Coregonus clupeaformis (lake whitefish): 121569181
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Entry
121569181 CDS
T08357
Name
(RefSeq) laminin subunit alpha-1-like isoform X1
KO
K05637
laminin, alpha 1/2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121569181
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121569181
09142 Cell motility
04820 Cytoskeleton in muscle cells
121569181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
Laminin_EGF
Laminin_B
Laminin_N
Laminin_II
Laminin_I
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
121569181
NCBI-ProteinID:
XP_041735842
LinkDB
All DBs
Position
7:complement(40652249..40715986)
Genome browser
AA seq
3087 aa
AA seq
DB search
MRLFFCAIVLLWASSADCQQRGLFPAILNLASNAEITTNATCGEPEPEMYCKLVEHVPGR
RIRNSQCRTCNAQSQNPKEQHPITNAIDGTNGWWQSPSIKNGRQFHLVTITLDLRQIFQV
AYIIIKAANSPRPGNWVLERSMDGVEYTPWQYYAISDTECLTHYNITPRLGPPTYKRDDE
VICTSYYSRLVPLEHGEIHTSLINGRPSADQLTPELLDFTSARYIRLRLQRIRTLNADLM
TLSYRDPKEVDPIVTRRYYYSIKDISVGGMCICYGHAQSCPLDPVAKKLQCVCEHNTCGE
SCNECCPGYHQEPWQPGTLSNGYTCEKCNCHDKAEDCYYNQTMDDHKMSMNLHGHFHGGG
VCINCTQNTAGVNCETCADGFYRPSEVSPYDENPCVECGCDMRGSLTPACIRDDNHAKLE
KGLNPGQCLCKEGFAGERCERCAFGYKDFPLCSRCECSLEGSLNIDPCTECICKENVMGA
NCDLCKQGFYNLEDRNPEGCTECFCFGVSDVCESSPWSLSQTVHSNGWLLPTQSVSIYTA
PLTDDDNNLIVPSITMIQSYRFVSTWAAPEGFLGNRLTSYGGFLNYTVAYDVSVDNVDNS
LPSQFDLIIEGNGRTLRQTPPRQLFLTPLREQLVSVELLPQGFVDLHTGQRVDRDELMTV
LADVAGLRIRGHLNASAEGALRLSTVSLDMADISAANPVQARDVEQCECPWGYLGTSCEY
CSSGFYRVGGILFGGNCLQCECNDHATECDINGVCLDCTHNTTGPHCNQCLPGYYGDTSE
GTLEDCQRCACPLIVATNNFSPTCVLEGPGQVTCDQCQQGYTGTKCERCANGYHGDPTVA
GQECVVCECNGNVDSWEPGHCDTSSGVCLKCHSHTSGDYCERCEDGYYGDAITAKNCLAC
GCHGNGSYSAMCDLFTGQCTCKPNVVGDKCDQCQVGFHSLLSGQGCRDCNCSQSGSVSTA
CEEEGLCQCIPGVAGDKCDRCYHGYFNYQDSGCTQCECAHTHGNCNATTGECICPPHTIG
EKCELCEERHWGHDTVAGCKSCECSEAGSSATQCDLTNGQCLCRREFAGQKCDRCTMGYR
GYPECTACNCNINGTREELCDEELGLCSCEAPGNCVCKDNVGGGGCDECKKGTFGLSGPN
PAGCSPCFCFGVSSDCEELSGMVRVPITLGSEPELLRVVSQSDLQGSVEGVYYQTPDMLL
DTREIESPTLAGPYYWRLPKHYQGNKLLSYGGKLSYMVAFYALDGAGLANYEPQVLMRGG
HLGKKVIYIDMPAPDNRVKTRQDVPLTEHKWKYFNSVSEKAVSHSDFMAVLSNIEYITIK
ASYGTGLQQSRISNITMDTALEAEEGLEVMEVACLIETCECPAGYAGLSCQECAPGYYRQ
PVTDLNLRGKRPLIQPCVPCQCNNHSQACDLDTGECLGCQHNTAGEHCNMCGSGYYGNVK
GSISDCSLCACPLKENSFSPTCALEGVVGDFRCNACKPGYEGRYCERCSVGYYGNPSAPG
