Coregonus clupeaformis (lake whitefish): 121569482
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Entry
121569482 CDS
T08357
Name
(RefSeq) U3 small nucleolar RNA-associated protein 18 homolog
KO
K14553
U3 small nucleolar RNA-associated protein 18
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121569482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cclu03009
]
121569482
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121569482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_Prp19
WDR55
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_EML
Beta-prop_NUP159_NUP214
NBCH_WD40
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_VPS8
Beta-prop_NOL10_N
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
KNTC1_N
WD40_like
Beta-prop_IFT122_2nd
Pox_D5
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
121569482
NCBI-ProteinID:
XP_041736400
LinkDB
All DBs
Position
35:16209514..16225532
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AA seq
522 aa
AA seq
DB search
MDKVGIHSRNGRETMKRVSEPEPDYEEEVLKRHKNAQAVTVLGEEDASVKLLEDLVFGAE
DDLAERLVEDREDGGATLLDDDDSSESDVENEARLKVQPTRTAVWEDEDDDLEEEVDMTH
RFRRDLTKSVTEAKMSKQKLQQRMKEQFQKAMGGKPSWAETKVKKKNKKKDDSDEDSEDG
DDLMRKTGNFVGSSDSLPKGIIRMKKCLHANNDRPSEDRLTTVQFHPSAQVVMTAGLDQS
ISLFQVDGKTNPKIQSIHLEKFPVHKAQFSVDGEQVVATSFRNKLFYIYDMMEGKVIPVH
TVRGLREQRVKEFEVSPDGESLLLTGASGYLHVLTMKTKEVVKSMKINGNITGVSFSHDG
SKVFTNSEEGEVYIWDMRSSKCLNRFTDDGCVSGTSIAASRNGQYLACGSAAGVVNVYSQ
EVCMRQNNPKPLKAIMNLVTSATSLRFNPTSEILAIASRADDEAARLVHIPSFTVFSNFP
MFQRKTIYRAHCLDFSPNSGFFSLANNKGHAPLFRLLHYKDF
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagtcggtatacactctagaaacgggagagagacgatgaaaagagtctctgaa
ccagagcctgactacgaggaagaagtgctaaaaagacacaaaaacgcccaggctgtgact
gttttgggcgaagaagatgcatctgtaaaacttcttgaagatcttgtttttggtgctgaa
gatgatcttgcagaaaggctcgtggaggacagagaggatggaggtgccacacttctggat
gatgacgattccagcgaatccgatgtagagaatgaagcacggctgaaggttcagccaacc
aggacagcagtgtgggaggatgaggatgatgatctggaggaagaagtggacatgacacac
cggttccgtagagacctgaccaagagtgtgacagaggccaagatgtccaaacagaagtta
cagcagaggatgaaagaacagttccaaaaagcaatgggtggaaagccgtcgtgggcagag
acaaaagtaaagaaaaagaacaagaaaaaagatgactctgatgaagactctgaagatgga
gacgacctgatgaggaagacgggcaactttgtgggctcatccgacagccttcccaaagga
atcatacggatgaagaagtgcctacatgccaacaacgaccggccgtctgaggacaggctg
accacggtgcagttccacccctccgcccaggttgtcatgacagcagggctcgaccagtcc
atctctctgttccaggttgatgggaagaccaaccctaagatccagagtatccacctggag
aagttcccggtgcacaaggcccagttcagcgtggacggggagcaggtggtggccaccagt
ttcaggaacaagctgttctacatctacgacatgatggagggcaaggtgatccctgtccac
actgtcagaggtctgagggaacagagggtgaaagagtttgaagtctcccctgatggagaa
tccctccttctcactggcgcctccggatacctccacgtgttaacaatgaagacaaaggag
gtagtgaaaagcatgaagatcaacggaaacattacgggagtgtctttctcccacgacggc
agcaaagtcttcaccaattctgaggagggtgaggtgtacatatgggacatgaggagcagt
aaatgcctgaacaggttcacagatgatggctgtgtgagtgggacctccatagctgcatcc
aggaacggacagtatctggcctgcgggtcagcggcaggtgtggtgaacgtgtactcccag
gaggtgtgtatgcggcagaacaaccccaagcctctgaaggccatcatgaaccttgtgacc
tctgccacctctctccgcttcaaccccacctccgagatcctggccatcgcctccagggct
gacgacgaggctgcccgattggttcatatccccagcttcacagtgttctcgaacttcccc
atgttccagaggaaaaccatttacagggcccactgcctggacttctccccaaacagcggc
ttcttctccctggccaacaacaagggccatgcccctctcttcaggttgttgcattacaaa
gacttttga
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