Coregonus clupeaformis (lake whitefish): 121568813
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Entry
121568813 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: retinoic acid-induced protein 1
KO
K19749
retinoic acid-induced protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121568813
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
121568813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H_2
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
121568813
NCBI-ProteinID:
XP_041735183
LinkDB
All DBs
Position
7:2844676..2857653
Genome browser
AA seq
1989 aa
AA seq
DB search
MYPQSHLHYPQHPPSPSPSSSSYMEKCSPMPHCYKGYSMPPSSQYARQMGSHSSLKQGGY
RPPPQNSYSYQQTPSRGGYDFSQPQQNYCLSELSVRSPEQYYQTCSPASSHSPARSVGRS
PSYSSTPSPLMTNPESFQYSQPPMTPGAASSSSSSSAGLQDQGLLMPPRSHPSPSPNVAH
PTPQHSYTQGVSMKERFSEKLLANPSLWSLNALTSQVENISNNVQQLLLSEAMVANKKGG
KRNSSNSTGSSGGGSSKKEEEYKGVPGGPEGQHGGGPMQDPYSTNQHQLVPMEMQEGGYS
SSSDEQLERGYYYCGQGRSPAQAPNNTHLGLDTASSCSMTSPDDMSTRSGDSVSGLQSVA
SRDNLTPDPRSQGGHDPPQTPMKSVGDERSPLSVTVPSPMKQESQSPPDIQRLGMPLKEN
FEELAWTEKMADYEDDGMKKDSDSERDCRGGDDVTDTSEKQEKWPEDEKGPALYSKINKA
VTEGKSYCCNENMYHEIQNKYDRGKGDSADKSPSLSDSSHKGDLGQEMKSEAFKSESPTD
SESSVKTSPFISRGDLDQNQYLTEKEDSSENISPTPRGKALDERLSASEKRESREEEEED
EEGEEERQQDSISPPLSTEEREGEESESLPSTEEVLNNRTSPQKEPSGELCSRTEGQSLA
QPYRNTEPAETETQAAQTDPTAAAAESPEMGSAICDTPPQSHSAMMVFSALSEIATPPAP
AHTRDHIDRSDSNVLEPDSPQLPGKSILHSAPSWANTPPSPKKGDEDMELGISCPSAVTP
SAKPETVAPSAHPQAFGRKHGRGRRRLMHSGVEFRRQLSVEREGESASLPPQKPCMPSSK
SPLFSDQIDMAAHQDIIMTSETPKLLVEGSRSRMCTRSFNTQDTTPKDPQPPERRKPGRK
PGSKPGPKPGLKSGLKPGPKPGLKPGPKLGPKPSLKPGPKPGMKPGSKPGPKPGLKPGPK
PGPKPGLKPGPKPGPKPGPKPGPKPTEGAPRGRPRGTGSKLKLAQQEGPIQPITGGPGRG
QKSLSINSQQGDGNQEVKAPGKDGKNMVLRSRKPPQKEKEQSEGILTQTLTGITKPNAVL
ENEERTSIEQALPVFPNQTDTSVTDTSKTDTSVTYISKIDTSVTDTSVKDTSVTDTSKID
TSVIDTSKIDTSVTDTSVTDTSVTDTSVTDTSKTDTSIPVAPPEKPKEPTVAVPPITAPV
PPLKRKPSPLPLEPPVKKKRGPKPKPKPQPQQPQPETPQSDQSNQSNQANQSNQSNQANQ
PPLVKPKEMGVRGPKRRLKRGRHLKASLITVLTKDNPPLTMTDCDVVSEMPSVPSQCPTK
TKYLPPRKGRGLKYEAMVQKINLGTGSKKHLPTPQPESTEAIVEEVTSKPVSLSISEESE
APVVVVSAPEVTREEVAGDEWSSTGVQNTEQEGGVQQNTGEGVQPESLPAGVPDAAAASD
ANKPTRTKRRKWAMVESTDATVVAMETGSLIINTPRLAKQRAIKNNHEMHLKQRRKRKGG
QPPSEGPVADEKVGTTTGEQQTETEAQTPTDTTLTTMPDLPAGPGEITDSPQVIATEIIQ
LPPSKRGRKPSSSPSKKRGRGRAPGEQQRSKPLKVHKKPGPKKGIKDAMEVIEAVVKAAG
REARLKKKKSKKESPAVSEEKQLEPSLKQVLSKTPKSGIKHSFCPYVRIDSSRDFASLCT
IVNRRNEELKMVFQKPRKKSSDKIKNPVTVAKAIPISSALLQGPLVNKTLIDRCLTCCLC
GKPANYRELGDLCGPYYPEDSIPRKILSARHIEPPRENQEKTTSSNSSIEEPSSSTPKSE
GDPSSEKEGSKKGDMETVTKEGSSSTSGGGHHHQPHPHHWRPRRAERAPAEGGSTHRPTL
RDRFRRMQQLQEERRAAEATASGQEGISGGGGLLQRLQGEAEAKEHWAHENCAIWTNGVI
MVAGRLYGLKEAVHTSTETSCSKCQRVGASISCCWKGCPHKYHYICAKEIGCMFQEDNFS
LKCPKHEAL
NT seq
5970 nt
NT seq
+upstream
nt +downstream
nt
atgtacccccagagccacctccactacccccagcatcccccgtccccctcgccctcctcc
tcctcctacatggagaagtgcagccccatgccccactgctacaagggatatagtatgcca
cccagctcccagtacgctaggcagatgggcagccacagcagtctgaagcaggggggatac
cgaccgccaccccagaacagttacagctaccaacagactccctccaggggtggctacgat
