Coregonus clupeaformis (lake whitefish): 121569060
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Entry
121569060 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: neurogenic locus notch homolog protein 2-like
KO
K20995
Notch 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04330
Notch signaling pathway
cclu04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
121569060
04371 Apelin signaling pathway
121569060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_TEN
EGF_CA
Ank_2
EGF_2
Ank
Notch
NODP
EGF_3
NOD
Ank_3
Ank_4
Ank_5
EGF_DL_JAG
EGF_Teneurin
Plasmod_Pvs28
cEGF
PepSY_TM
DUF7472
Motif
Other DBs
NCBI-GeneID:
121569060
NCBI-ProteinID:
XP_041735614
LinkDB
All DBs
Position
Unknown
AA seq
2446 aa
AA seq
DB search
MGGNYKVWIFLPILFLVHNSEGLRCMDKYRPCDNGGTCIDSPSRCICRPGYIGPLCQSLD
PCHRSPCLNGAACKSQVANGIPQFTCVCQRGFRGQDCSLIDACATSPCANGARCANWNNH
YNCSCPPGFQGKNCRNDIDECRKPGVCLNAGLCMNTHGSFRCQCPPGYSGRTCEVSSLPC
APSQCINGGTCRPTGDHTYDCACLPGFEGHNCETNVDDCPGHKCMNGGLCVDGVNTYNCQ
CPPEWTGQYCAEDVNECLMQPNACHNGGTCFNTIGGHTCVCVNGWTGDDCSENIDDCATA
VCFNGATCHDRVASFFCECPVGKTGLLCHLDDACVSNPCNEGAVCDTNPLNGRAICTCPA
GFVGGACNQDMDECSIGANPCEHFGKCVNTEGSFQCQCGRGYAGPRCEIDINECLSMPCQ
NDATCLDRIGEFTCICMPGYMGTYCEVDVDECESNPCVNDGICRDMVNGFTCTCQPGFTG
TMCQIDIDECASTPCQNGAKCYDRPNGYECRCAEGYEGTLCESNTNNCQPDPCHHGTCVD
GIASYTCNCEAGYTGYRCENQLNECHSNPCQNGGKCVDLVNKYICQCQHGTSGTNCEINF
DDCASKPCDYGICKDGINRYDCVCKPGFTGPLCNVEMDECSSGPCRNGGTCVDKENGFHC
QCPEGFQPPYCYSQVDECGSNPCVHGACRDDINGYRCDCEPGWVGKNCDLDRNDCLPSPC
QNAGTCIDQLNGFTCKCRQGFRGNLCQVNINECSSSPCLNQGTCVDGVASFTCLCELPYS
GPTCADVLTPCSPNPCANHALCTHTPDYLGYQCNCQQGWQGQLCNIDVNECIANPCKNRG
TCTNTQGGFVCSCRGGFTGPSCETDINDCAPNPCLSGGSCTDGVNSFRCSCLPGFTGPRC
AVEVNECQSAPCKNGGTCTDYVNSYTCTCRPGFTGINCETNIPDCTESSCFNGGTCTDKI
NGYSCTCRSGFTGSHCQYEVNECDSQPCLNGGVCQDALESFRCSCPKGYTGNRCQMPVDW
CRRSSPCQNGGRCHQKDASFSCECLGGWSGRYCDIPGVSCEVAALKRGLQTDELCHHGGH
CVNTGNTHYCKCPTDYTDSYCESQVDHCEDKPCRNGATCRAYVGGYQCDCMPGYTGENCE
MEVNECQSHPCQNGGTCIDLVGHYICSCPPGTLGVLCEINEDDCAPPLRLRGTSPKCLNN
GTCVDRVGGYRCNCPPGFTGERCEGDINECHSNPCSPTNSLDCIQLPNDYQCVCKPGFTG
KEGVRVNNCERSMSCRELSCYNGGSCALTTRGARCTCLTGYAGPQCQHRSNEGCSSQPCR
NGGLCTEETSFPFFHCQCVQGWTGKRCEQGSTRLAEPPPPPTCPLPDCHGKANDGVCDKE
CNTFLCRWDGADCSLAVNPWARCTDPRCWRVFNNSQCDEACNNADCLYDNFDCKNKEKIC
NPIYKTYCIDHYADGRCDQGCNSEECGWDGLDCAGKVPEDLADGVLVLVVLLPPEELVRT
GTAFLQKLSAILRTTLRFRLDQNGEAMIRPYIRREARLKRELQPHQEVIGSIVYLEIDNR
LCSQSSDDCFPSANSAADYLGALSAVEMLSFPYPLKEVRSEKFPDIIDMPEWGKLMLVGV
AALFLLVILVVGVLIARRKREHSTLWFPEGFFPKKEPSSNKNRREPLGQDALGMKHMPKT
VEESLLGDHSDSWIDTDCPEAKRLKVEEPSILSDSEDTVDCRQWTQHHLAAADIRMPPSM
ALTPPQGEFDQDCMDVNVRGPDGFTPLMLASFCGGGLEPELPEEEESEECSANIISDLIY
QGATLAAQTDRTGETALHLAARYARADAAKRLLDAGADANAQDNTGRTPLHAAVAADAQG
VFQILIRTRATDLDSRMYDGSTALILAARLAVEGMVEELITCHADINAVDELGKSALHWA