EKCEACQCSTAGSLHLVCDSLKGQCECKAGVRGHLCDQCEARHVLDGDQCVSCDDKCTGD
LLDDLDAVERSFLSVNLTGVILSPYNTLVSLENDTREVKNLMSWERSPAYHLNRAEEDLT
NLTQDIDGLLRKATGLSADGEEVAQSTENSVTQGAELLEYITTIHTAIQVLAEEAGRLNR
TENVEKDEANSTRLREQIAAILETIRAVNLSLANASVSTELSATEALLQRVLKDIQEPQG
AIESQTLNISTTLTEHHQQLEDAHALLMTAREKNNHTHTLLGSINTNLPEYQGLKQNVSR
LNQTAETQLEETQDILADAVNLAEEMGNITSQLEGAKDQLEQWNPMLRKHVDALVMELRK
KDALELVYKAEDHARELSKKAQGLQSSLVEVMNATLNATSAVHGNSNIRANVQPAEEMAN
LANLTATMALNMTVQPEESLTDLGSEAVQRSENVLAESLALRNSTEGLLANISDVTDRMA
LLKEKLCNTSRLIPEQGALLHSLPNVGTSEQVLEAKEQAALANASLQRALERLEELQVRL
EESSTAVAQAKTSISNTNQLVSDSHSTASTAESKLKEAESRTERLYDRLKPLKTLGENLS
RNLSEIREMINQARKQAASIKVAVLADKNCVRAYKPEVSSSNFNTLTMTVKTSEPDNLLF
YMGSSSSVDFMAVEMQHGKVAFLWDAGSGHAKLEYPDVKINNNKWHRINATRFGKHGTLS
VHQLESDPLPAVKTTSPGSATILEVNKSTLIFVGGLGSQIKSSVVKMSQFKGCMGEASLN
EKNIGLWNYAEREGQCRGCFMSPQTEETSFHFDGSGYSVVEKPLRSTSTSIVMLFKSLSP
NGLLLYLASNGTRDFLSIELVEGQVRLTFELGSGPLTLTSNKAYNTGSWYKITLQRNKRK
VYMAVMAADNSSEKEIMEAESPGTASDLNRSDLDPIYIGGLPMSRPIRRQVVARSYVGCI
KNMEIARSNFDLLRDSYGVKKGCVLEPIRSVSVLKEGYVELPAVSLDPQGELLASFSTRN
DTGIILAGFSKAGTRKSRQARQPFLAVMLMSGRLEVHINMAEGGSVHKVVVKSRSGSFSD
GQEHSVILQRNRKMLVVLVDEDHQEMVRLYSEKASLTLTSLYMGGVPPGEGAGLLRTTTS
FYGCIRNLALDAKLLDLSASVRYHNVDMDSCLLEERPKRVLLPDDTDLEAEPTPDPARTP
PPPPSQLNALTPGTLTCASMDNTTSIPEAHQFGISRHSHMVLSINPNTVRRSFSLELSVR
TFAQSGLLYYMAHANQMDYATLQLLGGRLFFTCDKGSGPATATFPVPVNDGQWHTVKTDF
NKKSVVISVDGQPSAPVPAKGNTLDVENKLYLGGLPHTYTAKKIGNVTHSLAGCIQKVML
NSVKLDTQSPVSEHSTAHCFAAAQDGTFFNGSGYAALIKNGYKVGSDMAVAMVFRSTAPD
GVLLGVSSAKVDAIGLELANGQAVFHVNNGAGRLSATSRLGWWLCDGRWHTLLAKKTKNA
LSLTVDGVTVLTDNPHPQSTSAETKDPVYVGGFPDGVKQNCLTSRMPFRGCMRNIRLIKG
HVTNILDFSTAFTLQGVSPHSCPTTTA
NT seq
9264 nt
NT seq
+upstream
nt +downstream
nt
atgaggctcttcttctgtgcaattgtgctgctatgggcatcctccgcggattgccagcaa
agaggtctcttccccgccatcctcaacctggccagtaatgcagagatcaccaccaacgcc
acctgtggagagcctgagccagagatgtactgtaagctagtggaacacgtaccaggacga
cgcatccgcaactcccagtgtcgaacctgtaatgcccagagtcaaaaccccaaagagcaa
catccaatcaccaatgctatcgacggcaccaacgggtggtggcagagcccaagcataaaa
aatggccgccagttccacttggtgaccatcactctggatttacgacagattttccaggtg
gcctacatcatcatcaaggcagccaactcccctcgtcctggtaactgggtgctggagcgt
tcaatggacggtgttgagtacacaccctggcagtactacgccatcagcgacacagaatgt
ctgacccactacaacatcaccccccgcctcggaccccccacctacaaacgagacgacgag