ttcagccagccccagcagaactactgtctgtccgagctgtccgtcagatcccctgagcag
tactaccagacatgtagtcccgcctccagccactcccctgcacgctccgtaggacgctca
ccctcctacagctccaccccttcccctctgatgaccaatccagagagcttccagtacagc
cagccaccaatgaccccaggggcggcttcttcttcctcctcttcctcagcgggtctgcag
gaccaggggttgctgatgccgccgcgctcccacccgtccccgtcccccaacgtggcccac
ccaaccccgcagcacagctacacgcagggggtctccatgaaggagcgcttctctgagaag
ctgcttgccaaccccagcctgtggagcctgaatgccctcacctctcaggtggagaacatc
tccaacaacgtgcagcagctattgctctccgaggccatggtcgccaacaaaaaggggggc
aagcgcaacagcagcaatagcactgggagcagtggaggcggctcctccaagaaggaagag
gagtacaagggagtgccaggaggccccgagggtcagcacggtgggggccccatgcaggac
ccctacagcaccaaccagcaccagctcgtccccatggagatgcaggaggggggatactcc
agtagttctgacgagcagctggagagggggtactactactgcggccagggcaggagccca
gctcaggcccccaacaacacacacctgggcctggacacggcctcatcctgctccatgacc
tctccggacgacatgtccacccggtctggtgactctgtgtccggcctgcagagcgtggct
tccagggacaacctgacccctgaccccaggtcacagggtggtcacgaccccccacaaacc
cccatgaagagcgtgggtgacgagaggtcccccctgagtgtgacggtccccagccccatg
aagcaggagagccagtcccctccagatatccaacgtctcggcatgccactgaaggagaac
tttgaggagttggcctggacggagaaaatggcagactacgaggacgatggcatgaaaaaa
gactccgacagcgagcgtgactgcagaggcggcgatgatgtcacagacacctccgagaag
caggagaaatggccggaggacgagaaaggcccagctctgtatagcaagatcaacaaagca
gtgaccgagggaaagagctactgctgcaacgagaacatgtaccatgagatacaaaacaaa
tatgacagaggcaaaggggactcggcggataagtccccaagcctctcagactccagccac
aagggagacctgggccaggagatgaaatcggaggccttcaaatccgaatctcccaccgac
tctgagagctcagtgaaaacatcaccctttatttccaggggtgatcttgaccaaaatcaa
tatttaacagagaaggaagacagctctgagaacatatcccctaccccccggggcaaggct
ttggatgagaggctctctgcctcagagaagagagagagcagagaagaagaagaggaggat
gaggagggggaggaggagaggcagcaggactctatatctcctcctctgtctactgaggag
agagagggagaagagagtgagagcctgccatcgactgaggaggtcctcaacaatagaacg
agcccacagaaggagccttctggagagctgtgcagcagaacagaaggccagagcctggct
cagccttaccgtaacacagagcctgcagagacagaaacccaagcagcacaaacagaccca
acagcagcagcagcagaatccccagaaatggggtcagccatttgtgacactccaccccag
tctcactcggccatgatggttttctcagctctcagtgagatagcaacacctccagctccg
gctcacaccagggaccatatcgatcgcagcgattccaacgtgctggagcctgactcccct
cagctgccagggaagtcgatactgcactcagcgccctcctgggccaacaccccaccctcg
ccaaagaaaggtgatgaggacatggagctgggcatcagctgcccaagcgctgtgaccccc
tcagccaagccggaaaccgtggccccatctgcacacccgcaggctttcggccggaagcac
ggccgaggcaggaggagactgatgcactcaggtgtggaattcaggagacagctgagtgtg
gagagagagggggagagtgcctctttgcccccccagaaaccctgcatgccctccagcaag
agtcctctgttctccgatcagatagacatggccgctcaccaggacataatcatgacgagc
gagacacccaaactgctggttgagggctcccgctccagaatgtgcactcgctcgttcaac
acgcaggacacaacccctaaggatccccagccccctgagagacggaaaccagggcgaaaa
ccaggttcgaaaccaggcccaaaaccgggactgaagtcagggttaaaaccagggcctaaa
ccaggactaaaaccaggaccaaaactaggtccaaagccgagtctaaaaccaggaccaaaa
ccaggtatgaagcccggttcgaagcccggcccaaaaccaggtttaaaaccggggcctaaa
ccaggcccaaaaccaggtctaaaaccagggcctaaaccgggtccaaaaccaggaccaaaa
ccaggtccaaaaccaactgaaggagcaccccgtggtcgtcccaggggcacaggctctaag
ttgaagttggcacaacaggaaggtcccattcaacccatcacagggggtccaggaagaggc
cagaagagcttgagcatcaacagtcagcaaggtgatgggaaccaggaagtgaaagctcca
