin-16/23 Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu04519   Cadherin signaling Brite KEGG Orthology (KO) [BR:cclu00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04519 Cadherin signaling     121568163 (dchs1a)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:cclu04515]     121568163 (dchs1a) Cell adhesion molecules [BR:cclu04515]  Cadherins   Cadherin related    121568163 (dchs1a) SSDB OrthologParalogGFIT Motif Pfam:  Cadherin Cadherin_FAT4_N Ig_CLSTN Cadherin_CELSR2_9th Ig_Cad99C_N Fibulin_C RET_CLD1 Cadherin_pro LapA_dom CADH_Y-type_LIR TED6 Motif Other DBs NCBI-GeneID:  121568163 NCBI-ProteinID:  XP_045076333 LinkDB All DBs Position 6 Genome browser AA seq 3310 aa AA seqDB search MKTEAKGFGRSVSRSLQGDGRWSREVLLLAYILLELITVHSSTVLGNLELQLDEEQPAGT IIGDISTGLPPGVTASLYFISDHEGTGVGSDLEIDESTGIIKTAKVLDHELRDRYNFIAV TMTGVTVEVTITVNDINDHAPTFPRRRAAFKIPEMTAVGTRFPLEPAVDGDKGQLTTQGY LIKDGNTGQAFLLETRRGSNQVLYLDLVVNTLLDSETRPSYTLSLEAFDGGSPKRTGQMV LDVTVQDINDNAPVFNQSRYHAIISENLQPGSNILQVFASDADQGDNGLVLYEINRRQSD PEHYFVIDSRTGVITLNKPLDFEMRRVHELVVQARDNATQPEVTNAFVTIHVRDYNDNQP TMTIIFLSEDGSPQISEGAQPGQYVARISVTDPDYGEYANVNVSLEGGDGKFALTTKDNI IYLMCVDQILDREERDTYELRVMATDAGTPPLRAESSFTIQVTDVNDNPPLFDQQEYRQV IPEVVFPGSFVLQVTARDKDQGPNGDITYSLLQDSQAGLDENQAQWFTIDPVTGIITTLS QLDYESQPRPNVTVVATDGGRPSLSSTALVHVVLQDINDNEPVFGSNFYNVSIKENTAAG TCILQVTATDADGGSFGSISYSLGSGINSAVPSQFSVGKETGQICTNVALDRDQGPTSYD FTVTAVDGGGLNSMAYIRVDLLDINDNRPVFYPVSYAVSLSSQSAPGTSVVKVTALDPDT GENGRVTYRTVPGGNSPFFTLNKDTGVISLSRSLHGKANTVIPMVVSAQDGGRLAALVNA RVNISVVAGLVAPPVFEHSQYSFSVSENVLRGTEVGVVQAISKNGGPSKDILYTISSGDP SGYFTVDQESGALRTSLPLDHEAQPSLTLELQARSGSPPAFGQTFVHITIQDINDNAPVF LPSSSESLLLPEHTEMGTVVYRVQAQDQDSGLNGQITFDLSSTATSSGGQITFSMERRTG EIRLVGGLSYDVTPRYDLKVTAKDGGTPQLSSTMMLVVHVQAENDHGPVFDTLTYRVELR ENTPLSTRFLQVRALSRDTTGSGSSSPLAYHLRPDGDAAGFGIAADSGWLFVKSALDREV KDMYMLMVLATVGHGQLKKTGSATVRVSVTDENDNSPRLTQERAFLAVRENLPAGSGFGW VSAMDRDSGLNGRLSYRLLHPDRHFQINSHTGEISTRVGLDREQQSSYQVLLVVQDGGTP PRSATGTAFITILDENDNTPSFRHSQPGRGLTMQVTEGQASGLLLGKVQAKDPDEGENGT VYYSMSGPRAERFSLNPTTGELRSSSPLSRSDRAEYSFTVTATDRGQPSHSTTCSLHIQV LSASRAPSKANPLSIYFNSVEEAKPGSVIGSVRSHDGFELPEDGHVTYTLVGGSDRDGTF MVDRQTGDVYLTRELDYERSARYTLQIEVDDFSTTLPSSHLVQLDIEVEDSNDHAPRFPE DPVTLVIPENMEPGATIYTFQASDQDGSGPNSLLTYSILHQYPDLPDLLTLHPSTGVLTL AQELDHEVTSSLILVVQATDSALNASQQRWGSVTARVFVTDENDNAPVISSPSAVSVMED QPVGFFVLYVVARDADQGENGRVSYFIETGNAGGTFSLNLNTGSLSILKPIDREEQDLFN