Coregonus clupeaformis (lake whitefish): 121568889
Help
Entry
121568889 CDS
T08357
Name
(RefSeq) sorbin and SH3 domain-containing protein 1
KO
K06086
sorbin and SH3 domain containing protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03320
PPAR signaling pathway
cclu04520
Adherens junction
cclu04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
121568889
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
121568889
03320 PPAR signaling pathway
121568889
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
121568889
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
Src homology (SH) domain-containing proteins
Other SH2 and SH3-containing proteins
121568889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_9
SH3_1
SH3_2
Sorb
DUF4122
Motif
Other DBs
NCBI-GeneID:
121568889
NCBI-ProteinID:
XP_045077186
LinkDB
All DBs
Position
1:complement(41974785..42080263)
Genome browser
AA seq
1334 aa
AA seq
DB search
MDGKRMRFSQSPVLGPLNQPIVPVRNTEKSKDWYKNMFKQIHRIPEPVEENPYRPTYIFP
ESYDPRQMKTTDDGHSPNGFVEDVKGVPRSKSAAEVDHRLSIPVPTRSSSLKPSKRNKWE
PPDKKVDTRKYRAEPKSIFEYEPGKSSVLKLERKTQDISPEDVHLENEPWYRFFSEMEFD
KASAPSFSPLETPSDLQQYSGCKAVHSEVEKDEGSSGSEPAAPECDRHVYKNVLEGGDIP
LQGLRALNKRHASTSSKVDYQGGNGYIISPCSSVNSRSVIASNALGYQCKNKKPLSAAKA
CIPQILPSKFKHKLIPPSDDSQDRRTAPARHPKAHSFEDIYTGSTGAEAQESGLNSNTHK
NSNGLPLDSETGLKNGSPATRRSTSEFSTLYRNMHSIQRPSCSVGSSPHGSVRSLTCLFE
KVGVNGIDREGDEAGGNIPRREAVSSRVSEFELITQRSSPSPTRSSSMPTLPTGQSLTHN
HSPADLFMASAVSAESLLVTDPGHARLLEGCPLEDTEGKAARDEAFLSGSEIVEEVASSE
YSGTLRAESLSGTEAETEQHGPTEKAPVPTEKPPEVTISRTSNSPPSPVTPSAPPHNLHN
HHHLKPSSKCKGSCPASYTRFTTIRRHERQQEAMAQQDKLSTQEKIKNSSSLPSNHFLMG
PAPFRVRRSLQSHQAKKTLSATKVMAGQTSQTHFYDPRPLIPQRLSSLEVLERLGNGEGA
PSDSDNNLTNRGVLDANGNLLQPLAAHRRDSDYLTHVDLGDGQDDVVRRRHGDKEKILEE
QRRLKREQEEADTASRRHTGIVPTHHQFITNERFGDLLNINEADKRKSGSERTPALARFD
FRAETLKELPFQKGDIVYIIRQVDNNWFEGEHHGRVGIFPRSYVELLPPTEKAQPKKSAP
VQVLEYGEAIARFNFTGDTVVEMSFRKGERIILIRRVDENWYEGKVSGTNRQGIFPVTYI
EVHKRPRVKNGLDYPDPPIGQSPHRSLNASPQLNRVRNNRLTTSPLPLPRSPRRSVSPEV
HAISSEWISLTIGGSSPPTAPTPPLPPLPSVSYRWGEYLPPSKSASPVPPICGSPYCISP
MASPSASPLPPPYPPRPGSATPYLTFTPPQGEDFLLSPPSPRLSRSLSPCGGVGLESWLT
GASPLSILERELTEGEGAEGDRGTGRKALGSWRNSPAELVKNESDYHGRTSRSPVMLFDI
QDNNMNANSFAEAVCNEIMNIAETSVRYCSTLSPHPNDSVLHRLLPPLHPSKQSLIISQQ
PQSHSNSPEPSRLSCGIFQALYSYVPQNEDELELQEGDLVSVMEKCDDGWFVGTSKRTKH
FGTFPGNYVKEVNL
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atggatggcaagaggatgaggttctcacaatcccccgtcttgggcccactgaaccagccc
atcgtgccagtacggaacacagagaagtccaaggactggtacaagaacatgttcaaacaa
atacacagaattccagaacctgttgaggaaaacccataccgccccacctacatattccct
gaatcctatgatcctaggcagatgaaaaccacagatgatggtcactcccccaacggtttt
gtggaagatgtgaaaggggtcccacggtcaaaaagtgctgctgaagttgaccataggttg
tctatacctgtgccaacgcggtcctcttccctcaaaccttccaaaaggaacaagtgggag
ccccctgacaaaaaggtagacaccaggaagtaccgtgccgagcccaaaagcatcttcgag
tacgagccgggaaaatcgtcggtgctgaaactggagagaaagactcaggacataagtcca
gaagatgtacatttagagaatgagccttggtatagattcttttcagagatggagtttgat
aaagcgagtgccccctcttttagccccctggaaacaccctccgacctacagcagtactcc
ggttgtaaggccgtacacagcgaggtggagaaggacgaaggatcatccggcagcgagcca
gcggctccagaatgcgaccgccatgtttacaagaacgtcctggagggcggcgacattccc
ctgcaaggtctgcgggccctcaacaagcgccatgccagcacctcctccaaagtggattat
caaggtgggaatggctatataatttcaccatgctcttctgtaaatagtcgatcagttatt
gccagtaatgccctaggttaccagtgtaagaataagaagcccttatctgctgccaaagcc
