Coregonus clupeaformis (lake whitefish): 121568963
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Entry
121568963 CDS
T08357
Name
(RefSeq) leucine-rich repeat-containing protein 4B-like
KO
K16360
netrin-G3 ligand
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04514
Cell adhesion molecule (CAM) interaction
cclu04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
121568963
04517 IgSF CAM signaling
121568963
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121568963
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
NGL family
121568963
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_9
LRR_14
ig
LRR_1
V-set
Ig_2
LRR_NXF1-5
VEGFR1-3_N_Ig-like
LRR_EndoS
LRRNT
Motif
Other DBs
NCBI-GeneID:
121568963
NCBI-ProteinID:
XP_041735399
LinkDB
All DBs
Position
7
Genome browser
AA seq
733 aa
AA seq
DB search
MRITTVTCLPCPSPLLLLLVQLLLRLLLPGPEFVGAASPCPTHCSCSNQASRVICTRQSL
DGVPESISVNTRYLNLQENSIELIKSDTFKHLRHLEILQLSKNKISQIEVGAFNGLPNLN
TLELFDNRLTLVPSQAFEYLSKLRELWLRNNPIETLPGYAFHRVPSLRRLDLGELKKLDY
ISDAAFVGLVNLRYLNLGMCGLKDIPNLTALVRLEELELSGNRLEIIRPGSFQGLVSLRK
LWLMHSQVKVIERNAFDDLKNLEELNLSHNSLHSLPHDLFTPLHQLERVHLNHNPWVCNC
DVLWLSWWLKETVPSNTTCCARCHAPPGLKGRYIGELDQSHFTCYAPVIVEPPTDLNVTE
GMAAELKCRTGTTMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTLRDTGQYTCM
VTNSAGNTTATAVLNVTAADVGVSYFTTVTVETVEPNEGPTVYAGVMNSHNESYVITPSG
HQWRGGVPTTASSLSAWSLSSSRATRPTFTVPITAETGYSGLDDVMKTTKIIIGCFVAIT
FMAAVMLVVFYKLRKQHQLHKHHGPTRAIEIINVEDEIGAGAGGRGSGISGGGTVSRDGG
GGGGVGGGQSLRMHHPEMVNLPNLARQEHLNHYYKAHHFNNNMMGLGMGLNNNNNPSLSP
CSQTQSTPNSCAQGPTSTSGGTPTGGSLPSPVPLPQLGIHSSLKGLLGKGQNPQIEPLLF
KSGSKENVQETQI
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcaccacggtgacctgccttccctgcccctcccccctcctcctcctattggtc
cagctgctactgcggctcctcctccctgggccagaatttgtaggggccgcctccccctgc
cccacccattgcagctgctccaatcaggccagtcgagtcatctgtacaagacagagtctg
gatggggtgcctgagagcatatcagtcaacacacgatacctcaacctgcaagagaattca
atagagcttatcaagtcagacaccttcaagcacttgaggcaccttgagatcctgcagctg
tctaagaacaaaatcagtcagattgaggtgggagcattcaatggcctgcccaacctcaac
acgctggagctgttcgacaaccgcctcactctggtcccctcacaggccttcgagtacctc
agcaagctgcgggagctgtggctacggaacaaccccatcgagacgctgccgggctacgcc
ttccaccgcgtgccctcgctgcggcgcctggacctgggagagctcaagaagctggactac
atctcagacgccgccttcgtgggcctggtcaacctgcgctacctgaacctgggcatgtgt
ggtctgaaggacatccccaacctgacggccctggtgcgtctggaggagctggagctgtct
gggaaccgtctggagatcatccggcctggctctttccagggcctggtgtcactccgtaaa
ctgtggctcatgcactcgcaagtgaaggtcatcgagcgcaacgccttcgacgacctgaag
aacctagaggagctcaacctttcccacaactccctgcactcgctgccccatgacctcttc
accccgctgcaccagctggagcgggtgcacctcaaccacaacccctgggtgtgcaactgt
gacgtgctgtggctcagctggtggctaaaggagacggtgcccagtaacaccacgtgctgc
gcccgctgccacgctcccccaggcctgaagggcaggtacattggggagctggaccagagc
cacttcacctgctacgctcctgtcatcgtggagccacccaccgacctcaacgttaccgag
ggcatggctgcagagctgaagtgtcgcacgggcaccaccatgacctcggtcaactggctc
acgcccaacggcaccctgatgacccatggctcctaccgggtccggatctccgtcctgcac
gacggtacgctcaactttaccaacgtcacgctgagggacacgggtcagtacacctgcatg
gtgaccaactcggctggcaacaccacggcaaccgccgtgctcaacgtcactgctgccgac
gttggcgtcagctacttcactactgtcaccgtggagacggtggagcccaacgagggcccg
acagtctacgcgggtgtcatgaatagccacaatgagtcatacgtcattaccccatctggc
caccagtggagggggggggtccctaccaccgcctcctctttgtcagcctggtccttgtcc
tcgtcccgggccacccggcccacctttactgtgcccatcactgctgagacgggctactct
ggccttgacgacgtgatgaagaccaccaagatcatcattggctgcttcgtggccatcacc
ttcatggcagccgtgatgctggtggtcttctacaagctgaggaagcagcaccagctgcac
aagcaccacggccccacccgcgccatcgaaatcatcaacgtggaggacgagattggcgcc
ggtgccggcggacgcgggagcggcatctcggggggaggcaccgtctctcgggatggaggc
ggagggggaggagtaggaggagggcagagcctgaggatgcaccacccggagatggtcaac
ctgcccaacctggccagacaggagcacctcaaccactactacaaggcacaccacttcaac
aacaacatgatgggcctgggcatgggcctcaacaacaacaacaatccctccctctccccc
tgctcccagacccagagcacccccaactcctgcgcacagggacccacctccaccagcggt
ggcacccccacgggtggctcgctgccctcccctgtgcccctgccccagctgggcatccac
agctctctgaaggggctcttggggaaaggccagaaccctcagatcgagcctctgctcttc
aagagtggctccaaggagaatgtgcaagagactcagatctga
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