LTIVAQDHGVPVLSSSQLLSVQVIDVNDEVPWFQENQYQAQITENQPAGTTVLVVSASDL DQGTNGQLTYGGISEEGFSIHPATGVITTTKALDREEQEQYTLTVYARDGGVPPNFARAS VRIRVLDENDNAPAFSRLYYSLEVPENMEAVELFTLRATDLDTGDSGEMTYKITAGDPSG DFCMDRKSGVLSTSRPLDRERRARYSLTVTALDGGSPALSSTATVEVTLLDVNDHSPQFT SPSYTADLSEDVPIGSLVLEVSATDLDEGSNSQVLYFLSRGSKGMFIIDQHTGHVITAAP LDRERTASYTFDVCAIDSSPASPRNSTATVNVYVQDVNDNAPFFIQDPLVINISASSVSS HRVLATMRAEDRDFGANGSVFYRFASPVRGFTINSLTGDIQATEKLQGLTQGQRTLIVEA MDQGSPAQSSLGVVVIYIREQTYKGIRFSRHARDISLQENAAKGTTVVQTQAQYPDGSRS GISYSIFSGNTLHSFGISSSTGEIWVQSSMGLDYEETPRLRLVVKAETASSSSFMAVNLN LQDVNDNLPRFQLQNYVAYIREAQGYHFPIIQVVADDLDQGQNSQVTYSLQSSSLSGLFK IDPLTGSITTAAIMDREIWTQTKLVVTATDWGTPRLAGSATLTVIIVDLNDNSPTIPLPR EIRVPENTLIGSVITQVTGNDVDSGPALSYTLHLDPSSQGVFGIHRYGGGVSLTAPLDYE DRTWYTLTVRATDSKHQTEANLTILVEDVNDNAPTFTQDLYQVTLAEHSPAGSAVVTVTA TDRDSGENGRVTYKVMSSTRDIFYIDPSNGTLFITQQAELNSENPSILVVIESRDMGTPA LSSIATVQVQVTDVNDNAPVFHQSEYRATVSEDGLPGATILTLEATDGDASRDNCGFDFT IASGNEGNAFQIESSVRFLEGRGFQTVGSLVLTGEGLDFEAVSSYNLTVVVSDRGVPQRS SAVSALISVTDTNDNPPAFSRAEYSVVLSEGAATGTEVLSLSATDPDSSAVGKVQYLISS GDETGMFQVDRWTGALRLQRPLDSERQASYVIIVQASDGQGHYALAPVTVEVKDINDNRP YFPLPILTASVRENQPHNALVTMLHAIDQDTGVFGQLRYYMLDKTGEGKDAFLVNQMSGE VRTRSTFDFEKVNLFNFVALAMDAGNYSATVTVQVYVTGEDEYDPVFSDSEFSFLVPEGA KKGQSIGQVTARDEDEGVDGIVLYSLADPSPYFQVNASTGVVSLKMDSHVRHLGRSKREV RVMTLDLKAHSPLETSRVATARLTVDVTHTSFGVASDMNLLLVSVIAVSLGAILILIFIA MALFCVRLRRQRKEQQSRCRPPASPGHGTMLHKLEETKVTGTDRNDRIYNQALPGYASDQ TGSGGGGPYPRGGSLDPSHSSGRGSAEAAEDDEIRMINEYPRVSSISSSMQEHISARGPD SGIQQDADQLSDVSCEPNMDANQWFKAKKLASLSGTLLAGQVPVYREDGGGYLGVGRGLN ISHPKDYAFPVDGKPTVDGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLANVFTEIARL KDETAPPNPRRPLQHKAKADPKPPRIDPPPLITSIAHPGAKTVPVKPAPVKPSVGRSSFP HLASLRRSPISHEGSPSSVAMSPSFSPSLSPLAARSPAITPFGVTQGPSASMISTTEHSM EHSEEAEMRI NT seq 9933 nt NT seq  +upstreamnt  +downstreamnt atgaagaccgaggccaagggttttgggcggtctgtgtcgaggtcgctgcagggtgatggc cggtggagccgagaggtcctgttgctggcctacatcctcctggagctgatcaccgtccac tcctccaccgtcctggggaacctggagctccagctggacgaggaacagcctgccgggacc atcataggggacatcagcactgggttaccgcctggcgtcaccgcaagtctttactttatt tcagaccacgagggcaccggggtggggagtgacctggaaatagatgagagcacgggcatc atcaagacagccaaggttttggaccatgagctgagggaccggtacaacttcattgcagtg actatgacgggcgtgactgtcgaagtgaccatcacggtgaatgacatcaatgaccacgct cccacgttcccccggaggagagcggcgttcaagatcccggaaatgacggcggtgggaacc aggttccccctagagccggcggtggacggggacaagggccaactgactacccagggatac ctcatcaaagacgggaacaccggccaggctttcctcctggagacccggagaggatccaac