Coregonus clupeaformis (lake whitefish): 121568844
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Entry
121568844 CDS
T08357
Name
(RefSeq) eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1
KO
K03267
peptide chain release factor subunit 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121568844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121568844
03012 Translation factors [BR:
cclu03012
]
121568844
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121568844
Translation factors [BR:
cclu03012
]
Eukaryotic type
Release factors
121568844
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
PAM2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
121568844
NCBI-ProteinID:
XP_041735230
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Position
7:complement(6590472..6600948)
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AA seq
583 aa
AA seq
DB search
MDPRDAAPDSWEQEDDVEAPVDGKLDSEFAALNVNAKPFVPNINAVEFVPSFFQKGPSED
PDSGADVQPVVATMEAAKTAASVENGDSEMTTEESWDLKGAEPNEEEPGGGPGGDGGPIV
VEEILEEEVMEEEEEEEEEVPIMPKVVALPPDAPKKEHVNVVFIGHVDAGKSTIGGQIMY
LTGMVEKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTI
LDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI
ILVNKMDDPTVNWSLERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEPVESC
TWYTGLPFIPHLDSLPNLNRASDGPVRLPIVDKYKDMGTVILGKLESGSISKAQQLVMMP
NRHTVEVLSLLSDDVETDDAAPGENLKLRLKGIEEEEILPGFILCNAENLCHSGRTFDAQ
IVIIEHKSIICPGYNAVLHIHTCIEEVQITALICLVDKKSGEKSKTRPRFVKQDQVCIAR
LRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVAERD
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggacccgagagacgctgcccctgattcctgggaacaagaggatgatgttgaggccccg
gtcgacgggaaactcgattccgaattcgctgccctcaacgtgaatgccaaaccgtttgtc
cccaacataaatgctgtcgaatttgtcccgtccttctttcagaaaggcccctcggaagat
cctgattccggtgcggacgttcaaccagttgttgccaccatggaagccgcaaaaactgca
gcctcggtggagaatggcgactctgaaatgaccacagaggagtcgtgggacctgaaaggg
gcggagcccaatgaggaagaaccaggaggagggcctggtggcgacgggggaccaatagtt
gtcgaggagattctggaggaggaagtcatggaggaggaagaggaggaggaggaagaagtg
ccaatcatgcctaaagtggttgccctcccaccagacgcgcccaagaaggaacatgtgaac
gtggtgttcatcggtcatgttgatgctggcaaatctaccatcggaggacagatcatgtat
ttaacgggcatggtggagaagagaactctggagaagtatgaaagagaagccaaggagaag
aacagggaaacctggtacctctcctgggctctggacactaaccaggaggagcgagacaag
gggaagactgtggaggtgggccgagcgtactttgaaactgagaaaaagcactttaccatc
ctggatgcgccaggccacaaaagctttgtgcccaacatgatcggaggagcttcgcaagct
gacctggctgtactggtgatctcggccaggaagggagagtttgagacgggctttgagaag
ggtggacagacacgggagcacgccatgttggccaaaacggcgggggtgaagcatctgatc
atcctcgtcaacaaaatggacgaccccacagtgaactggagcctagagaggtacgaagaa
tgcaaggagaaactagtgccatttttaaagaaggttggcttcaaccccaagaaagacatt
cacttcatgccctgctccggcctcacaggagccaacctcaaggagcctgttgagtcgtgc
acttggtatacagggttaccattcattccacatctggacagtttgccaaacttaaacaga
gcgagcgacggaccagtcagattacccatcgtagacaaatacaaggacatgggtactgtt
atcctggggaaactggagtcggggtccatcagtaaagcacagcagcttgtcatgatgcca
aacaggcacacggtggaggtgttgagcctgctgagtgatgacgtggagacagatgatgct
gctcctggagagaacttgaagctgagactgaagggcatcgaggaggaggagatcctgccg
ggcttcatcctctgtaacgctgagaacctctgccactctggacgcacctttgacgcccag
attgtcatcattgaacacaagtccattatctgccctggttacaatgcagtcctccacatc
cacacctgcatcgaagaagtgcaaattacggccttaatctgtctggtagacaagaagtct
ggagagaaaagtaagacgcgaccgcgcttcgtgaaacaggaccaggtgtgcatcgcccgt
ctgcgcaccgccggaaccatctgccttgagaccttcaaagacttcccccagatgggacgg
ttcaccctacgggatgaaggtaaaaccattgccatcggtaaggtgttgaagctcgttgct
gagagggactga
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