Coregonus clupeaformis (lake whitefish): 121568999
Help
Entry
121568999 CDS
T08357
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2B-like isoform X1
KO
K05210
glutamate receptor ionotropic, NMDA 2B
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04020
Calcium signaling pathway
cclu04080
Neuroactive ligand-receptor interaction
cclu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
121568999
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121568999
04082 Neuroactive ligand signaling
121568999
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121568999
Ion channels [BR:
cclu04040
]
Ligand-gated channels
Glutamate (ionotropic)
121568999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NMDAR2_C
Lig_chan
Lig_chan-Glu_bd
ANF_receptor
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
121568999
NCBI-ProteinID:
XP_045077083
LinkDB
All DBs
Position
7:complement(10187647..10241599)
Genome browser
AA seq
1704 aa
AA seq
DB search
MPVCGCLSPSHPQERRASPTPLPPQEVRRPPRRRAALSSLSLSLLGLLLCMFHLPPACHS
RRDKGGGVAHYIPMAQPPHHQVLPKLVQGLSIAVVLVGNSSEVALAGAREKDDFLHMPLA
PNVEVLTMNETDPKSIIKSICDLMTEHWLQGVVFGDDTDQEAIAQILDFISAQTHIPILG
VRGGSSMIMAAKDDNSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYYPGYLDFVTK
IRSTIENSFVGWELEEVLLLDMSVDDGDSKIQNQLKKLQSPVILLYCTKEEANTIFEVAH
SVGITGYGYTWIVPSLVAGDAEVIPAEFPTGLISVSYDEWDYGLEARVRDGVAVIAMATS
TMMLDRGAHTLMKSECHGATDKKGPIAGNPNEVLRYLMNVTFEGRNLSFSEDGYQMHPKL
VIILLDKMRQWDKVGKWENGSLSIKYHVWPRFEIYSGAESREDDHLSIVTLEEAPFVIVE
DVDPLSGTCMRNTVPCRRQLQTMLAGNKTVDSGIYIKRCCKGFCIDILKKIAKHVKFTYD
LYLVTNGKHGKKINGTWNGMVGEVETKKAHMAVGSLTINKERSEVIDFSVPFIETGISVM
VSRSNGTVSPSAFLEPFSADVWVMMFVMLLLVSAIAVFVFEYLSPVGYNRCLADGREPGG
PSFTIGKAIWLLWGLVFNNSVPVQNPKGWTSKIMVSVWAFFAVIFLASYTANLAAFMIQE
EYVDQVSGLSDKKFQRPNDFSPPFRFGTVPNGSTERNIKNNYKEMHGYMIKFHQKNVDEA
LYGLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFASTGYGIAIQKESGWKRHVD
LAILQLFGDGDMEELEAMWLTGICHHEKNEVMSSQLDVDNMAGVFYMLGAAMALSLITFI
AEHAFYWQLRFCFMGYCTGKPGFVFSISRGIYSCIHGVQIEEKSGSALDSPSVTMNNTQS
NILRLLRTAKNMASLSGVNGSPHSALDFIRRESSVYDISEHRRSLAGHSDCKPPYMPEDN
MFSDYINEVERTFGNLHLKDSNLYQDHYLHHHGGSALGLSGPPLNRPHSLGSNSSLEGGM
FDCDSLGGGVAPIFTTQPRSALTHRNMSKFDLIASQNPPSGPGFKSGLSDLYGKLSFKGG
ASSSGYIPGHDRYCGGGGREDDGNIHSDVSDISTHTVTYGNLEGNAKKRKQYRDSLKKRP
ASAKSRRELDEIELGYRRKPYHTGYHHYHGHRSSSPPLLPSERKRGGGGNAGSTSYLFRD
KESVRDFYLDQFRPKVGVPQWEHVDLTDGPGGGGGGGGGNCTSLVSVDDFLKQSKPKKSE
SKSGGGTSGVGLAGGDWECRNCRASGGGGKQMSMHGSGAGERGGGYGGGVSCGSSGGGGN
SRPSSATCMRCEGCKKTGNLYDISEDNNHLLEQMGGGKGGGMGAVGLGGGAQPQTQAQRR
KSAGFGKPLRRQHSYDTFVDLQKEEAVGVSGIMGDLGGGDGGMGGAGMGGMLHPPRSVSL
KEKERYMEGVSPFAHIFERHGGSERERERDRDPLFYGGERAKEAGSPFGLFRGGEGLHRR
SVGERDMRDRERAMMEGGGGGTYSLSKSLYPDRVNQNPFIPTFGDDQCLLHGAKQYYIKK
