Coregonus clupeaformis (lake whitefish): 121569103
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Entry
121569103 CDS
T08357
Name
(RefSeq) probable E3 ubiquitin-protein ligase MGRN1 isoform X1
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04120
Ubiquitin mediated proteolysis
cclu04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121569103
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
121569103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121569103
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121569103
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121569103
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-RING_5
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
121569103
NCBI-ProteinID:
XP_041735674
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Position
7:27709752..27718386
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AA seq
551 aa
AA seq
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MGSILSRRIAGVEDIDIQANSAYRFPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDTDAPVEEGGKPKVLYGV
EFTFDADARVAITLYCQAFEEFANGMAMYNPKGPAMVSETVHYKRGVSQHFSLPSFKIDF
TDWKEEDLNFDMDRGVFPMVIQAVVDEGDDCLGHAHVLLAAFERHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENKNNQETKPSEDENSDNSNECVVCLSDLRDTIILPCRHLCLCNSC
ADTLRYQANNCPICRLPFRALLQIRAVRKKPGPLSPVSFSPVLAQNMDHDEHSSSDSVPP
GFEPISLLEALNGLHSVSPSIPPAPLYDDINFSGGLVGEGRPLGSPEHSGDGGLQKAKVS
KSPDSTLRSPSSPIQEEDEEKLSEMSDAQPHTLLSSSPAPTGATAAQDVPESISPDDEDR
LHSGGEREILHDCSSEHSSLTKTESDPPGDLSLPGSSESTESLKSQSTNCSSQPLLCPPS
SLHMEDEQLDS
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgattcttagccggagaatcgctggcgttgaggatattgatatccaggcgaat
tctgcatacagatttccaccgaaatcggggaattactttgccagccattttttcatggga
ggggagaaatttgacactccccatccagagggttacctatttggagaaaacatggatctg
aacttccttggaaataggcctgtacaatttccgtacgtgaccccggcaccccatgagcct
gtgaagaccctgagaagtctggtcaatatcagaaaggactccctgcgcttggtcaggtac
aaagatgacactgacgctccagtggaggaaggggggaagccaaaggttttgtatggtgtg
gagttcacatttgacgcagatgctcgtgtggctatcaccctgtattgccaagcttttgag
gaattcgccaatgggatggcaatgtacaacccaaagggaccagccatggtatctgagact
gtgcactataagaggggtgtgagccaacatttctccctgccttctttcaaaatcgatttc
accgactggaaggaggaggatctgaactttgacatggaccggggtgttttccccatggtg
atccaagctgtggtggatgaaggggatgattgcttgggacatgcacatgtgctactggca
gcctttgagagacatgtggatggcagtttctcggtcaagcctctgaagcagaagcaaatt
gtggatcgtgtgagctacctgctgcaggagatctatggaattgaaaacaaaaacaaccaa
gagaccaagccgtcggaggatgagaacagtgacaacagcaatgagtgtgttgtttgtctg
tcagacctcagagacaccatcatcctgccctgcagacacctgtgtctctgcaactcctgt
gctgacaccctgcgttaccaggccaacaactgtcctatctgcagactgcccttccgagcc
ttgctgcagatcagagctgtgaggaagaagcctgggccgctttcccctgtgtctttcagc
cctgtactggctcagaacatggaccatgatgagcactcgagctcagactcggttccccca
ggctttgagcccatctctctgctggaggcccttaacggcctgcactctgtgtccccctcc
atccctcccgcccccctctacgatgatatcaacttctctgggggcctggtaggggagggc
cggccgctgggctccccagaacactctggggacgggggcctgcagaaggccaaagtcagc
aagtcacctgacagcaccctgaggtcgccctcatcacccatccaggaggaggatgaggag
aagctgtctgagatgtcggatgcccagcctcacacactgctctccagcagccctgctccc
actggggccactgcagcccaggatgtaccggagtccatttccccagatgatgaggacagg
ctgcactctggaggagagcgagagatccttcatgactgcagcagtgaacacagcagcctg
accaaaacagagagtgacccgccaggggacctgtctctgccagggtcatcagagtcaacg
gagagcctgaagagtcagagtaccaactgctccagccagcccctcctgtgtccccccagc
agccttcacatggaggatgagcaacttgactcctaa
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