Coregonus clupeaformis (lake whitefish): 121569358
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Entry
121569358 CDS
T08357
Name
(RefSeq) uncharacterized protein LOC121569358 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
121569358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121569358
Membrane trafficking [BR:
cclu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
121569358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
SOS1_NGEF_PH
PH
SH3_1
SH3_2
SH3_9
Motif
Other DBs
NCBI-GeneID:
121569358
NCBI-ProteinID:
XP_041736183
LinkDB
All DBs
Position
7:complement(52059323..52133627)
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AA seq
1752 aa
AA seq
DB search
MGTDSPVCKERVQSHRDQLEIHHRIPEREPPSPCTVPPSIPSLSSRSLSDSNNHTKASEG
LWLGSLCTRGQGPERWSSEVAHQSGSKECGDKTDGESPSLTEPATFTSDILGETNETLDS
PLEDPPEDSEEFLSPLDYDPYWSREDSAVSGLGDEWHFSLAEVEELGRLQGEGYRDVPIQ
NHTGTTDWRGEISNHTDWRGDISNHTDWRGDISNHTDWRGDISNHTDWRGDISNHTDWRG
DISNHTDWTGDISNHTDWRGDISNHTDWRGDISNHTDWRGDISNHKDWRGDISNHKDWRG
DISNHTDWRGDISNHTDWRGDISNHTDWRGDISNHTDCREDNCAANCHTGLSEPLASYLE
TRGLLLDSAEKEKGQQPIPHQSPKPPSDRDRQECSNSPEALGLKDCLFAEKDSSYSSYLQ
TSSHPALLQQDRGVRIVRYPYPDGSLNLLSFSSLEPILEADPDHSLDNSGTVEDEERRKI
VRIRPTEEDRNTVLLSGDIIMSYMPTFSPSSCHSEDLSSIESSEHQLVSLTFDPDDPRVM
TLPHNRDSAGSERCSSPTPTSVSYDFDTTSTNSEEMEESILPVSGGNANLHKPMKSKSKG
DWAGSSKSSKFSVFAKMPSFRKRKSLKNTKMDSSPRESPDLGLRRELGGGHGGQGGDTSD
DDSVVLMVQQAFSSGPGGRYETEEEEDYGFFPSTPRTRHVRLLFREGPGDTPEGPSSPDS
PLTSQPGGLRHDQTEALEGLHGYKRSKSSDSLNLRMRFAQAHKSLSSLFESRSMDKENEE
ETGSVETGSEGEVGRAKQSWRRLKRERAREAELLRRTLSVPVGDGVEGGDGGGVRTSRQI
HSDYVSRSASGSVLSVPGSPSSLRALSLTDPLTKRGLKDSQSGAGDDKSDGQKRKGKVPP
NSLSINFSDSRPPSSHDSEAPPTNDPSPLSPMSPASLAALANQLSWSPGGAYESTASSMA
ATPDTPVRPMSPKPHSPRPAAQHRAFCYPPTASARASVLSLLLMGQSASVEGLSDPPEKP
KTLKPRTGQIGSSSLSPLEDSGVDSLLTPMSFKQFETSQDGCRPSSQAGGEGKRLAELKS
PGSRPDTTASALRPPLGHRRDRGLRRQRCCSDDLWIEEQKRWKRKLARVMRGSLGQLNTH
CPEELEKWNTPVSLSTMEAFSGMGLKTHCFSQSTPIGLDCLGWRRRISYPSVIVPDGSGE
KAGLGLGDDLGSDEDLYEEFRSSGHRFGHPGGGGEQLAINELISDGSCVYAEALWDHVTM
DDQELGFKAGDVIEVVDATNKEWWWGRILDSEGWFPASFVRLRVNQDEPMEEYLAQLEEA
GAGEEDQPRVGLFLGPGLPCKEQMRTNVINEIMSTEREYIKHLKDICEGYIKQCRKRIDM
FSEEQLRCVFGNIEDIYRFQKKFLKDLEKKFNKEQPHLSEIGSCFLEHQTDFQIYSEYCN
NHPNACVQLSRRMKTNKYVFFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKY
TNPQHRDYKDVEAALDAMKNVARLINERKRRLENIDKIAQWQRSIEDWEGEDILSKSSDL
IFSGELTKISQPQAKSQQRMFFLFDHQMVYCKKDLLRRDMLYCKGRMDMDQIEVLDVEDG
KEKDFNVSVKNALKLRSLAGDEIHLLCAKKPEQKQRWLRAFQDERRQVQHDRETGFSITE
VQKKQAMLNACKSHPAGKPKAVTRPYCDFLLRQKQPSLPSSVPQQQVFMLAEPKRKATTF
WQNIGRLTPFKK
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atgggaacagactctcctgtgtgtaaagaacgagtccagagccacagggatcagctagag
atccaccacaggatccctgagcgtgagcctccctctccctgcactgtgccaccctccatc