QQQQQQMPPKNSRSDFRGSVGVTSFLPATATAGVMSNVDPRFPMELCLGGNLHGSTLGVG
PTQRAFNGSNGHVYEKLSSIESDV
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtctgcggctgcctcagcccctcccaccctcaggaaaggcgagcgtcccccaca
cccctgcccccccaggaggtgagacgtcctccccggcgccgtgcggccctctcctccctg
tccctgtccctcctgggcctcctgctgtgcatgttccacctgccccccgcctgtcactct
cgcagagacaagggtgggggcgtggcccactacatccccatggcccagcccccccaccac
caggtgctgcccaagctggtgcagggcctcagcatcgctgtggtgctggtgggcaactct
agcgaggtggcgttggcgggcgccagggagaaggacgacttcctgcacatgccgctggcg
cccaacgtggaggtgctcaccatgaatgagacggaccctaagagcatcatcaagagcatc
tgtgacctgatgacagagcactggctgcagggcgtggtgttcggggacgatacagatcag
gaggccatagcccagatcctggacttcatctccgcacagacacacatccccatcctgggg
gtccgcggcggctcctccatgatcatggctgccaaggatgacaactcaatgttcttccag
ttcggcccgtccatcgagcagcaggcctcggtcatgctcaacatcatggaggagtacgac
tggtacatcttctccatcgtcaccacatactaccctggatacctggactttgtcaccaag
atacggagcaccatagagaacagctttgtgggctgggagctggaggaggttctgctgctc
gacatgtcagtggacgatggagactctaagatccagaaccagctgaagaagctgcagagc
cccgtcatcctgctgtactgcactaaggaggaggccaacaccatcttcgaagtggcccac
tccgtagggatcacgggctacggctacacctggatcgtcccctcgctggtggctggggac
gctgaagtgatccctgccgagttccctacaggtttaatctctgtgtcgtatgacgaatgg
gactacggcctggaggcccgcgtgcgcgatggggtggctgtcatcgccatggcaacctcc
accatgatgctggacaggggggcacacacactgatgaagtctgagtgccacggcgccacg
gacaagaaagggcccattgctgggaaccccaacgaagtgctcaggtacctgatgaatgta
acgtttgagggccggaacctgtccttcagtgaggacggctaccagatgcatcccaaacta
gtcatcatccttttggacaagatgaggcagtgggacaaggtggggaagtgggagaatggc
tccctgtccattaagtaccacgtgtggcctcgctttgagatctactcaggggcagagagc
cgggaggacgaccacctttccatcgtgacgctggaggaggctccgttcgtcatcgtggag
gacgttgaccccctcagtggcacctgtatgaggaacactgtaccctgcaggagacagctc
caaacaatgctagcggggaataaaaccgtagactcggggatctatatcaagcgctgctgt
aagggtttctgcatcgacatcctgaagaagatcgccaagcacgtcaagttcacctatgac
ctctacttggtgaccaacggaaaacacggcaagaagatcaacggcacctggaatggcatg
gtgggagaggtggagacaaagaaggcccacatggcggtgggctccctcaccatcaacaag
gagaggtcagaggtcattgacttctcggtgcccttcatcgagacgggcatcagcgtcatg
gtgtcccgtagcaacggcaccgtctcaccctctgccttcctagagcctttcagtgctgat
gtgtgggtgatgatgttcgtgatgctgctgctggtgtcggcgattgctgtgtttgtgttt
gagtacctcagccctgtgggctacaaccgctgtctggccgacggcagagagcctggaggg
ccctccttcaccatcggcaaggccatctggctgctgtggggtctggtcttcaacaactct
gtcccagtgcagaaccccaagggttggaccagtaagatcatggtgtccgtgtgggccttc
ttcgctgtcatcttcctggcctcctacactgccaacctggcagccttcatgatccaggag
gagtatgtggaccaggtgtctggactcagcgacaagaagttccaaagacccaatgacttc
tctcctccgttccggtttgggacggtccctaacggcagcacggaaaggaacatcaagaac
aactacaaggagatgcatggctacatgatcaagttccaccagaagaacgtggacgaggcc
ctctatggtctgaagactggtaaactggatgccttcatctacgacgcagcagtgctgaac
tacatggccgggagggacgagggctgtaagctggtgaccatcggcagtgggaaggtgttt
gcctccacgggctatggcatcgccatccagaaggagtctggctggaagagacacgtggac