gtcatctgtacctcttattactcacgcctcgtacccctggagcatggagagatccacacg
tctttgatcaacgggcggcccagtgctgaccaactgaccccagagctgctagacttcacc
tcagcccgctacatccggctgcgtctgcagaggatccgcacgctcaacgccgacctcatg
accctcagctaccgtgaccccaaggaggtggaccccatcgtcaccagacggtactactat
tcaatcaaggacatctcagtgggcgggatgtgcatctgttacggccacgcccagagctgc
cccttggaccccgttgccaagaagttgcagtgtgtgtgtgagcacaatacctgtggggag
agctgtaatgagtgttgccccggctaccaccaggaaccgtggcaaccgggaaccctctcc
aacggctacacatgcgagaaatgtaactgccacgacaaggccgaggactgctattacaac
caaactatggacgaccacaagatgagcatgaacttgcatggtcacttccatggcgggggt
gtgtgtatcaattgtacccagaacacggccggtgtcaactgtgagacctgcgcagatggc
ttctacagacccagcgaggtgtcgccctacgatgagaacccatgtgtggagtgtggctgt
gacatgagggggtctttgactcctgcctgcatcagagatgacaaccacgccaagctggag
aaaggtctgaacccaggccagtgtctgtgtaaagagggctttgcaggtgagcgctgtgaa
cgctgtgcctttggctacaaggacttccccctgtgttcacgctgtgagtgcagtctggaa
ggcagcctcaacatcgacccctgcacagagtgcatctgcaaggagaacgtgatgggggcc
aactgtgacctgtgtaagcagggtttctacaacctggaggaccgtaacccagagggatgc
acagagtgtttctgcttcggtgtgtctgacgtgtgtgagagttcaccctggtctttgtct
cagactgttcactccaatggatggctccttccaacccaaagcgtctccatctacacggca
cccctcactgatgacgacaacaacctcattgtccccagcatcaccatgatccagtcgtac
cgttttgtgtctacctgggccgccccggagggttttctgggaaacaggctgacatcgtac
ggagggtttttgaactacactgtggcctatgatgtttcagtggacaacgtggacaattct
ctgccgtcacagttcgatttgattattgaggggaacgggaggaccctgcgccagacgccc
cccaggcagctcttcctgacgcccctgcgggagcagcttgtttccgtggagctcctaccg
cagggcttcgtagacctacacacaggccagagggttgaccgggacgagctgatgactgta
ctggccgacgtggccggactgaggatcagaggccacctcaatgccagcgcagagggggca
ctcaggttgagcaccgtatctctggacatggcagacatcagtgctgctaacccagtccag
gcccgggatgtggagcagtgtgagtgcccctggggctacttgggcacatcctgtgagtac
tgttcatctggattctatcgcgtcggcgggatcctgttcggaggcaactgtctccagtgt
gagtgtaacgatcatgctacagaatgtgacatcaacggagtctgtctggactgtacccac
aataccactgggccccactgtaaccaatgccttcccggttactatggcgacacttcagag
ggcaccctggaggactgccagagatgtgcctgcccgctgatagtggcgacgaacaatttc
agccccacctgtgtcctggagggccctgggcaggtgacatgtgaccagtgccagcagggc
tacactgggactaagtgtgagaggtgtgctaatggttaccatggtgacccgacggtggca
ggccaggagtgtgtggtgtgtgagtgtaatggtaacgtggactcctgggagccgggccac
tgtgacaccagcagtggtgtgtgtctgaagtgtcacagccacaccagcggagactactgt
gagaggtgcgaagacgggtactacggtgacgccatcactgccaagaactgcctggcttgc
ggttgccatggaaacgggtcgtactcggccatgtgtgacctgttcactggacagtgtacc