AAVNNMEATMALLKNGANKDMQDLKEETPLFLAAREGSCEAVKILLAHFANREITDHMDR
LPRDIAQERMHHDIVQLLDEYNTVRSPQGHGGAPHHLAGGHTLSPLMCPPSAFMPGLKNT
PQGKKSRRPGAKGSGLGGQHAQNLKDSAKARNKKLTLDMQSALLESSVTLSPVDSLDSPR
GGANNAGYITNPCSPVAMPSSGLFHSSMSVPSTPMVHSSMMDGSGPFAVSLAQLNDLGDG
GMSMQGRVSMASQVNQGPHGYVLNAGQLGLNMGLVSPVSVPFDWHSRMPPSSQCGGQVVN
LVHSSQAGMHPQSPMQQQQNSLMMQQHQQHQQHLYRSAQQAMLQPTPVISSTPISLSPVK
LPSIAEQQQQLHNHSMASQQSLRMGTSSPPTPQTTQPPPAFFQQQPPGQQQPPQPQPAPQ
PTSPQASQAPPPQASGSTAGLEDYPTPPSQHSYSSALDATPKHYLRLPSEHPYLTPSPES
PEPWSSPLPPLCLIGQTPPPAPAVAGPAQTQIPHVQESNGKMQVFA
NT seq
7341 nt
NT seq
+upstream
nt +downstream
nt
atgggggggaattataaagtttggatatttttaccaattttattcttggtccataatagc
gaaggactccgctgcatggataaatacagaccttgtgacaatggaggaacgtgcatagac
tcaccctcgcgatgcatatgtcggccggggtacatcgggcctctgtgccaaagcctggac
ccctgtcaccggtcgccatgcctcaacggagccgcctgcaagagccaggtggccaacgga
atcccacaattcacctgtgtgtgccagagagggttcagaggtcaagactgctccctcata
gacgcctgtgccaccagcccctgtgccaatggtgcccgctgtgccaattggaataaccac
tacaactgttcctgcccgcctgggttccaggggaagaactgccgcaacgacatcgatgag
tgccgcaagcctggcgtctgtctcaacgcaggcctctgcatgaacacccatggttccttc
cgctgccagtgcccacctgggtacagcgggcgcacctgcgaggtgtcctccctgccctgc
gccccctcccagtgcatcaacgggggcacctgccgcccgaccggagatcacacctacgac
tgtgcctgcctgccagggttcgagggacacaactgtgagacgaacgtggacgactgccca
gggcataagtgtatgaatggaggcctgtgtgtggatggagtcaacacctataattgccag
tgcccacctgagtggacaggtcagtactgtgcagaggatgtcaatgagtgccttatgcag
cccaacgcctgccacaacggaggcacctgcttcaacactatcgggggacacacctgcgtg
tgcgtcaacggctggacgggagacgactgcagcgagaacatcgacgactgtgccaccgcc
gtgtgcttcaacggagccacctgccacgaccgcgtggcatccttcttctgcgaatgccct
gtggggaaaaccggtctgctgtgtcacctggacgacgcgtgcgtcagcaacccgtgtaac
gagggcgccgtgtgtgacaccaaccccctgaacgggcgtgccatctgcacctgtcccgcc
ggctttgtgggcggagcctgcaaccaggacatggacgagtgttccattggtgccaacccc
tgtgaacactttgggaagtgtgtaaacacggaggggtccttccagtgccagtgtggccga
ggctacgccggcccccgctgtgagatcgacatcaacgagtgtctgtccatgccctgccag
aacgatgccacctgtctggaccgcatcggagagttcacctgcatctgcatgccaggctac
atggggacctactgtgaggtggatgtggatgagtgtgagagcaacccttgtgtgaacgac
ggtatctgccgggacatggtcaatggattcacatgcacctgccagccagggtttactggc
accatgtgtcagatcgacattgatgagtgcgccagcacgccctgccagaacggagccaag
tgttacgaccggcccaacggatacgagtgccgctgtgctgaagggtacgagggcacactg
tgcgagagcaacaccaacaactgccagcccgacccgtgccaccacggcacctgcgtggac
ggcatcgccagctacacgtgtaactgcgaggcgggctacacgggctaccgctgcgagaac
cagctgaacgagtgccatagtaacccctgccagaacgggggcaagtgtgtagacctggtc
aacaagtacatctgccagtgtcagcacggcacctcaggtaccaactgtgagattaacttt
gatgactgcgccagcaaaccatgtgactatggaatctgcaaggacggcatcaaccgctac
gactgcgtgtgcaaaccaggcttcaccggccctctgtgcaacgtggagatggacgagtgc
tcgtccggcccctgcaggaacggggggacgtgtgtggacaaggagaacggcttccactgc
cagtgtcccgagggcttccagcctccctactgctactcccaggtggacgagtgtggcagc
aacccctgtgtgcacggcgcctgcagagacgacatcaacggctaccgctgtgactgtgag