ccgtctctgtcctcccgctccctctctgactccaacaaccacaccaaggccagtgaaggg
ttgtggttgggatctctctgtacgaggggccagggaccagagcggtggtcctctgaggta
gcccaccagagcggatcaaaggagtgtggggataaaactgatggtgagtccccttcactg
accgagcccgcaacgtttacctcggacatcctgggggagaccaatgagaccctggacagc
ccccttgaagacccccctgaggactctgaggagttcctgtcccccctggactacgacccg
tactggagccgtgaggactcagccgtgtccgggctgggggacgagtggcacttcagcctg
gctgaggtggaagagctggggaggctccagggagagggttacagagacgtccctattcag
aaccatacaggcacgacagactggagaggagaaatctctaaccatacagactggagagga
gacatctctaaccatacagactggagaggagacatctctaaccatacagactggagagga
gacatctctaaccatacagactggagaggagacatctctaaccatacagactggagagga
gacatctctaaccatacagactggacaggagacatctctaaccatacagactggagagga
gacatctctaaccatacagactggagaggagacatctctaaccatacagactggagagga
gacatctctaaccataaagactggagaggagacatctctaaccataaagactggagagga
gacatctctaaccatacagactggagaggagacatctctaaccatacagactggagagga
gacatctctaaccatacagactggagaggagacatctctaaccatacagactgtagggaa
gataattgtgctgctaactgtcacacaggcctttccgaacccttagcttcttacctggag
accagaggcctgctattggacagtgcagagaaagagaaggggcagcagcccattccccac
caatcccccaagcctccttcggacagagacagacaggagtgtagcaactcacctgaggct
ctaggattaaaggactgtttgtttgctgagaaggacagctcctacagctcctacctccag
accagctctcaccccgccctactgcagcaggatcgtggggtgaggatcgtgaggtacccc
tatcccgacggcagtctcaacctgctctcctttagtagcctggaacccatcctagaggcc
gatcccgaccactccctggacaactctgggacagtggaagatgaggagcggagaaagatt
gttaggataaggcccactgaggaggacaggaacactgttcttctgtctggtgacatcatc
atgtcctatatgcccactttcagcccgtcgtcgtgtcactctgaggacttgtccagtatt
gagtcatcagagcaccagctggtctcgttgacctttgaccccgatgaccccagggtcatg
accttaccacacaacagggactcggcgggcagcgagagatgctccagtcccacccccacc
tctgtgtcctacgattttgacaccaccagcactaacagtgaggagatggaagaatccatc
ctgcctgtctcaggggggaatgccaacctccacaaacccatgaagagcaagtctaaaggc
gactgggcggggagctccaagagctccaagttctctgtcttcgccaagatgccttctttc
aggaagaggaagagtctgaagaacaccaagatggacagctcgccccgggagtcacccgac
ctgggcctgagaagggagctggggggaggacatggaggacaggggggagacacctcagat
gatgacagtgtcgtcttgatggtccagcaggccttctcctccggtccggggggtcgctac
gagacagaggaggaggaggactacggcttcttcccctccacgcctcgcacccgccacgtc
cgcctgcttttcagggagggacctggggacacccccgaagggcccagcagcccagacagt
cccctgacctcccagcccggaggtctcagacacgaccagaccgaggccctcgagggcctg
cacggctacaagaggagcaagagctccgacagcctcaacctccgcatgcgcttcgcccag
gcccacaagtccctgtccagcctgtttgagtctcgctccatggacaaggagaacgaggag
gagacggggagcgttgagacggggagcgaaggggaggtggggcgagccaaacagtcctgg
aggaggctgaagagagagagggccagggaggctgagctgctgaggaggaccctgtctgtc
ccggtcggagatggggtcgagggaggggacggtgggggtgtgaggacgtccagacagatc
cacagtgactacgtgtcccgctctgcctcgggctcagtgctcagtgtccctgggtccccc
tcctctctcagggctctgagtctcaccgaccccctcactaagaggggcctgaaggacagt
caaagcggggccggggacgacaagtcagatggccagaagaggaaagggaaagtcccgccc