caggttctctatctggacctggtggtcaacactcttctggacagcgagaccagaccgtct tatacgttatccctggaggcgttcgatggaggctcccctaagaggactggtcagatggtg ctagatgtgacggttcaggatatcaacgacaatgctccagtcttcaaccagagtcgctac cacgccattatctcagagaatctgcagccgggtagcaacatcctccaagtctttgcctcc gacgccgaccagggagacaacggcctggttctctacgagatcaaccgcaggcagagcgac ccggagcactacttcgtcatcgactctcgtacgggcgtcatcacgctcaacaagccgctg gactttgagatgcggagggtccatgagctggtggtccaggcaagggataacgccacgcag cccgaggttaccaacgccttcgtcacaatccacgtccgggactacaatgacaaccagccc accatgaccatcatcttcctcagtgaagacggctccccacagatctccgagggcgcccag cccggccagtacgtcgcccgcatctccgtcaccgacccggactacggagaatacgccaat gtcaacgtctccttggaaggaggggacgggaagtttgctctgaccaccaaggacaacatc atctacctgatgtgtgtggaccagatcctggaccgagaggagagggacacatacgaactc agggtgatggctacagacgcaggcacccctcctctcagggctgagtcctcctttacgata caagtcactgatgtcaacgacaaccctcctctgtttgatcagcaggagtacagacaggtc atacctgaggtggtgttcccaggaagcttcgtattgcaggtcacggctagagacaaagac caggggcccaatggagacatcacatacagcctcctccaggatagccaggccggcctggat gagaaccaggcccagtggttcaccatagacccagtaacagggatcatcaccacgctctcc cagctggattacgagtcgcagcccaggccgaatgtgacagtggtggctacagacggaggg aggccttccctgtcctccacagctctggtccatgtggtactgcaggatattaacgacaac gaacctgtgttcggtagcaacttctacaacgtatccatcaaggagaacacggctgctggg acctgcatactacaggtgacagcgacagatgcagatggtggctccttcggctccatcagc tactctctggggtcaggcatcaacagtgctgtcccttcccagttctctgtagggaaggag acaggacagatctgtaccaacgtggctctggacagagaccagggaccaaccagctacgac tttactgtcaccgccgtggacgggggcggtctgaactccatggcctacatcagggtggac ctgctggacatcaacgacaacagaccagtcttctaccctgtgagctacgccgtcagcctc agctcccagagtgcacctggcacctctgtcgtcaaggttacagcccttgaccccgacact ggggagaacgggagggtcacgtaccgaaccgtccccggaggcaactcccccttcttcacg ctcaacaaagacacaggtgtgatctccctgtcccggtcgctgcatggcaaggccaacacg gtgatccccatggtggtttcagcccaggacggagggcgtctggcagcactggtcaacgcc cgggtcaacatcagtgtggtggcaggcctggtggcgccccctgtgttcgaacacagtcag tacagcttctctgtgtctgagaacgtactgcgagggactgaggttggcgtcgtacaggcc atcagtaagaacggtggccccagtaaggacatcctgtacaccatctcctctggagaccct tctggctacttcaccgtggaccaagagagcggcgccctgcggaccagccttcccctggac cacgaggcccagccctctctaaccctggagctccaggctcgtagcggcagcccccctgcc ttcggtcagaccttcgtccacatcaccatccaggacatcaacgacaacgctcctgtcttc ctgccctcctcttctgagtctctcctcctcccggagcacacagagatggggaccgtagtc taccgcgtccaggctcaagaccaggactctggcctcaacggccagattacttttgacctt tcctccactgcgacctcaagcggaggtcaaataaccttttccatggagcgcagaacggga gagatccggctggttggcgggctgtcatatgacgtaacgccgcgctacgacctgaaggtg