Coregonus clupeaformis (lake whitefish): 121569658
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Entry
121569658 CDS
T08357
Symbol
casc3
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3
KO
K14323
protein CASC3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121569658 (casc3)
03015 mRNA surveillance pathway
121569658 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121569658 (casc3)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121569658 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
121569658
NCBI-ProteinID:
XP_045075684
LinkDB
All DBs
Position
Unknown
AA seq
659 aa
AA seq
DB search
MADRRRRRRRASQDSEEDDESGSGSESGKSLSXTTKPRVRDPEPVEAPAVRVVPKNDAES
ECESEDGVGEAVLSDYESADPEENGSHSEGGEEEEEEEEEVPPPAAGPKPTPAADTPAVE
EQLQEGGGKEEEVEKGVSKEVKCEDKGNLAGERQSGDGQESTEDSENKGTKPGQKLDDDQ
DRNNPAYIPRKGMFFEHDVRGNAQEEERPKGRNRNLWKDEGRWEHDRFREEEQAPKSREE
LVSIYGYDIRNGGGSNDRSYRQRKPRHSTSPVRDKRWRDVDGERPVHTSWQQGGNPNSRS
APPAVALQQSGPPPSAAPNTQRTNNPPRPSSHPPARGFQGNRPPQAQHRNDRNQESQRPG
PKAHPAEPLQTRSLPPMDGERGPRSRGNRGAHTERSPSVVVEEVRSEEDDERNTTTVTTS
QSVYHNRHYSGKGDRERDSAPLRRQEQQRGGSAPPADNPVTRDASPAPERPVEKKSYSLA
RRTRTRATELGKQASVEEPASTVSSSALKSEPWQGPGQSPGDAGDSSQGSQGTGLTGLDQ
DLARLSLAGQNWAQNPSSYLRAEMRGIPNSMHMGGAPPQYSNIEELGAGNRAKRYSSQRQ
RPSPEPAPPMHIGVMEGHYYEPMSYQGPIYAHGDSPAPLPPQGMLVQPEMHLPHPRHPG
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcgacggcgaaggaggcgcgcgtcccaggacagcgaggaggacgatgaa
tctggttcgggatcagaaagtggaaagtccctttccncaacgacaaagccccgagtacgg
gaccctgaaccagttgaggcaccagctgttcgtgtggtgccgaaaaatgatgctgaatcc
gagtgtgaaagtgaagatggtgtaggagaagctgtcctttctgactatgaaagtgcagat
cctgaggagaatggctcccattcagagggaggtgaggaggaggaagaggaggaagaagag
gtccctccaccggctgctggacccaaacccactcctgctgccgacacccctgctgtggag
gagcagctgcaggaaggaggggggaaggaagaggaggttgagaaaggtgtaagtaaagaa
gtgaagtgtgaagataaaggcaacctggcaggggagcggcaaagcggggatggacaggaa
agtacagaagactctgagaataaaggcactaaaccaggccagaagctggatgatgaccag
gatcgtaataacccagcctatatcccccgtaagggaatgttctttgagcacgacgtcaga
ggaaacgcacaggaggaggaacggcctaagggtcgtaacaggaacctgtggaaggatgag
ggtcgctgggaacacgataggttcagggaggaggagcaggcgcccaagtcacgtgaggag
ctggtttcaatctacggctatgacatccgcaacggaggtggctccaatgaccggtcctat
agacagcgcaagcccagacacagcacctctcccgtccgggacaagcgctggcgggatgta
gacggggagaggcccgtccatacctcctggcagcagggagggaaccccaacagccgtagc
gcccccccagccgtggccctgcagcagtctggtcctcccccctcagcagcccccaacacc
cagcgcaccaacaacccccccaggccctcctcccaccccccagcccggggcttccagggc
aaccgccccccccaggcccagcaccggaatgacagaaaccaggagtcccaacggccaggc
cctaaggcccaccccgccgagcccctccagacccggagcctaccgcccatggacggcgaa
cgaggccccaggagccgggggaacagaggggcccatacggagcgcagcccttcagtagtg
gtggaggaggtccgcagcgaggaggatgacgagcgcaacaccactactgtgacaacgtca
cagtccgtgtaccacaatcgccactacagtggcaaaggtgatcgagaaagggactctgca
ccgctacgacgacaggagcagcagcgagggggatctgctcctccggcggacaacccggtt
acccgcgatgcctccccggctccggagcggcccgtggagaagaagtcgtactccttagcc
aggaggactcgcacccgggccactgagctgggcaagcaggcctctgtggaggagcctgcc
tccaccgtgtcttcctcggccctgaagagtgagccctggcagggccccggtcaaagcccg
ggggatgctggagacagcagccagggcagccaggggacaggactcacagggctggaccag
gacctggccagactcagcctggctggacagaactgggcccagaacccatcttcgtatctt
cgcgctgagatgagaggcatccctaactctatgcacatgggtggagcacctccacaatac
agtaacatagaagagctgggagctggtaaccgggcaaagcggtactcgtcccagcgccag
aggccaagccccgagcccgctcctcctatgcacataggggtcatggagggtcactactat
gagcccatgtcttatcaaggaccaatctatgcccacggcgacagccccgcccccctccca
ccccagggcatgctggtccagcctgagatgcacctcccccatcccaggcacccaggttag
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