cccggctgggtggggaagaactgtgacctagaccgtaatgactgtctgcccagcccctgt
cagaacgctggcacctgcatcgaccagctgaacggattcacctgcaagtgtcgccagggc
ttcagaggtaacctgtgccaggtaaacatcaacgagtgttcgtccagtccgtgtctgaac
cagggcacgtgtgtggacggcgtggccagtttcacctgtctgtgtgagctgccctacagc
gggcccacctgtgccgacgtgctcaccccctgctcccccaacccctgtgccaaccatgcc
ttgtgcacccacacacctgactacctgggctaccagtgcaactgccagcaaggatggcaa
ggtcagctgtgcaacattgacgtgaacgagtgcatcgccaacccgtgtaagaaccgtggt
acctgcaccaacacacagggagggtttgtgtgctcctgccgcggcggcttcaccgggccc
agctgtgagacggacatcaacgactgtgcccctaacccgtgtctgagtgggggttcctgt
acggacggtgtgaactcgttccgctgcagctgtctgccaggcttcacggggccgcgctgt
gccgtggaggtgaacgagtgtcagagcgccccctgtaagaacggaggcacctgcacagac
tacgtcaacagctacacctgcacctgcagacctggcttcactggcattaactgtgagaca
aacatccctgactgcactgaaagctcatgcttcaacggcggtacctgtacagacaagatc
aacggctactcctgtacctgccgctcaggcttcacaggctcccactgccagtatgaggtg
aatgagtgtgactcccagccatgcctcaacggaggggtctgccaggacgctctggagtcc
ttccgctgctcctgccccaagggatacacaggcaaccgctgccagatgccagtggactgg
tgcagacgatcgtctccctgtcagaacggagggcgctgtcatcagaaggacgcctccttc
tcctgtgagtgtctgggaggctggtctggacgctactgtgacatccctggggtttcctgt
gaggtggccgcgctcaagagaggcctccagacagacgagctgtgtcaccacggaggtcac
tgtgtcaacacaggcaacacccactactgtaagtgtccaacagactacacagacagctac
tgtgagagccaggtggaccactgtgaggacaaaccctgtcgcaacggcgccacctgcagg
gcctacgtgggaggataccagtgtgactgtatgccaggctacaccggagagaactgtgag
atggaggtcaacgagtgccagtctcacccgtgccagaacggtggcacctgcattgacctg
gtgggacactacatctgctcctgcccacctggcaccttgggtgttctatgtgagatcaac
gaggatgactgtgctcctcctctgaggctgcgcgggacttctcctaagtgtctgaacaac
ggtacctgtgtggacagggtggggggctaccgctgtaactgtcctcctggcttcactgga
gagaggtgtgagggggacatcaacgagtgtcactccaacccctgcagccccaccaacagt
ctggactgcatccagctccccaacgactaccagtgtgtctgcaagcccggcttcacaggt
aaggagggtgtgcgtgtgaacaactgtgagaggagcatgtcgtgccgggagttgtcttgc
tataatggaggtagctgtgctctgaccacgcggggcgcccgctgtacctgcctgactggc
tacgccgggccccagtgccagcaccgtagtaacgagggctgctcctcccagccgtgccgc
aacggaggcctctgcaccgaggagaccagcttccccttcttccactgccagtgtgtccaa
ggctggacgggcaagcgctgcgagcagggcagcactaggctggcagagccccctccgccg
cccacctgccccctgcccgactgccacggcaaggccaacgacggtgtctgcgacaaggag
tgcaacacattcctctgccgctgggacggggccgactgctcgctggcggtgaacccgtgg
gcgcgctgcaccgacccgcgctgctggcgtgtcttcaacaacagccagtgtgacgaggcg
tgcaacaacgctgactgcctctacgacaactttgattgcaagaacaaggagaaaatctgc
aatcccatctacaagacgtactgtatcgaccactacgctgacggtcgctgtgaccagggc
tgtaactcagaggagtgtggctgggacggtctggactgtgcagggaaggttccagaggac
ctggctgacggggtgctggtcctggtggtcctgctacccccggaggagctagtacgtacg
ggcaccgccttcctgcagaagctcagcgccatcctgagaaccaccctgcgcttccgcctg
gaccaaaacggagaggccatgatccggccctacatccggcgagaggcgcgcctcaaacga
gagctgcagccccaccaggaggtcattgggtccatagtgtacctggagatagacaaccgt
ctgtgttcccagagctctgatgactgtttcccgtcggcaaacagtgcagcagactacctg