acagctaaagatggcggcacgccccagctgagctctaccatgatgcttgtggtgcacgtc caggcggagaatgaccacggtcccgtgttcgacaccctgacctaccgcgtggagctgagg gagaacacgccgctcagcacacgcttcctacaggtgcgagctctgagccgggacaccacg ggttcaggctcctcctctccactggcgtaccacctgagacctgacggagacgcagcaggg tttggcatcgcagcagacagcggctggctgtttgtgaagagcgccctggacagagaggtg aaggacatgtacatgttgatggttctggccacagtgggccacgggcagctgaagaagacg ggcagtgctacggtgagggtgtcggtgacagatgaaaacgacaactcaccccgtttgacc caggagagggctttcctggccgtgagagagaaccttccggcagggtcagggttcggatgg gtgtcggctatggaccgtgactcagggctcaacggcaggctcagttacagactcctacac ccagacagacacttccagatcaactcacacacaggtgagatcagtacccgtgtaggtctg gacagggagcagcagagtagttaccaggtgttgttggtggttcaggatggaggtactccc ccacgcagcgctacagggacagccttcatcaccatcctggatgagaatgacaacactccc tccttcagacacagccagcctggcagaggactcaccatgcaggtgacggagggccaggcg tcaggtctactgctggggaaagtacaggccaaggaccctgatgagggagagaacggcact gtttactactccatgtcaggtcccagagcagagcgcttctctctgaaccctactacaggt gaactgcgttcctcctctcctctgagtcgctctgacagagctgagtacagcttcactgtg actgccactgaccgaggtcagccctctcacagcactacctgttcactacacatacaggtc ctgagtgcgagcagagctccttccaaagccaaccccctctccatatacttcaactccgtc gaggaggccaaaccgggctctgtgattggctctgtgaggtcacatgacggcttcgagctc cctgaggatggtcacgtgacctacacgttggtgggcgggtcagaccgagacggaacgttc atggtggaccgtcagacaggtgacgtgtacctgacaagggagctggactacgagcgctcc gcccgctacacattacagatagaggtggacgacttctccacaacgttacccagcagccac ctggtgcagctggacatcgaggtggaggacagcaacgaccacgcgccccgcttcccggag gaccccgtaaccttggtgatacctgagaacatggagcctggggcgaccatctacaccttc caggcttcggaccaggacggatcagggcccaacagcctgctgacctactccatcctgcac cagtaccctgacctcccagacctcctgacccttcacccttccactggcgtcctgaccctt gcgcaggaactggaccatgaggtcacttcttccctcatcctggtcgtccaggcgacagac tccgccctgaacgccagccaacagcgctggggctcggtgacggcgagggtgtttgtgaca gacgagaacgacaatgctccagttattagctcgccttccgcggtcagcgtcatggaggac cagcctgtgggcttctttgttctctacgtcgtggcgcgagatgccgaccagggggagaac ggacgggtcagctacttcatcgagactgggaacgctggagggacgttcagcctcaacctt aatactggttctctctctatcctgaagcccatcgaccgggaggagcaggacctgttcaac ctgaccatcgtagcccaggaccacggggtaccagtgctctcgtccagccagctgctgtct gtccaggttatcgatgtgaatgatgaggtgccctggttccaggagaaccagtaccaagcc cagattacagagaaccagcctgcaggaaccactgttctggtggtgtcggcctctgacctg gaccaaggtaccaatggccagttgacatatggaggcatctctgaggagggtttcagcatt cacccagctacaggtgttataaccaccactaaagccctggacagagaggaacaggaacaa tatacactgacagtgtatgcccgagacggtggcgtgcctcctaactttgcccgggcatca gtgaggatccgggtgttggatgagaatgacaacgccccagcgttcagtagactgtactac