Coregonus clupeaformis (lake whitefish): 121568324
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Entry
121568324 CDS
T08357
Name
(RefSeq) serum response factor isoform X2
KO
K04378
serum response factor
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121568324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121568324
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
121568324
BRITE hierarchy
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
121568324
NCBI-ProteinID:
XP_041734821
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Position
1:complement(834719..901434)
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AA seq
612 aa
AA seq
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MSCVVILLTRAPAVGWRIQKPGPLNRMLPSQAGSAPSGNGSASVRGNTGHGSGVIGSGIR
PVLVRAVQTTTGVRDSTGAVGMLGGNGPEVGPRGGARPVSGTGLTTLQTAGQGGIGSLNT
GVGVHGGSRYDPDKKCAPMGCSGSDADSDSGDDDDTMGSIRDNRRGVKRERLEMEAAVTG
QGTGVPPGAYGVVPGGVAGAKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYE
LSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRNDPSTDQ
RMSATGFEETDLTYQDQLKPAFTVASLPGTTSTHAPTAPTTSTSMQVSSGPSFPITNYLA
PVSASSNVNANGTILKTTGASGGQVMQLPSGFTFMSAGTPLPPGTPTIPLSQLHQHSLAI
QGQTLTSSQLTQQGQQAVFRFPAAVSLGEGMTQQLQAIQVHPTTHANDSSSEISQTSSVS
TATIVTSSVPTSMAGHMMYTSPHTVMYASTPTLADGGLAVLNTFSQGPSAMQVSHGQCQD
TGETTLDYSRLRWDTGAVPQVFLTAPSGTMQIPVSAVQLHPMVISQQSSGNSSNLTELQV
VNLDNTQSAKND
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgagctgtgttgtaattttactaacacgcgctccagcagtcggctggcgaattcagaaa
ccgggtcctctaaatagaatgttaccaagccaggctggatcagcaccatctggaaacggg
tcagcgtctgtcaggggtaacacaggtcacggttctggggtaattgggagtgggattcgc
ccagtgttggtcagagcagtgcaaacgacaactggggtcagagacagcaccggtgcggtt
gggatgttggggggcaatggtccagaagtgggtccaagaggtggggcaagaccagtgagc
gggacgggactgacgactctacagaccgccggccagggaggcatcggaagtctgaacacg
ggagttggggttcacggaggcagccggtacgacccggacaaaaagtgtgcgccgatgggg
tgcagtgggtcagacgctgattcggactcgggggatgatgacgacacgatgggttcaatc
agggacaacagaagaggtgtaaagcgggagagactggagatggaggctgcggtgacaggg
caggggaccggggtaccaccgggggcttacggtgtagtccctggaggtgttgctggcgca
aagccagggaagaagacacgtggacgcgtgaagataaaaatggaatttatcgacaacaag
ttgaggcgatacacaacttttagcaagaggaagactggcataatgaagaaggcctatgag
ctctccacgttgacaggaacccaggtcctgctactggtggccagcgagacaggccacgtc
tacacgttcgccacgcggaagctccagcccatgatcaccagcgagacgggcaaggccctc
atccagacatgcctcaactctccggactccccgccccgcaatgacccctccactgaccag
cgtatgagcgccacgggcttcgaggagacggacctcacctaccaggaccagctaaagcct
gcgttcacggtggccagcctcccgggcaccaccagtacccacgcgcccacggcccccacc
acctccaccagcatgcaggtgagcagcgggccctccttccccatcaccaactacctggcg
cccgtctcggccagcagcaacgtcaatgccaacggcaccatcctcaagaccaccggtgcc
tccggagggcaggtcatgcagctgcccagcggcttcaccttcatgtcagcaggcacacca
ctcccccccggcacccccaccattccgctcagccagctgcaccagcactccttggccatc
caggggcagacgctcacctcatcgcaactgacacagcagggccagcaggccgtcttccgc
ttccccgctgcagtctccctaggggaagggatgacccagcagctgcaggccatccaggtg
caccccaccacacatgctaatgacagcagctcggagatctcccagacctcctctgtctcc
actgcgacaatcgtcacatcgtcagtgcccacgtctatggcgggtcacatgatgtacacc
agcccccatacagtgatgtacgcgtccacgcccacgctggccgatggtggcctggctgtg
ctcaacaccttttcccagggcccctcggccatgcaggtgtcccatggacagtgccaggac
acaggtgagaccacgctagactacagtaggctacgctgggacacaggtgctgtccctcag
gtattccttacggcaccctcaggcaccatgcagatcccagtctcggcagtgcagctacac
ccaatggtgattagtcagcagtcgagcggcaacagcagtaacctgacagagctacaggtg
gtcaacctggacaacacacagagcgctaagaacgactga
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