ctggccatccttcagctctttggagacggtgacatggaggagctagaggccatgtggcta
acgggcatctgccaccatgagaagaacgaggtgatgagcagccagctggatgtggacaac
atggccggcgtcttctacatgctgggggcggccatggctctgtcgctcatcaccttcatc
gccgagcatgccttctactggcaactgcgcttctgcttcatgggctactgcacgggcaag
ccaggcttcgtcttctccatcagcaggggcatctacagctgcatccacggggttcagatc
gaggagaagagcggctcagctctcgactctccatcggtcaccatgaacaacacccaatcc
aacatcctgcgtctgctccgaaccgctaagaacatggcctccctgtccggggtcaacggc
tcgcctcacagcgccctggactttatccgtcgtgagtcgtccgtctacgacatctccgag
caccgccgcagcctggcaggtcactcggactgcaagcctccgtacatgccggaggataac
atgttcagcgactacatcaacgaggtggagaggactttcgggaacctccacctgaaggac
agcaacctgtaccaggaccactacctgcaccaccatggaggatctgccctggggctcagc
ggcccgccccttaacagaccccacagcctgggaagcaacagctctctggaagggggcatg
tttgactgtgacagtctagggggaggagtggcacccatcttcaccacccagccacgctct
gccctgacccacaggaacatgagtaagtttgacctgattgccagtcagaacccgccctcc
gggccaggcttcaaatcaggactgtcagacctgtatggaaagttatccttcaagggaggg
gcctccagctcaggttacatccccgggcacgacaggtactgtgggggagggggcagagaa
gatgacggaaacatccattcagacgtttcagacatctccactcacactgtcacctacggg
aatctggagggcaatgctaagaagcgtaagcagtatcgcgacagcctgaaaaagaggccc
gcctcggccaagtcgagacgagagctggatgagattgagctgggctaccggagaaagcct
taccacacaggctaccaccactaccacggccatcgctcctcctccccgcccctactgccc
tccgaacgcaagagaggaggagggggaaacgcagggagcacatcctacctgttccgtgac
aaagagagtgtgagggatttctatttggaccagttccgccccaaagttggtgtcccccaa
tgggaacatgtggatctgacagacggtcctggaggggggggtggagggggcggggggaac
tgcaccagtttggtgtcagtagatgacttcctgaaacaaagtaaacccaagaaatcagag
tctaagagtgggggaggcacatctggggtggggttggcaggcggtgactgggagtgtcgg
aactgccgtgccagcggaggagggggcaagcagatgtcgatgcatggcagcggggcgggg
gagaggggaggcgggtatggtggaggggttagttgtggatcctcggggggtggagggaac
agccgtcccagctctgccacctgcatgcgctgcgagggctgcaaaaagacaggcaacctg
tacgacatcagcgaggacaacaaccacctcttggaacagatggggggtgggaaaggcggg
ggcatgggggctgtggggttaggtggaggcgcccagcctcaaactcaagcccagcgtagg
aagtctgccggctttggcaagcccctccgacggcaacactcgtacgacacctttgtagac
cttcagaaagaggaggcagtcggagtcagtgggatcatgggggatctaggagggggcgat
gggggcatgggtggtgcaggaatgggcgggatgttgcatcctcccagaagtgttagttta
aaagagaaggagcgctacatggagggtgttagccccttcgcccacatatttgagaggcat
ggaggctcagagagggagagggagcgagacagagaccccctgttctacggtggtgagagg
gccaaagaagcagggtcaccatttggcttgttccgaggtggcgagggccttcaccgtcgc
tcagtgggggagagggacatgagggacagagaaagagccatgatggagggcggtggagga
ggaacctactccttatccaaatctctctacccggatagggtcaaccaaaacccctttatc
ccaaccttcggtgacgaccagtgtctcttgcacggcgccaaacaatactacatcaaaaag
caacagcagcagcagcagatgccccccaaaaacagccgaagtgacttccggggctccgtg
ggcgtgacgtccttcttgccagcgactgccactgctggggtcatgtccaatgtggacccc
aggttccctatggagctgtgtctgggagggaacctccacggctccacgctgggtgtgggg
ccaacacagcgcgcgttcaatggcagcaacgggcacgtgtacgagaaactctccagcata
gagtcagacgtgtga
DBGET
integrated database retrieval system