agcctggaggtgcctgagaacatggaggctgttgagctgttcactctcagagctactgac ctggacactggggacagcggagagatgacctacaagattacagctggcgacccatcaggt gacttctgtatggacaggaagtcaggtgttctctccacctccagaccgctggatagggaa cgtagggccaggtacagtctgacagtgacagcccttgacgggggctctccggccctgagc agcacagccacagtagaggtcacgctcctggatgtcaacgaccacagcccccagttcacc agccccagctacaccgctgacctctctgaggacgttcctattggctccctagtgctggag gtctctgctactgacctggacgaagggtctaacagccaggtgctatacttcctgtcgcgt ggttcaaagggcatgttcatcattgaccagcacacgggacatgtcattaccgccgctccg ctcgaccgggaacgaaccgcgtcgtacactttcgatgtctgcgccatagactcgtccccc gccagccctcgcaactccaccgccacggtcaacgtgtatgtacaggacgtgaacgacaac gctccattcttcatccaggaccccctggtcatcaacatctctgcctccagtgtctcctct catcgcgtcctggccaccatgcgggcggaggaccgtgattttggggccaacggctcagtg ttctaccgcttcgccagccctgtccggggcttcaccatcaactctctgactggggacatc caggctacagagaagctgcagggactgacccagggccagaggactctgattgtagaggct atggaccagggtagcccagcccagtcctctctaggggtggtggtcatctacatcagagaa cagacctacaaggggatccgcttctcacgccacgctagagacatcagtctgcaagagaac gctgccaaaggtaccaccgtggtgcagactcaggcccagtaccctgatggatcccgtagt gggatcagttacagcatcttcagtggcaacacattacactcctttggaatcagctcctcc actggtgagatctgggtacagagctccatggggctggactatgaggagacccctagactc cgcctagtggtgaaggctgaaactgcatcctccagttccttcatggcggtcaacctgaac ctgcaggacgtcaatgacaacctgccacgcttccagcttcagaactatgtagcctacata cgagaggcacagggatatcatttccctatcatacaggtggtggctgatgacctggaccag ggccagaatagtcaggtgacctacagcctgcagtcatcgtctctcagcggcctgttcaag atcgacccgctgaccggaagcatcaccaccgccgctatcatggaccgagagatctggaca caaaccaagctggttgttacggcgacggactggggcacgccacgattggccggctcggcg accctcactgtgatcatcgtggacctcaatgacaacagtcctacaatccccctgccgcgc gagatcagagtaccagagaacactctgattggctcggtaataacccaggtgacaggaaat gacgtggactcaggccccgccctgtcctacaccctccacctggacccgtcctcccagggc gtgtttgggatccaccgctatgggggcggggtgtctctgaccgcccctctggactatgaa gataggacctggtacacgctgactgtcagggctactgactccaaacaccagactgaagct aacctcactatactggtggaggatgtcaatgataacgctcctacgttcacacaggatctt taccaggtgactctggcagagcactccccagctggcagtgcagttgtcacagtgacagcc acggatcgtgactctggagagaacggccgtgtcacctacaaagtgatgtcatcaacccgg gacatcttctacatcgaccccagcaatggtaccctgttcatcacccagcaggcagagttg aactctgagaatccttctatcctagtggtaatagagtccagagacatgggaacaccagcc ctctcctccatcgctactgtacaggtccaggtgactgacgtcaatgacaatgcacccgtc ttccaccaatcagagtacagagccacggtttcagaggacggccttccgggcgccaccatc ttgaccctggaggcaaccgacggtgacgcgtcacgcgacaactgcggctttgacttcacc atagccagcggaaacgaaggcaatgccttccagatcgagagcagcgtgcgcttcctggaa