tgcaaacccaatgtggtgggagataagtgtgaccagtgtcaggtgggcttccacagtctt
ctcagtggacaggggtgcagagactgcaactgtagccaatcaggatctgtgtccacagca
tgtgaggaggaggggttgtgccaatgcatcccaggggtggccggggacaaatgtgaccgc
tgttaccatggttacttcaactaccaggacagcgggtgtacacagtgtgagtgtgcccac
acccacggaaactgtaacgcaacgacaggcgagtgtatctgccctccccacaccatagga
gagaagtgtgagctgtgtgaggaacgtcactggggtcacgacactgtagcaggctgtaag
tcatgtgagtgcagtgaggccggcagttctgccacccagtgtgacctcaccaatgggcag
tgcctgtgccgccgggagttcgccgggcagaagtgtgaccgctgcaccatgggctacagg
ggctacccagaatgcacggcgtgcaactgcaacatcaacggcaccagagaggagttatgt
gatgaggaactgggcctgtgcagctgtgaggccccagggaactgtgtgtgcaaggacaat
gtgggcggaggaggctgtgatgagtgtaagaagggaaccttcggcctatctggtcctaac
ccggccggctgcagcccctgtttctgtttcggggtctcctcagactgcgaggagctcagt
gggatggtccgtgtaccgatcacactggggtctgaaccagagctgctgcgtgtggtcagt
cagagtgacctccagggcagtgtggaaggggtctactaccagaccccagacatgctgctg
gacaccagggagatagagagccccaccctggctggaccctactactggaggcttcccaaa
cactaccagggaaataagttgttgtcgtatggagggaagctgtcctacatggtggcgttc
tatgctctggatggggccggcctggccaactacgagcctcaggtcctgatgagggggggt
catctgggaaagaaggttatctacatagatatgcccgcccctgacaacagggtcaaaacc
cgccaggacgtcccactgactgagcacaagtggaagtatttcaactctgtgtcggagaaa
gctgtgagtcattctgacttcatggcggtcctgagcaacatcgagtacatcaccatcaag
gcctcgtatggtacaggactgcagcagagcagaatctccaatatcaccatggatacggcc
ctagaggcggaggaggggttggaggttatggaggtggcatgtctgatagagacctgtgag
tgtccagctggctacgctggactgtcctgccaggagtgtgctcccggctactaccgccaa
ccagtgactgatctgaacctgcgggggaagagacccctgatccagccctgtgtgccctgc
cagtgtaacaaccacagccaggcctgtgacctggacacaggagaatgcctgggctgccag
cacaacacagcaggcgagcactgtaacatgtgtggctcagggtactatgggaacgtgaaa
ggctccatcagtgactgctctctatgtgcctgccccctcaaagagaacagcttcagtcct
acctgtgctctggagggagtggtgggagacttccgctgtaacgcctgcaagcctggttac
gagggacgctactgtgagaggtgttcagtgggttactatgggaacccatctgctccagga
gagaagtgtgaggcgtgtcagtgtagtactgcaggttctctccatctagtgtgtgactct
ctgaagggccagtgtgaatgtaaggccggggttaggggacacctgtgtgaccagtgtgag
gcgagacacgtcctggacggggaccagtgtgtctcgtgtgatgataagtgtacgggggac
ctcctggatgacctggatgcagtagagcgctccttcctgtctgtcaacctgaccggggtc
atcctgtccccctacaacacactggtcagcctggagaacgacacacgagaggtcaagaat
ctgatgtcttgggagaggagcccagcatatcacctgaatagggcggaggaggacttgaca
aatctcacccaggacatagacggactgctacggaaggctacagggctgtctgctgatgga
gaggaagtggcccagtccacagagaacagcgttacccagggggccgagcttctggagtac