tgcataccccaaatcctcccctctaagttcaaacataagctgataccccctagtgatgac
agccaggacaggaggactgcacctgccaggcacccaaaggcacacagctttgaggatata
tacacagggagcacaggagcagaggcccaggagagcggactaaactcaaacacgcacaaa
aactccaatggtctcccccttgactctgagactggtttaaaaaatggcagccctgcgact
agaaggagcacatccgagttctccaccctgtaccggaacatgcacagtatccagaggcct
tcctgctcggtgggctccagtccccacgggagtgtccgtagcctgacctgcctattcgag
aaggtgggggtcaatggaattgatagggagggggacgaggcaggggggaacattcccagg
cgggaggccgtgtcgtcgcgggtgtcggagtttgagctgatcacccagcgctccagccca
tctcccacacgctcctcctccatgccaacgctacccaccggccagagcctcacccacaac
cacagccccgccgacctcttcatggcgtccgctgtctcggctgagtcgctgctggtcact
gaccctgggcacgctaggctgttagagggctgccctcttgaggacacagagggcaaggcg
gcccgagacgaggcgtttctgtcaggcagtgagatagtggaggaggtggcatcctctgag
tacagtggcacactgagagccgagtccctctctgggactgaggcagagacagagcagcac
ggccccacagagaaagccccagtaccaacagagaaacccccagaggtcactatctccaga
acttcaaacagtcccccatcaccagtcaccccgtccgctcccccacacaacctccacaac
caccaccaccttaaacccagcagcaagtgcaaaggctcctgcccagcctcctatacccgc
ttcaccactatccggcggcatgaaaggcagcaggaggccatggcccagcaggataaactg
tccacccaggagaaaataaagaactcctcctctctcccctcaaaccacttcctcatgggc
cctgcaccgttcagggtgagaaggtctctccagtctcaccaggccaaaaagactctctca
gccactaaggtgatggcaggtcaaacgtcacagacccatttctatgatcccaggcccctc
atcccacagcgcctctcttccttggaggtactggagaggctgggcaacggggaaggtgcg
ccatccgacagtgacaacaacctgactaataggggagtcttggacgccaatgggaatctt
ctgcagccgctggcagcgcaccgaagagattcagactacttgacccatgtagaccttggt
gacggtcaggatgatgtggtcaggagacgccatggagataaagagaaaatcttggaagag
cagcgacggctgaagagggaacaggaggaggctgacacagcatcgaggcgacacacggga
atcgttcccacccaccaccagttcatcaccaacgaacgtttcggagacctgctcaacatc
aacgaagcagacaagaggaaatccggatcagagagaactccagccctggctcggtttgac
ttcagagcggagactctaaaggagttaccatttcaaaagggagacattgtgtacatcatt
cgacaggtggataataattggtttgaaggggagcatcacggcagagtcggcatcttccca
cggagttatgttgagctccttccccccacggagaaggcccagccaaagaagagtgcccca
gtgcaggtgctggagtatggagaggccattgcacgcttcaactttacaggggacacagtg
gtggagatgtctttcagaaagggagagaggatcatcctgattcgcagggtcgatgagaac
tggtacgagggcaaagtctctggcaccaatcgccagggtatcttcccagtcacctacata
gaggtgcacaaacgacccagagtcaagaatggattggattacccagacccccccattggc
caatcacctcaccgcagcctcaatgcttcccctcagctgaaccgtgtccgtaacaaccgg
ctcaccacgtcccccctgcccctcccccgatccccccgccgctctgtgtctcccgaggtc
catgccatctcctctgagtggatctccctgaccatagggggttccagccctcccactgcc
cccacccctccactacccccgctcccctctgtgtcttaccgctggggcgagtacctgccc
ccctccaagtctgccagccccgtgccccccatctgcggcagcccgtactgcatctccccc
atggcctccccctccgcctcccccctgcctccgccctacccgccccgccctggctcggcc
accccttacctcaccttcaccccgccccagggggaggacttcctgctctcccctccctct
cctcgtctgtcccgcagcctgagcccctgtggaggggtgggcctggagagctggctgaca
ggggccagccccttgagcatcctggagagggagttgacggagggggagggggcagaggga
gacaggggcactggccgcaaagccctgggcagctggcgaaatagccctgcagagctggtg
aagaatgagagcgactaccatggaagaacatccagaagccctgtcatgttgtttgacatc
caggacaacaacatgaatgcgaactcattcgcggaggcggtgtgtaatgagatcatgaat
atagctgagacctcggtgaggtactgcagcaccctctccccccaccccaatgactctgtc
cttcacagactacttcccccccttcaccccagtaaacaatctctcatcatttcccagcaa
ccccagtcccacagcaacagcccggagccaagccgtctcagctgtggaattttccaggct
ttgtacagttacgtgccacagaatgaagatgagctggagctgcaggagggagatcttgtc
agtgtcatggagaagtgcgatgatggctggtttgttggtacctcgaagaggacaaaacac
tttggcacgtttccaggaaattacgtaaaagaggtcaacttataa
DBGET
integrated database retrieval system