ggagccctgtcagccgtggagatgctcagcttcccataccccctcaaagaagtccgcagt
gagaagttcccagacattatagacatgccagagtggggcaagctgatgctggtgggcgtg
gcagccctgttcctattggtcatcctggtggtgggcgtgctgatcgcccgcaggaagaga
gaacacagcaccctgtggttccccgagggcttcttccccaagaaggaacccagcagcaac
aagaaccgcagggaacccttaggccaggacgcactgggcatgaaacacatgcccaagacg
gtggaggagtctctgcttggcgaccacagtgactcgtggattgacacagactgccctgag
gccaagagactgaaggttgaggagcccagcatcctgtcagacagtgaagacactgtagac
tgtagacagtggacccagcaccacctagcggctgcagacatccgcatgcccccctccatg
gccctcaccccgccccagggagagttcgaccaggactgcatggacgtcaacgtccgagga
cctgacggtttcacccctctgatgctggcgtcgttctgcggaggcggtctggagcccgag
ctccccgaggaggaggagtcagaggagtgttctgccaacatcatctctgacctcatctac
cagggcgccacattggccgcccagacggaccgcaccggagagaccgcccttcatctggct
gcccgctacgcccgcgctgacgctgccaagcggctgttggacgccggggccgacgccaat
gcacaggacaacacaggccgcacgccgctacacgctgccgtggccgccgacgcccagggg
gtgttccagattctgatcaggacccgggccacagacctggactctcgtatgtacgacggc
tccaccgccctgatcctggctgcccgcctggctgtagagggcatggtggaggaactcatc
acctgccatgcagacatcaacgctgtcgacgaactgggtaaatctgctctgcactgggca
gctgctgtcaacaacatggaggccaccatggccctgctgaagaacggagccaacaaagac
atgcaggacctcaaggaggagacccctctcttcctggcggcgcgtgagggtagttgtgag
gcagtcaagatcctcctggcccacttcgccaacagggagataactgaccatatggaccgt
ctgcctcgggacatcgcccaggagcgaatgcaccatgacattgttcagctgctggatgag
tacaacacagtgaggagcccccagggccacggaggggccccacaccacctggccggggga
cacaccttgtcccccctcatgtgtccccccagcgccttcatgcccggcctgaagaacacc
ccccaggggaagaagagtcgccgccccggggccaagggttcaggtctgggagggcagcat
gcccagaacctcaaggattcagctaaggcccgcaacaagaagctgaccctggacatgcag
agcgccctgctggagagctctgtcaccctgtcccccgtcgactccctggactccccccgc
ggaggggccaacaatgccggctacatcaccaacccctgctccccggtggccatgccctcc
tctgggctcttccactcctccatgtcagtgcccagcactcccatggtgcacagcagcatg
atggacggctctggccccttcgctgtgtctctggcccagctcaacgacctgggagatgga
ggcatgtccatgcagggccgcgtgtccatggccagccaggtcaaccagggcccccacggc
tacgtgctcaacgccggccagctggggctcaacatgggcctggtgagccctgtcagcgtg
cccttcgactggcacagccgcatgcccccctcctcccagtgcgggggacaggtggtgaac
ctggtccacagcagccaggcgggcatgcaccctcagagccccatgcagcagcagcagaac
agcctcatgatgcagcagcaccagcagcaccagcagcacctgtaccgcagcgcccagcag
gccatgctgcagcccacgcctgtcatctccagcacgcccatctccctcagccctgtcaag
ctgccctccatcgcagagcagcagcagcagctccacaaccactccatggccagccagcag
agcctccgcatgggcacctcctccccacccaccccccagacgacacagccccctccagcc
ttcttccagcagcagccccccgggcagcagcagcctcctcagccccagccagcccctcag
cccacctctccccaggcctcccaggcccctcctccccaggccagtggcagcactgcaggc
ttggaggactaccccaccccaccctcccagcacagctactcctccgccctggatgccacc
cccaagcattacctccgcctgcccagcgagcatccctacctgaccccctccccagagtcg
cccgagccctggtccagccccctccccccactgtgtctgattggtcagactccaccccca
gccccggcggtggccggtcctgcccaaacccagatcccccatgtccaggagtccaacggc
aagatgcaggtgtttgcatga
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integrated database retrieval system