atcaccaccattcacactgccatacaagtcctggcggaggaggctggccgtctgaacagg
acagagaacgtggagaaggacgaggctaacagcacacggctacgagagcagatagcggcc
atattggaaaccatcagagcagtcaacctatccctggccaacgccagcgtctctacagaa
ctcagtgctactgaggctctcctccagagggtgctgaaggacatccaggagccccagggg
gcgatagagtcccagaccctcaacatctctaccaccctgactgaacaccaccaacagcta
gaggatgcccatgccctactgatgactgccagggagaagaacaaccacacacacaccctg
ctggggagcatcaacaccaacctgccagagtaccagggtctgaagcagaatgtgagccgg
ctgaaccagacagcagaaacccaactggaggagactcaggacatcctggctgatgctgtc
aatctagcagaggaaatgggcaacatcacctctcagctggagggggccaaggaccagctg
gagcagtggaaccccatgttgaggaagcatgtggacgctctggtgatggagctgaggaag
aaagatgctctggagctcgtctacaaggctgaggaccacgcccgggaactcagcaagaag
gcccagggtctgcagagctctctagtggaggtgatgaatgccactctgaacgccaccagt
gcagtgcatggtaactctaacatcagagctaacgtccagcctgcagaggagatggctaac
ttagccaacctgaccgctactatggccctcaatatgactgtccagccagaggagtctcta
actgatcttggatctgaggctgtgcagcgtagtgagaatgttctggctgagagtctggcc
ctgagaaacagcactgagggtctcctggctaacatcagtgacgtgaccgatagaatggcc
ttgctgaaagagaaactctgtaacaccagccgtctgatcccagagcaaggggccctgctt
cacagccttcccaacgtaggcaccagtgagcaggtgctggaagccaaggagcaggctgcc
ttggccaacgcttccctacagagggcgctggagcgtttggaggagctccaggtcagactg
gaggagtccagcacggctgtggcccaggccaaaaccagcatctccaacaccaaccagctg
gtctccgactcacactccactgctagtacagctgagtctaagctgaaggaggcagagagt
cgtacagagaggctgtatgaccgtctcaaacccctcaagaccctgggggagaacctgagc
agaaacctgtctgagatcagagagatgatcaaccaggcccgcaaacaagctgcctcgatc
aaggtggcagtgctggcagacaaaaactgtgtgagggcctacaagcctgaggtgtcctcc
agtaacttcaacactcttaccatgaccgtcaagaccagcgagcctgacaacctgctcttc
tatatgggcagcagctccagcgtggacttcatggcggtggagatgcagcatggcaaggtg
gcgttcctgtgggatgcgggttcaggccacgccaagctggagtaccctgatgtcaagatc
aacaacaacaagtggcaccgcatcaatgccacgcgctttgggaagcacggcacactgtca
gtccaccagctggagtcagaccccttgcccgcggtgaagaccacctcaccaggctccgct
acgatcctggaagtcaacaagtccaccctgatattcgttggtggcctgggaagccagatc
aagtcctctgtggtgaagatgagccagtttaagggctgtatgggggaggcgtcgctcaac
gagaagaacatcgggctgtggaactacgctgagagggagggccagtgtcgcggctgcttc
atgagtccgcagacagaggagacgtccttccactttgatggaagtggctattcagtggta
gagaaacccctccgctccacctccacctcaatcgtcatgctgttcaagagcctttccccc
aacggcctgctgctctacctggcctccaacggcacgagggacttcctgtccattgagctg
gtggagggccaagtgcgtctgacctttgaactgggctccggccctctgaccctcacctcc
