Coregonus clupeaformis (lake whitefish): 121569585
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Entry
121569585 CDS
T08357
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121569585
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cclu04054
]
121569585
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121569585
Pattern recognition receptors [BR:
cclu04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
121569585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
121569585
NCBI-ProteinID:
XP_045065296
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All DBs
Position
30:complement(52456716..52467375)
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AA seq
678 aa
AA seq
DB search
MADFGLYGYQEEVVQRALRGENIIIWLPTGGGKTRAAVYVAKKHLENNPGAKVAVLVNKV
HLVDQHYNKEFKPYLGRDYSLVSISGDCDQKDFFGCEVKNSDLVICTAQILENALTNQEE
GKHVELSQFTLLIIDECHHTHKDGVYNKIMGHYVAQKLKGESRLPQILGLTASPGTGGAK
SIKGAVGHVLQICANLDSVIVSSKVYAPELKKKVPRPRKRFDIVDRRPQDPFGDHLKFMM
QLIHDFMALGPDFPVREFGTQEYEADVVILEKKGVTDRNRLLAQCALHLRQYNDALLIND
TVRMVDAFRVLEAYYSTKSSTAMDGTDFFLLGLYQENEVELRKLAGDDRFENPKMGKLQS
TLLEQFDQGEHSRGILFSKTRKSTHCLYDWVSKNPALQRAGIRAAILTGAGNGINYMTQN
EQKDTISHLRQGSLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARASDSV
YSVVAQAGGREVRREHLNECLEELTGRAISEVQRMEPREFQIKITELQTEALLTRQLKEQ
LKIKKKGCFSAASIQLSCRGCFVLVAFGNDIKVIENAHHVNINPDFERYYKTNGQTLLKT
FEDWEPGRVISCAACGKQWGMEMVYKEIALLPILAIKNFAMETPEGRKLAKNWKDVEFTV
EEFNFTTYCNNKFPGMFD
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcagactttgggctgtatgggtaccaggaggaggtggttcagagggctctccgaggg
gagaacatcatcatctggctgcccaccggaggaggaaagacccgggctgctgtatatgtg
gccaaaaaacatctggagaataaccctggagctaaggtggccgtgctggtcaacaaggtt
catttggtagaccagcactacaacaaagagttcaaaccctacctgggtcgggactatagc
ctggtgtctatcagtggggactgtgaccagaaggacttctttggctgcgaggtcaagaac
tctgacctggtcatctgtacagcacagatactggagaatgccctgaccaaccaggaggag
ggaaaacatgtcgagctctcacagttcactctgctgatcattgatgagtgccaccacact
cataaggacggtgtctacaataagatcatggggcactacgtggcgcagaagctgaagggg
gagagccggctgccacagatcctgggcctcactgcctctcctgggacagggggagccaag
agcatcaaaggagctgtggggcatgtgctgcagatttgtgccaacctggactcagtgatt
gtgtcgtctaaagtgtatgcccctgagctgaagaaaaaggtccccagacccaggaaaagg
tttgacatcgttgacagaagacctcaggacccatttggggatcacctgaagttcatgatg
cagttgatccatgacttcatggccttagggcctgactttcctgtcagggagtttggcacg
caggagtacgaggcagacgtggtgattctggagaagaagggtgtgacggacaggaacaga
ctgctggcccagtgtgctctccacctgcgtcagtacaatgacgccctgctcatcaacgac
acagtgcgcatggtggatgcctttagggtcctagaggcctactatagcaccaagagttcc
actgccatggatggaaccgacttcttcctgcttggactctaccaggagaacgaggtggag
ctgaggaaactggcaggcgatgaccggtttgaaaaccctaagatggggaagcttcagagc
accctgctggagcagtttgaccagggtgagcactccagaggcatcctcttctccaagacc
cgtaaaagcacccactgcttgtatgactgggtgtccaagaacccagccctgcagcgcgct
ggtatcagggcagccattctgaccggcgctggcaacggcatcaattacatgacccagaat
gagcagaaggacacaatcagccacctccgccagggctccctcaacctcctgatctccacc
agcgtagccgaggagggcctggacatcccagaatgcaaccttgtggtgcgctatgggctg
ctgaccaatgagatcgcacaacagcaagccagtggccgggctcgggcaagtgacagcgtt
tactctgtggtggcccaggcaggggggcgggaggtgcgtcgggaacatctcaatgaatgt
ctggaggaattgactggcagggccatcagcgaagtgcagaggatggagcccagggagttc
caaattaagatcactgagctccagacagaagcgttgttgaccagacagttgaaagaacag
ttgaagatcaagaagaagggttgtttcagtgctgctagcattcagctctcgtgtcgaggc
tgttttgtgctcgtggccttcggcaatgacattaaagtcattgaaaacgcacaccatgtc
aacatcaaccctgactttgagaggtactataaaaccaatgggcagacacttctgaagact
tttgaggactgggagccaggccgtgtgatcagctgtgctgcctgtggcaagcaatgggga
atggaaatggtatataaggagattgccctgctgcccattctggccatcaagaactttgcc
atggagactccagagggaagaaaactagccaagaattggaaggacgttgagtttacagtg
gaggagtttaacttcaccacatactgtaataacaagttccctggcatgttcgattga
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