ggacggggcttccagacagtaggcagcctggtattgaccggtgaggggttggacttcgag gcggtgtccagttacaacctgaccgtggtcgtgtcggaccgcggcgtgccccagaggagc tcggctgtctctgcgctgatcagtgtgacggatactaacgacaaccctccggcgttcagc agggcagagtacagtgtggtgctgagtgaaggagcagccacagggactgaggtccttagc ctgtctgcaacagacccagactcctcggccgtagggaaggtgcagtacctaatcagctct ggggatgagacgggtatgttccaggtggaccgctggaccggagccctgaggctgcagaga ccactggacagtgagagacaggcatcctatgtgatcattgtgcaggcgtcagatggacag ggtcactatgcactggctccagtcactgtggaggtgaaggacattaatgacaacagacct tacttccctctgcccatcctcaccgccagcgtcagagagaaccagcctcacaacgccctt gtcaccatgctgcacgccatcgaccaggacacgggagtcttcggacagctgaggtactac atgttggacaagactggagaggggaaagacgccttcctggtcaaccagatgtcaggcgag gtccggactcgctccaccttcgactttgagaaggtcaacttgttcaactttgtagctctg gccatggatgcagggaactactctgccacggtgaccgtccaggtgtacgtgacgggggag gatgagtacgaccctgtgttttccgactcagagttctccttcctggttcctgagggggca aagaagggccagagcatcggtcaggtgacagccagagacgaggacgagggggtggacggg attgttctgtactccctagctgacccctcgccctacttccaggtcaatgcatcgacgggc gtggtttccctgaagatggacagccacgtccgacacctgggcaggtccaagagggaggtc cgtgtgatgacccttgacctgaaggcccacagccctttggagacgtcccgtgtggccacc gcccgcctcaccgttgacgtgacacacacctcctttggcgtggcgtcggacatgaacctg ctgctggtcagcgtgatcgctgtgtccctgggagccatcctcatcctgatcttcatcgcc atggctctgttctgtgtgagactgagacgtcagaggaaggagcagcagagtcgctgcaga cctccagcctctcccggccacggcaccatgctgcacaaactagaggagactaaagtcact ggcaccgaccggaacgaccgcatctacaaccaggccttaccagggtatgcttccgaccaa acagggagtggtgggggagggccatacccccgcgggggctccctggatccatcccactcc agcgggcgtggctcagcggaagcggcggaggacgatgagatccggatgatcaacgagtac ccccgtgtctcctccatctcttcatccatgcaggaacacatctcagcccgcgggccagac tctggtatccagcaggacgctgaccagctgtctgatgtctcctgtgagcccaacatggac gccaaccagtggttcaaggccaagaagctggccagtctcagtgggactctgctggctggc caggtgccagtctacagggaggatggaggaggttatctgggggtagggagggggctgaac atttcccatcctaaagactatgccttcccagtggatggtaaacccactgtggacggctct ctcacagccatagtggccagtgacgaggagctgaggggcagttataactgggactacctg ctgaactggtgcccacagttccagccactagcaaacgtcttcacggagatagcgaggtta aaggatgagacggccccccctaaccctcgcagaccgctccagcacaaagccaaggcagac cccaaaccccctcgcattgaccccccgcccctaatcacctccatagcccaccccggggcg aagacagtcccagtcaagcctgctcccgtcaagccctctgtggggaggtcctccttcccc cacctggcctccctacggaggtcccccatcagtcacgagggctccccctcctcagtagcc atgtcccccagcttctccccctccctgtcccccctggccgcccgctccccagccatcaca cctttcggcgtcacccagggcccctcagcctccatgatcagcaccactgaacacagcatg gagcacagtgaagaggccgagatgaggatatag

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