aacagcctgtcaatcaacttctcagactccagaccgccatcctcgcacgactctgaggcc
ccgcccacaaacgatcccagccccctgtcgcccatgagccccgcctccctggctgcctta
gccaatcagctgtcctggtccccagggggagcctatgagagcacagcgtctagcatggca
gctacaccagacaccccagtgagacccatgagccccaagccccacagccccagacctgct
gcccagcacagggccttctgctacccccccactgcctctgcccgggcctcagtcctgtcc
ctgctcctcatgggccagtcagccagtgtagagggcctgtctgacccgccagagaagccc
aagaccctgaagccccgaacgggacagataggctcctcctccctcagcccattggaggac
agcggagtggacagtctgcttacacctatgtccttcaaacagtttgagaccagtcaggat
ggatgtagacccagtagccaagcagggggagaagggaagaggctagcagaactgaagagt
cctggatctagaccggacactactgcctcagccctcagaccaccactaggccacaggcgg
gacaggggtctgagacgccaacgctgctgctcagacgacctgtggatcgaagagcagaag
agatggaagcggaagctggcccgagtgatgaggggcagcctgggacaactcaacacacac
tgtcctgaagagctcgagaaatggaatacaccagtgtccctgtcgaccatggaggcattc
tctgggatgggcctgaagacccactgcttctcccagagcacccccatcggactggactgt
ctgggctggagacgacgcatctcctacccctcggtgatagtaccagatggtagtggagag
aaggccggtctggggctgggtgatgatctaggcagtgacgaggacctgtatgaagagttc
cgcagctccggacatcgctttggacacccagggggaggtggcgaacaactggccataaat
gagctgatcagtgatggcagttgtgtgtacgccgaggccctgtgggaccatgtcacaatg
gacgaccaggagctgggcttcaaggcgggggacgtcattgaggtagtggatgccaccaac
aaggagtggtggtggggacgcatcctggacagtgagggctggttcccagccagcttcgtc
cggttgcgtgtgaaccaggatgagcccatggaggagtacctagcccagctggaggaggct
ggggctggggaggaggaccagccaagggtgggtctgttcctgggaccaggcctgccctgt
aaggaacagatgaggactaatgtcatcaatgagatcatgagcacggagagagagtacatc
aaacacctcaaagacatctgtgagggttacatcaagcagtgccgtaagaggatagacatg
ttctcagaggagcagctgcggtgcgtcttcggcaacatcgaagacatctaccgcttccag
aagaagttcctgaaagatctggagaagaagttcaacaaggagcagccgcacctcagcgag
atcggctcctgtttcctggaacaccaaacagacttccagatttactcggagtactgtaac
aaccaccccaacgcctgtgtacagttgtcccggcggatgaagaccaacaagtatgtgttc
ttcttcgaggcctgtcgcctgctccagaagatgattgacatctcgctggatggcttcctg
ctcacgcccgtccagaagatctgcaagtaccctctgcagcttgccgagctactgaaatat
accaacccccagcacagggactataaggacgtggaggctgccttggacgccatgaagaac
gtggccaggctgatcaacgagaggaagcggcgcctggagaacatcgacaagatcgcccaa
tggcagcgctccatagaggactgggagggagaagatatcctcagtaagagttcggatctg
atcttctctggagagctgacgaagatctcccagcctcaggctaagagccagcagcgcatg
ttcttcctcttcgaccaccagatggtgtactgcaaaaaggacctcctgcgcagggacatg
ctgtactgtaagggtcgcatggacatggaccagattgaggtgttggatgtggaggacggg
aaggagaaggacttcaacgtgtcggtgaagaacgctctgaagctgcgctcgctggcgggg
gacgagatccacctgctgtgtgccaagaagcctgagcagaaacaacgctggctccgagcc
ttccaggacgagaggaggcaggtgcagcacgaccgtgagacaggattctccatcactgag
gtccagaagaaacaggccatgctcaacgcctgcaaaagccatccagctgggaagcccaaa
gcggtgacccgaccctattgtgacttcctgctccgtcagaagcagccatctctgcccagc
agcgtgccccagcagcaggtcttcatgctggctgagcccaaacgcaaggcaaccaccttc
tggcaaaacatcggcagactgacgcctttcaagaagtga
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integrated database retrieval system