aacaaagcctacaacaccggcagctggtacaagatcaccctgcagagaaacaaacgcaaa
gtttatatggcggtgatggcggcagacaactcatcagagaaagagatcatggaggcggag
tctcctgggaccgcatccgacctcaaccgctccgacctggacccaatctacatcggggga
ctgcccatgtctcgccctatcaggagacaagtagtagcacggtcctatgtgggctgcatc
aaaaacatggagattgcccgttccaactttgacctgcttcgagactcctatggtgtcaag
aaaggctgtgtgttagagcctatccgcagtgtgtctgtactgaaagagggctatgtggag
ctgccggctgtgtctcttgacccccagggggagctgttggcctccttctctacccgcaac
gacactggcatcatcctggcaggcttcagcaaggcaggcacccgcaaaagcagacaggct
cgccagcccttcctggcagtcatgctgatgtcggggcgcttggaggttcacatcaacatg
gcagagggtgggagcgtccacaaggttgtggtgaaatcacgctctgggagcttcagtgac
ggacaggagcactcggtcatcctgcagaggaacaggaagatgttggtggtactagtggat
gaggaccaccaggagatggtacgtctgtactcagagaaggcctctctgaccctcacctct
ctgtacatgggcggggtcccaccaggagagggcgccgggctgctccgaacaaccacctcc
ttctacggctgcatcagaaacctggccctggacgccaagttgttggacctgtcagcttct
gtgaggtaccacaacgtggacatggacagctgtctattggaggagaggcctaaaagggtc
ctcctacctgacgacactgacctggaggccgaacccactccggaccctgccagaacccct
ccaccaccccccagccagctcaatgcgctcacccccggcacactcacgtgtgcatcgatg
gacaacaccacatccatcccagaggcccatcagtttggcatctccagacacagtcacatg
gtcctcagcatcaaccctaacacagtgaggagaagtttctctctggaactgtcggtgcgt
acctttgcccagagtggtttgctctactacatggcccacgccaaccagatggactacgcc
actctgcagctgctggggggacgtctgttcttcacctgtgacaagggcagcggccccgcc
accgccaccttccctgtgcctgtcaatgacggccagtggcacacagtgaagacagacttc
aataagaagagtgtggtgatcagtgtagacggccagccgtcagctccagtgccggctaaa
ggcaacactttggatgtggagaacaagctgtatctgggaggactgcctcacacctacact
gccaagaagataggcaacgtgacccacagcttggcaggctgcatccagaaggtgatgctg
aacagtgttaagctggacacccagagtccagtgtccgaacactctactgctcactgcttc
gccgcagcccaggacgggaccttcttcaatgggagcggatacgctgctctgataaaaaat
gggtacaaggtgggctcagacatggcggtggctatggtgttccgcagcacagcgccggat
ggagtcctcctcggtgtcagtagcgccaaggtagatgccatcggactggagctagccaac
ggacaggcggtgttccacgtgaacaacggtgccgggcggttgtcggccacgtcgcggctg
ggctggtggctgtgtgatggccgctggcacaccctgctggcaaagaagaccaagaacgct
ctgagtctgaccgttgacggagtcacggtactcactgacaacccccatccccagtccact
tcggccgagaccaaggacccggtctacgtgggaggcttccctgacggagtgaaacagaac
tgcctgacgtccagaatgccgttccgtggttgtatgcgtaacatccgcctgatcaagggt
cacgtgaccaacatcctggacttcagtaccgccttcaccctccaaggagtgtcaccccac
tcctgccccaccaccaccgcataa
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integrated database retrieval system