ggcaaggatggaaagaacatggtcctgagatccagaaagcccccccagaaagagaaggag
caatctgagggaatcctaactcaaaccctgacaggtataacaaagcccaatgcagtgtta
gaaaatgaggaacgtacgagcatagagcaagccctccctgtctttcctaaccagacagac
accagtgtaacagacaccagtaaaaccgacaccagtgtaacatacatcagtaaaatagac
accagtgtaacagacaccagtgtaaaagacaccagtgtaacagacaccagtaaaatagac
accagtgtaatagacaccagtaaaatagacaccagtgtaacagacaccagtgtaaccgac
accagtgtaacagacaccagtgtaaccgacaccagtaaaacagacaccagtatacctgtc
gctccacctgagaaacctaaagaaccgactgtagctgtacctcctataactgcacctgta
cctccactcaaaagaaaacccagtcctctgcctctagaacctccagtgaagaaaaagcga
ggtccaaaaccaaaaccaaaaccacaaccacaacagccacagcctgaaactccccagtct
gaccagtccaaccagtccaaccaggccaaccagtccaaccagtccaaccaggccaaccag
cctccattagtcaaacccaaggagatgggtgtccgaggccccaagaggaggctaaagcga
ggcagacacctcaaggcctctctgatcactgtgctgaccaaagataaccctcctctcacg
atgactgactgtgatgtggttagtgaaatgcccagtgtcccttctcagtgtcccactaaa
accaagtacctccccccgcgcaaaggcaggggtctgaaatacgaggccatggttcagaaa
ataaacttgggcactggttcgaagaaacacctgccaacaccacagcccgagagcacagag
gcgatagtggaggaagtgacatcaaagcctgtgtcgctgtccatctcggaggagagcgag
gccccagtggtggtggtgagcgcccctgaggtgacacgggaggaggtagcaggggatgag
tggagctccacgggggtccagaacacagaacaggagggaggggtgcagcagaacaccggg
gagggggtgcagccagagtcactcccagcgggggtgccagacgctgcagcggcgagcgat
gccaacaaacccaccaggaccaagaggaggaaatgggccatggtggagagcacggacgcc
acggtggtcgccatggagacgggaagcctgatcatcaacacgccgcggctggccaagcag
agggccatcaagaacaaccacgagatgcacctgaaacagaggaggaagaggaaaggagga
cagcctccctcagaggggcctgtggctgacgagaaggtagggacaacaacaggagaacaa
cagacagagacagaggcacagacacccactgacacaacattaacaacaatgcccgatcta
ccagccggcccaggtgagatcacagacagcccgcaggtgatcgccacagaaattatccag
ctgcctccctccaaacgagggaggaagccctcttcatccccgtccaaaaagagagggaga
ggcagagccccaggtgaacagcagagaagcaaacctctgaaggtgcacaaaaaacctggt
cctaaaaagggaatcaaagacgccatggaagtgattgaagcagtggtgaaggctgcaggg
agggaggccagactcaagaaaaagaaatcaaaaaaggagagtcctgcagtgtcagaggaa
aagcagctggagccctctctcaaacaggtactgagcaaaacccccaaaagcggaatcaaa
cattccttctgtccatatgtgcgcatcgacagctccagagacttcgcctctctctgtacc
atcgtaaacaggcgcaatgaagagctgaagatggtgtttcagaagccccggaaaaagagc
tcagacaaaattaaaaacccagtcacggttgccaaggcgatacccatctcctcagctttg
ctccaggggcccttggttaacaaaaccttaattgacaggtgtctaacgtgttgcctgtgt
ggaaagccggcaaattaccgtgagttgggggatttgtgtgggccctactacccagaggat
agcatccctcgcaaaatcctgtcagcaagacatatagaacccccgagggaaaaccaagag
aaaacaacaagctccaacagtagcatcgaggaaccaagcagcagcaccccaaaaagcgaa
ggagaccccagctccgaaaaggaaggcagtaaaaagggggatatggagacagtcacaaag
gagggcagtagtagtactagtggtgggggtcaccatcatcagccccacccccaccactgg
cgccccaggagggcagagagggcacctgcggagggcggaagcacgcaccggcccacccta
cgggataggttcaggaggatgcagcagctccaggaggagaggagggctgcggaggccaca
gctagtggtcaggaggggatcagtggaggaggaggcctgctccagagactgcagggggag
gctgaggctaaggaacactgggcccatgagaactgtgctatctggaccaatggggtcatc
atggtggccgggaggctgtacggcctgaaagaggctgttcacacttccacagaaacgagc
tgctccaagtgccagagagtgggtgcgtccatcagctgctgctggaaaggctgccctcac
aaataccactacatctgcgccaaggagataggctgcatgttccaagaggacaacttttca
ctgaaatgtccgaaacacgaggctttgtaa
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