Coregonus clupeaformis (lake whitefish): 121568367
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Entry
121568367 CDS
T08357
Name
(RefSeq) short transient receptor potential channel 4
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121568367
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121568367
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_4
PKD_channel
Ank_5
Egg_lysin
YVC1_C
BAR_4
Motif
Other DBs
NCBI-GeneID:
121568367
NCBI-ProteinID:
XP_045072760
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Position
6:complement(37300631..37331132)
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AA seq
933 aa
AA seq
DB search
MSQLYYRRTDNSSYRDRIPLRIVRAESELSGLERNYLGAVEKGDYASVKQALEEAEIYFR
ININCIDPLGRTALLIAIENENLEIIELLLTYNVCVGDALLHAIRKEVVGAVELLLNHKK
PSGEKQVPPILLDKQFSDFTPDITPIILAAHTNNYEIIKLLVQKGVSVPQPHEVRCNCME
CVSSSDVDSLRHSRSRLNIYKALASPSLVALSSEDPFLTAFQLSWELQELSKVENEFMSE
YEELSQQCKQFAKDLLDQTRSSRELELILNYRDDINPILDENTNDLARLKLAIKYRQKEF
VAQPNCQQLLASRWYDEFPGWRRRHWAGKFLTCVFIGLLFPVFSLCYLVSPKSHYGYFIR
QPFIKFICHTTSYLTFLFLLLLASQHIVSTDPNRQGPTPTVVEWMILPWVLGFIWTEIKQ
MWDGGFQDYIHDWWNLMDFVMNSLYLATISLKIVAYVKYSGFRARNEWQMWHPTLVAEAV
FAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFY
YETDKGLKGCKGIRCETQNNAFSTLFETLQSLFWSVFGLISLYVTNVEADHQFTEFIGAT
MFGTYNVISLVVLLNMLIAMMNNSYQHIADHADIEWKFARTKLWMSYFEEGGTLPSPFNI
IPSPKSIWYFICWIRKHIFKITRAKKTETFGTIGRRAAINVRINHQYQEVLRNLVKRYVA
AMIRDAKTEEGLTEENFKELKQDISSFRYEVLGMMKGKVGPGSGGVALAGSKPSEGAGAS
SLVYPDHSFKYSPKFPPAMPKTNMFHVTKSMLQQRAAPSFTSSSTSPSTSQGLNRLVNGS
VVPSLASTDTSSTAISSSSSTPSTKDRLARKDFPKDSCDFGLYSVSEEMGEADLEELDCI
GEWEEQGGARERTCTEKEENEEEGRVKREKSQC
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaactgtactaccggaggacagacaactcctcctacagggaccggatccctctg
aggattgtcagggccgagtctgaactgtctggcctggagaggaactacctgggagcagtg
gagaaaggagactatgcctcagtcaaacaggctctagaggaggcagagatctacttccgg
atcaacattaactgtatagacccgttgggccgcacagctctgctgatcgctatagagaat
gagaacctggagattattgagctgctgctcacctataacgtgtgtgtcggtgacgctctg
ctacacgccatccgtaaagaggtggtgggggccgtggaactgctgctcaaccacaagaag
cccagcggggagaaacaggttcctcccatcctattggacaagcagttctctgacttcact
cctgacatcacacccatcatcctggcagctcacaccaacaactatgagatcatcaaactg
ctggtgcagaagggggtgtccgtgccccagccacatgaggtgcgctgtaactgcatggag
tgtgtgtccagctctgatgtggatagtctgcgtcactcccgctctcgtctcaacatctac
aaggcccttgccagcccatcactcgtggccctctccagtgaagaccctttcctcacagcc
ttccagctctcctgggaactacaggagctcagcaaggtggagaatgagtttatgtcggag
tatgaggagttatctcagcagtgtaaacagtttgccaaggacctgttggaccaaaccagg
agctccagagaactagagctgatcctgaactacagagatgacatcaaccctatactggat
gagaacaccaatgacctggccagactcaaactggctatcaaatacagacagaaagagttt
gtagcccagcccaactgtcagcagttgcttgcgtctcgttggtacgatgagttccctggg
tggaggcgtcgtcactgggcagggaaattcctaacctgtgtcttcatcggcctcctcttc
cccgtcttctccctttgctacctggtctctcctaagagccactatggatacttcatcagg
caacccttcatcaagtttatctgccacacaacgtcgtatctcaccttcctgttcctgctg
ctgctggcctctcagcacatcgtctctacagaccccaacagacaggggccgactcctact
gtggtggaatggatgatactgccctgggtactgggcttcatctggacagagatcaaacag
atgtgggatggaggattccaggactatatccatgactggtggaacctcatggactttgtt
atgaactctctgtacctggctaccatctctctgaagattgttgcctatgtcaagtacagc
ggcttcagggccaggaacgaatggcagatgtggcatcctaccctggtagcagaagctgtg
tttgccatcgctaacatcttcagctccctccgcctcatctctctgtttacagctaactca
cacctgggacctctacagatctctctgggcaggatgctgctggacatccttaaattcctg
tttatctactgcctggtgctcctggccttcgctaacgggctcaaccagctctacttctac
tacgagacagacaagggcctgaagggatgcaagggcatccgctgcgaaacacagaacaac
gctttttcaacgttgtttgagacgctccagtctttgttctggtctgtctttgggttgatc
agtctgtatgtgaccaacgtggaggcagaccaccagttcacagagtttataggggccacc
atgtttggaacctataatgtcatctctctggtggttctactcaacatgctgatcgccatg
atgaacaactcctaccaacacatcgctgatcatgcagacattgagtggaagtttgcaaga
accaagttgtggatgagttactttgaagagggagggactctgccttctccattcaacatc
atccctagccccaagtcaatctggtacttcatctgctggatcaggaaacacatcttcaag
atcaccagggccaagaaaacagaaacatttggaacgatagggagacgggctgctataaac
gtaagaataaaccaccagtatcaggaggttttgaggaacctggtgaagagatatgtagca
gccatgatcagagatgccaagacagaggaaggactgactgaggagaactttaaggagctg
aagcaggacatctccagctttaggtatgaggtcctggggatgatgaaggggaaggtgggg
cccgggagtgggggcgtggctctagcgggaagtaaacccagtgaaggggcaggggcctcc
agtctggtctaccctgaccactccttcaaatactcccccaagttccccccggccatgcct
aagaccaacatgtttcacgtcactaaatccatgctccagcagagggcagccccctccttc
acctcctcctccacatccccttccacctctcagggcttgaaccgactggtcaacggctct
gtggtaccctctctggcctccactgacacctcctccaccgccatctcctcttcctcttcc
actccctccaccaaagacagactggccaggaaagactttcccaaagacagctgtgacttt
gggctctactctgtgtctgaggagatgggagaggctgacctggaggagctggactgtatt
ggagagtgggaggagcagggtggagcgagggagaggacatgtacagagaaggaagagaat
gaagaggaggggagagtgaagagagagaagagtcaatgttaa
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